| |
HDAC1
histone deacetylase 1| Gene | | Official Symbol | HDAC1 | | Official Full Name | histone deacetylase 1 | | BirdBase ID | BB-GG4466 | | CGNC ID | 2394 | | also known as | histone deacetylase 1|HD1 | | gene type | protein-coding |
| | Genomic Map | | | Sequence Information | | | Gene Expression | | | Orthology | | | Gene Ontology | | Molecular Function | activating transcription factor binding, core promoter binding, histone deacetylase activity, more...histone deacetylase binding, NAD-dependent histone deacetylase activity (H3-K14 specific), NAD-dependent histone deacetylase activity (H3-K18 specific), NAD-dependent histone deacetylase activity (H3-K9 specific), NAD-dependent histone deacetylase activity (H4-K16 specific), RNA polymerase II repressing transcription factor binding, RNA polymerase II transcription corepressor activity, transcription factor binding | | Biological Process | chromatin modification, negative regulation by host of viral transcription, more...negative regulation of androgen receptor signaling pathway, positive regulation of cell proliferation, positive regulation of receptor biosynthetic process, positive regulation of transcription from RNA polymerase II promoter | | Cellular Component | cytoplasm, cytosol, histone deacetylase complex, nucleus, NuRD complex, Sin3 complex |
| | Links to other databases | |
Entry 1| GEISHA Id | HDAC1.UApcr | Data Source | GEISHA ISH Analysis | | Forward cDNA Template Primer | AAAGCAAAAGAGGAGAAAGCCG | | Reverse cDNA Template Primer | ATTAACCCTCACTAAAGGGCTAATGAGGTCTGCCACATCC | cDNA Template Length | 819 | | Forward cDNA Template Probe | show GGGAACGTTCCCACCACATCAGGGNTGGATTTTCACTTGGGCATTTTCCAGATCTATACCTGGCAGGGCTCTTGGGCAG
ATTGGACTCGAGCGATTTTCTGATCTGCTTGTAAGCTGCTTCATCTCTTTCCACCAGTTTGCTGCAGGAAGGTAGCCAA
CTCTGTTCAAGAACTGCACTATTTGACCCTGAGAAGCGGCACCAGCTTGCAGTTACTTGCCATGGTGGAATCAGACTGA
AGACCAAAGGAACACTCAGTCTCTCACAGGCTTAATTTGGGAATTCATATCTCCCACAAAAAAAGATAAAATAAAATAA
AATAAAAGAGAAAGGAAAAGAAGAAAAAAAAAAGTTTCANGGCCATCTTTCCNCCTAACCTGAAATGCANACNCTACTT
CTACTTAAATTATTCATTTTCAAGGGNGGTTACTTCANAGGAGAGCAAAGAAAGGAAGTGATTCTTTTTAAAGACNCNC
TAAGGAGGCAGNGGAAGGCAAANAGTGAAACTTCCCAGGCNCCAATCCNGGGCAGNGCGGGTCTCTCTACTCTGCANAG
TCCNCCCNGTCNGCTCCCAGCGGAGTGCANCAAGGAATAATTTACAGTTCNCAAGTCATTTATATNTTTATATAGAAAT
ATATACCGAAACTTATATAAAATATAAATCCTGNGGAATGGGAGGCAACCAGANAAGCTAACCTACGATAACTATGCNC
TGACAGGTACTGTCCAGCTGCAGCCATCTTAGGTGGATTTTGTCTCTTCCTTCNCCCCCTTGGGTTCGGCTTTCNCCCT
TTTNGCTTTAAA |
Entry 2| GEISHA Id | HDAC1.Murko.2010 | Data Source | Publication | | Complete cDNA Template Probe | show GAAGAAGAAGAAGATCCTGAGAAGCGCATTTCAATCCGCAATTCTGATAAGAGAATATCCTGTGATGAAGAATTCTCTG
ACTCTGAAGATGAAGGGGAAGGAGGGCGCAAAAATGTTGCCAACTTTAAGAAGGCCAAGCGTGTGAAAACAGAGGAGGA
AAAGGAGGAGGAGGAGAAGAAGGATGAGAAAGAAGAGGAAAAAGCAAAAGAGGAGAAAGCCGAACCCAAGGGGGTGAAG
GAAGAGACAAAATCCACCTAAGATGGCTGCAGCTGGACAGTACCTGTCAGTGCATAGTTATC | | Citation | Murko C, Lagger S, Steiner M, Seiser C, Schoefer C, Pusch O. Expression of class I histone deacetylases during chick and mouse development. Int J Dev Biol. 2010;54(10):1527-37. | | Copyright | Reprinted from Int. J. Dev. Biol., 55(1), Copyright (2010), with permission from the authors and IJDB | | Comments | Primer
sequences used are:
chHDAC1
f: GGATGAAGAAGAAGAAGATCC,
r: GATAACTATGCACTGACAGG (AF_039751, bp1239- 1541); |
Entry 3| GEISHA Id | Hdac1.Zwane.2015 | Data Source | GEISHA ISH Analysis | | Complete cDNA Template Probe | show GAGTCAATCTGCCCAAGAGCCCTGCAGGTATAGATCTGGAAAATGCCAAGTGAAAATCACCCTGATGTGGTGGTGAACG
TTTTCCAGGATGTGGCAGACCTCATTAGCGGGGCAGCGCTGTGCATCGCCCATAGGAGAAGGGATGGAATCTTTATGCA
CTTGTTTCCTATACCTGTGCCCCTCTTTGCAGGGAGGAGGTGAGTTACTGCCCATCTGGCTGCCTGCTTCACTCTGCTT
CTGCCCACAGCTTCGTGTGCTGTAATTGCTTCTCAGTACTGATCTGTGTCCTTGCTGAAACCGTAGCAGAGCAGGACAG
ACAGACGGAGCCCAGCTGATGCCTCTGCTCCACGTGTCACTCGCTGAGAAACTCTTTCTGAAGCAGACATGTTTTCAAG
TGGAACCTTTCCTGTCTTTGCTCTCAAGGCCAGTAAATGCGGAGAGCCTTTTTATCAGCAGTCTGAGCTGTTATCTGTA
CGAGGGAACAGCAGATGGGGCTCTGTACGTTTTTATAACTGCTCCTCTTCCTCCTCCCACACGTTATCTCACACCCAAA
GGTCTTTTGTGATCAGAGCTGGCCTTTCTCACACCTTGCTTTGTACAGCTGAGCGTGAGATGAGCGCTCCGTGGGATGC
TTTGCTGAGCTCCGACTTTGCAGAAGTTCTGCAGGCAGTTCTGACTCGCTGCTCTCCTTCCTCCGGGGGATTCCTCTGT
CCATAAGAGGATCTGTACCTCCCCCGGGGTGCTGCTGGTGGTTTCAACTCTAATAATGCTGCTAACTTAACACAGGTTA
TTTTTAAAATGTTTTATTTTTTTAAATGCTTTTTTCCCCCCTTTTCCACCGTAAGTTTTGTAGTCTCTTGGAACCTGAG
TGGCGTCTCACT | | Citation | Zwane TB, Nikitina NV. Spatiotemporal expression analysis of Prdm1 and Prdm1 binding partners in early chick embryo. Gene Expr Patterns. 2015 Jan;17(1):56-68. Epub 2015 Feb 17. DOI: 10.1016/j.gep.2014.12.003. | | Copyright | Copyright © 2014 Elsevier B.V. | | Comments | Authors indicated the probe was amplified by PCR using the following primers: 5'-GAGTCAATCTGCCCAAGAGC-3' and 5'-AGTGAGACGCCACTCAGGTT-3'. Above sequence was extracted from NCBI accession number NM_204156.1. |
| | Data from NCBI Unigene EST Profile
Unigene ID: Gga.10603 |
MouseFrogFruit FlyZebra FinchZebrafish |
|
