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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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GATA5
GATA binding protein 5

Gene

Official Symbol	GATA5
Official Full Name	GATA binding protein 5
BirdBase ID	BB-GG3954
CGNC ID	3985
also known as	GATA-5, transcription factor GATA-5\|GATA-5 transcription factor\|GATA-binding factor 5
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_205421
Polypeptide	NP_990752
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.2081

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	140628	ENSG00000130700		MIM:611496
Mouse	14464	ENSMUSG00000015627	All phenotypic alleles (2):Targeted, knock-out(1) Targeted, other(1)	MGI:109497
Xenopus	496852, 398144, 379521			484905
Zebrafish	30482	ENSDARG00000017821	ZDB-GENE-980526-340	ZFIN:ZDB-GENE-980526-340

Gene Ontology

Molecular Function	sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity, more...zinc ion binding
Biological Process	positive regulation of transcription, DNA-templated, transcription, DNA-templated
Cellular Component	nucleus

Links to other databases

Entrez Gene	396391
Ensembl Gene	ENSGALG00000005352
KEGG	gga:396391

Entry 1

GEISHA Id	GATA5.Chapman.2007	Data Source	Publication
Complete cDNA Template Probe	show ATGTATCAGGGCCTGGCCCTCGCCCCCAACCATGGCCAGTCGGCTTATTCCCACGACTCCGGCAATTTCCTGCACTCGT CGGCCGGCTCGCCCGTCTACGTGCCCACCACCCGGGTGCCCTCCGTGCTGCAGACGCTGCCCTACCTGCAAAGCTGCGA GCCGCACCAGAGCCACCTCGGCAACCCCCCGGGCTGGGCGCAGAGCAGCGGCGAAACCACCGCCTTCAACGCCGGCAGC CCGCACCCGCCGTCGGGTTTCTCGTACCCCCACAGCCCCCGGGCAGCAGCCCCCCGGGGCGTGGACGGTGCCTACCAGG GGCCCCTGCTGCTGGGCGGCGGGGGCCGGGAGCAGTACGGCAACGCTTTGGTGCGCTCGGTTAACGGGTCCTACTCCAG CCCCTACCCCGCCTACGTGACCCCCGAGCTACCGCCTTCGTGGACGGCCGGACACTTTGAGAGCAGCGTGCTGCACAGC CTGCAGACGAGGCAGGCGGCCCTGCCCGGCCGCAGGTCAACCTTCGAGTATTTGGAGGAGTTCCCCGGGGATGGTCGGG AGTGCGTGAACTGCGGGGCCATGTCCACACCGCTCTGGAGGAAGGACGGCACCGGGCACTACCTGTGCAACGCCTGTGG GCTCTACCACAAAATGAACGGCATCAACCGGCCACTCAAACCCCAGAAGAGGCTGTCTTCATCGAGACGTGCTGGCCTA TGTTGCACTAACTGCCACACAACCAACACCACCCTCTGGAGAAGGAACGCCGAAGGGGAGCCCGTCTGCAACGCCTGCG GCTTGTACATGAAGCTCCATGGGGTACCAAGACCTCTGGCCATGAAAAAGGAAAGCATCCAGACAAGGAAAAGGAAGCC GAAAAACATTACCAAAGGCAAAACCTCAACAGGGTCCACCACTTCGGCCACGAACTCCCCTTCTTCCATTACGAACTCA GACAGCACGGTCACTTTAAAGTCAGAGCCCAGCACAACCTCACAGTACCCCGGACAAGGCATTGTGTCGGTGTCCCAGG CACAGAGCCAGTCAGACGAGGCGCTGGCCGGCGGCGAGTTCAAATTCGAGCCGGAGGACTACCCCTTTTCTCCCAGCAG CATGGCCCCGCAGCCAGGGCTGAGCGTGCCACTGCGGCAGGACTCGTGGTGTGCCCTGGCGCTCGCCTAG
Citation	Chapman SC, Matsumoto K, Cai Q, Schoenwolf GC. Specification of germ layer identity in the chick gastrula. BMC Dev Biol. 2007 Jul 30;7:91.
Copyright	© 2007 Chapman et al; licensee BioMed Central Ltd.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_205421).

Stage

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Location (click to highlight)

Comments (click to highlight)

X-XIV

stage XII

Hypoblast
Kohler's Sickle

1-3

stage 1

stage 2

stage 3

Early Endoderm
Early Mesoderm
Epiblast
Hypoblast
Kohler's Sickle
Primitive Streak

Stage 3c chicken embryo
Stage 3d chicken embryo
sagittal section of Fig. 1 (J).
sagittal section of Fig. 1 (M).

stage 4

Endoderm
Extraembryonic Mesoderm
Germinal Crescent

junctional endoderm
sagittal section of Fig. 1 (O).

Entry 2

GEISHA Id	GATA5.Kamei.2011	Data Source	Publication
Complete cDNA Template Probe	show ATGTATCAGGGCCTGGCCCTCGCCCCCAACCATGGCCAGTCGGCTTATTCCCACGACTCCGGCAATTTCCTGCACTCGT CGGCCGGCTCGCCCGTCTACGTGCCCACCACCCGGGTGCCCTCCGTGCTGCAGACGCTGCCCTACCTGCAAAGCTGCGA GCCGCACCAGAGCCACCTCGGCAACCCCCCGGGCTGGGCGCAGAGCAGCGGCGAAACCACCGCCTTCAACGCCGGCAGC CCGCACCCGCCGTCGGGTTTCTCGTACCCCCACAGCCCCCGGGCAGCAGCCCCCCGGGGCGTGGACGGTGCCTACCAGG GGCCCCTGCTGCTGGGCGGCGGGGGCCGGGAGCAGTACGGCAACGCTTTGGTGCGCTCGGTTAACGGGTCCTACTCCAG CCCCTACCCCGCCTACGTGACCCCCGAGCTACCGCCTTCGTGGACGGCCGGACACTTTGAGAGCAGCGTGCTGCACAGC CTGCAGACGAGGCAGGCGGCCCTGCCCGGCCGCAGGTCAACCTTCGAGTATTTGGAGGAGTTCCCCGGGGATGGTCGGG AGTGCGTGAACTGCGGGGCCATGTCCACACCGCTCTGGAGGAAGGACGGCACCGGGCACTACCTGTGCAACGCCTGTGG GCTCTACCACAAAATGAACGGCATCAACCGGCCACTCAAACCCCAGAAGAGGCTGTCTTCATCGAGACGTGCTGGCCTA TGTTGCACTAACTGCCACACAACCAACACCACCCTCTGGAGAAGGAACGCCGAAGGGGAGCCCGTCTGCAACGCCTGCG GCTTGTACATGAAGCTCCATGGGGTACCAAGACCTCTGGCCATGAAAAAGGAAAGCATCCAGACAAGGAAAAGGAAGCC GAAAAACATTACCAAAGGCAAAACCTCAACAGGGTCCACCACTTCGGCCACGAACTCCCCTTCTTCCATTACGAACTCA GACAGCACGGTCACTTTAAAGTCAGAGCCCAGCACAACCTCACAGTACCCCGGACAAGGCATTGTGTCGGTGTCCCAGG CACAGAGCCAGTCAGACGAGGCGCTGGCCGGCGGCGAGTTCAAATTCGAGCCGGAGGACTACCCCTTTTCTCCCAGCAG CATGGCCCCGCAGCCAGGGCTGAGCGTGCCACTGCGGCAGGACTCGTGGTGTGCCCTGGCGCTCGCCTAG
Citation	Caramai N. Kamei, Hervé Kempf, Ronit Yelin, Georges Dauod, Richard G. James, Andrew B. Lassar, Clifford J. Tabin, Thomas M. Schultheiss. Promotion of avian endothelial cell differentiation by GATA transcription factors. Dev Biol. 2011 May 1; 353(1): 2937.
Copyright	Copyright © 2011 Elsevier Inc. All rights reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205421.1 ).

no images

Entry 3

GEISHA Id	Gata‐5.Afrakhte.2004	Data Source	Publication
Complete cDNA Template Probe	show ATGTATCAGGGCCTGGCCCTCGCCCCCAACCATGGCCAGTCGGCTTATTCCCACGACTCCGGCAATTTCCTGCACTCGT CGGCCGGCTCGCCCGTCTACGTGCCCACCACCCGGGTGCCCTCCGTGCTGCAGACGCTGCCCTACCTGCAAAGCTGCGA GCCGCACCAGAGCCACCTCGGCAACCCCCCGGGCTGGGCGCAGAGCAGCGGCGAAACCACCGCCTTCAACGCCGGCAGC CCGCACCCGCCGTCGGGTTTCTCGTACCCCCACAGCCCCCGGGCAGCAGCCCCCCGGGGCGTGGACGGTGCCTACCAGG GGCCCCTGCTGCTGGGCGGCGGGGGCCGGGAGCAGTACGGCAACGCTTTGGTGCGCTCGGTTAACGGGTCCTACTCCAG CCCCTACCCCGCCTACGTGACCCCCGAGCTACCGCCTTCGTGGACGGCCGGACACTTTGAGAGCAGCGTGCTGCACAGC CTGCAGACGAGGCAGGCGGCCCTGCCCGGCCGCAGGTCAACCTTCGAGTATTTGGAGGAGTTCCCCGGGGATGGTCGGG AGTGCGTGAACTGCGGGGCCATGTCCACACCGCTCTGGAGGAAGGACGGCACCGGGCACTACCTGTGCAACGCCTGTGG GCTCTACCACAAAATGAACGGCATCAACCGGCCACTCAAACCCCAGAAGAGGCTGTCTTCATCGAGACGTGCTGGCCTA TGTTGCACTAACTGCCACACAACCAACACCACCCTCTGGAGAAGGAACGCCGAAGGGGAGCCCGTCTGCAACGCCTGCG GCTTGTACATGAAGCTCCATGGGGTACCAAGACCTCTGGCCATGAAAAAGGAAAGCATCCAGACAAGGAAAAGGAAGCC GAAAAACATTACCAAAGGCAAAACCTCAACAGGGTCCACCACTTCGGCCACGAACTCCCCTTCTTCCATTACGAACTCA GACAGCACGGTCACTTTAAAGTCAGAGCCCAGCACAACCTCACAGTACCCCGGACAAGGCATTGTGTCGGTGTCCCAGG CACAGAGCCAGTCAGACGAGGCGCTGGCCGGCGGCGAGTTCAAATTCGAGCCGGAGGACTACCCCTTTTCTCCCAGCAG CATGGCCCCGCAGCCAGGGCTGAGCGTGCCACTGCGGCAGGACTCGTGGTGTGCCCTGGCGCTCGCCTAG
Citation	Afrakhte M, Schultheiss TM. Construction and analysis of a subtracted library and microarray of cDNAs expressed specifically in chicken heart progenitor cells. Dev Dyn. 2004 Jun;230(2):290-8.
Copyright	Copyright © 2004 Wiley‐Liss, Inc.
Comments	The complete cDNA template sequence was obtained from the information in the publication as described in Afrakhte et al. 2004.