GEISHA - A Chicken Embryo Gene Expression Database
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RXRA
retinoid X receptor alpha

Gene
Official SymbolRXRA
Official Full Nameretinoid X receptor alpha
CGNC ID1890
also known asretinoic acid receptor RXR-alpha
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
Gallus-Browse
Sequence Information
Genomic
RNAXM_003642291
PolypeptideXP_003642339
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST Profile
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene417143
Ensembl GeneENSGALG00000002626
KEGGgga:417143

Entry 1

GEISHA Idpgp1n.pk002.k3Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
CGCCGTGTGTGTGTGTGTGTGTGTTTTTCGCCGCCGCCGCCGCTCTCCACCGAGCCCCTTGGCATGAGTTAAGCACCAG
CGATGGACACCAAACACTTCCTGCCACTGGATTTCTCAAACCAAGTCAATTCCACATCCCTGAACTCCCCGACGAGCCG
AGGCCCCATGGCCACCCCATCCCTGCACCCGTCCATCGGGCCGGGCATCGGCTCCTCGCTGGGCTCCCCGGGCCAGCTG
CACTCACCCATCAGCACCCTGAGCTCACCCATCAATGGCATGGGGCCACCCTTCTCCGTCATCAGCTCCCCCATGGGCC
CACACTCGATGTCTGTCCCCTCCACGCCCAGCCTGGGATTCGGCACCAGCAGCCCACAGCTCAACTCACCCATGAACCC
CGTCAGCAGCTCAGAAGACATCAAGCCACCCCTGGGGCTCAATGGAGTCCTCAAAGTGCCAGCACATCCCTCAGGAACA
ATGGCCTCCTTCACCAAGCACATATGTGCCATCTGCGGGGACAGATCTTCAGGTAAACATTATGGGGTGTACAGCTGCG
AGGGCTGCAAAGGCTTCTTCAAACGCACGGTGAGGAAGGACCTGACCTACACCTGCCGTGACAACAAGGACTGCTTGAT
TGACAAGCGCCAGCGCAACCGCTGCCAGTACTGCCGCTA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
Face Mesenchyme
Spinal Cord
Tail
 
13-18
stage 17
Face Mesenchyme
Spinal Cord
 
19-22
stage 19
stage 19
stage 19
stage 22
Eye
Face Mesenchyme
Hindbrain
Leg Mesenchyme
Limb Buds
Pharyngeal Arches and Clefts
Somites
Spinal Cord
Tail
 

Entry 2

GEISHA IdRXRa.Cui.2003Data SourcePublication
Complete cDNA Template Probeshow
GGGATCCTGCTGGCCACGGGGCTGCACGTGCACCGCAACAGCGCGCACAGCGCCGGTGTCGGGGCCATCTTTGACAGAG
TACTGACAGAACTCGTGTCGAAGATGCGAGACATGCAGATGGACAAGACAGAGCTGGGCTGCCTGCGAGCCATCGTCCT
CTTCAACCCCGACTCAAAAGGTCTCTCCAACCCGGCTGAAGTGGAGGCATTACGGGAGAAGGTGTACGCATCGCTGGAG
GCGTATTGCAAGCACAAATACCCCGACCAGCCCGGGAGGTTCGCCAAGCTCCTGCTCCGTCTGCCAGCCCTACGGTCCA
TCGGCCTCAAATGCCTGGAGCACCTCTTCTTCTTCAAGCTAATAGGCGACACGCCGATCGACACCTTCTTGATGGAAAT
GCTGGAAGCACCCCATCAAATGACTTAGAGAACTGCCGCTGGCTCAGTCCCTCACCCGGCCAGGGCCACGCGGGCTCCG
TCCTCTGCTTCCTCCTCCTCAGCCCCAGCCCCCTTCCCTCTGCTCCCCAAATGCTGGAGGCACCGTCCGAGCTTCTCCG
CCTGGTCCCCGGGGCGAACCCGCACCTCCTTGCCGCCTCCTCACGTTGACCCTTCTGTCCGTTCGCTGTCACTGCTGCA
TCTAAAGACCTCTGATGGCTGT
CitationCui, J, Michaille, JJ, Jiang, W, Zile, MH. Retinoid receptors and vitamin A deficiency: differential patterns of transcription during early avian development and the rapid induction of RARs by retinoic acid. Dev Biol. 2003 Aug 15;260(2):496-511.
Copyright"Reprinted from Developmental Biology, 260, Cui, J, Michaille, JJ, Jiang, W, Zile, MH, Retinoid receptors and vitamin A deficiency: differential patterns of transcription during early avian development and the rapid induction of RARs by retinoic acid. 496-511, Copyright (2003), with permission from Elsevier". Copyright © 2003 Elsevier B.V. All rights reserved.
CommentsAccording to the authors, Antisense riboprobes were prepared from chicken RXRα (nt 1936–2589) [Seleiro et al 1995]. The sequence below was obtained from that paper.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
Widespread Expression
Comparison of several genes
7-11
stage 7
stage 7
stage 8
stage 8
stage 11
Endoderm
Neural Crest
Splanchnic Mesoderm
Surface Ectoderm
Widespread Expression
Comparison of several genes
Precardiac region

Entry 3

GEISHA IdRXRα.Hoover.1998Data SourcePublication
Complete cDNA Template Probeshow
ATCCTGCTGGCCACGGGGCTGCACGTGCACCGCAACAGCGCGCACAGCGCCGGTGTCGGGGCCATCTTTGACAGAGTAC
TGACAGAACTCGTGTCGAAGATGCGAGACATGCAGATGGACAAGACAGAGCTGGGCTGCCTGCGAGCCATCGTCCTCTT
CAACCCCGACTCAAAAGGTCTCTCCAACCCGGCTGAAGTGGAGGCATTACGGGAGAAGGTGTACGCATCGCTGGAGGCG
TATTGCAAGCACAAATACCCCGACCAGCCCGGGAGGTTCGCCAAGCTCCTGCTCCGTCTGCCAGCCCTACGGTCCATCG
GCCTCAAATGCCTGGAGCACCTCTTCTTCTTCAAGCTAATAGGCGACACGCCGATCGACACCTTCTTGATGGAAATGCT
GGAAGCACCCCATCAAATGACTTAGAGAACTGCCGCTGGCTCAGTCCCTCACCCGGCCAGGGCCACGCGGGCTCCGTCC
TCTGCTTCCTCCTCCTCAGCCCCAGCCCCCTTCCCTCTGCTCCCCAAATGCTGGAGGCACCGTCCGAGCTTCTCCGCCT
GGTCCCCGGGGCGAACCCGCACCTCCTTGCCGCCTCCTCACGTTGACCCTTCTGTCCGTTCGCTGTCACTGCTGCATCT
AAAGACCTCTGATGGCTGT
CitationHoover F, Glover JC. Regional pattern of retinoid X receptor-alpha gene expression in the central nervous system of the chicken embryo and its up-regulation by exposure to 9-cis retinoic acid. J Comp Neurol. 1998 Sep 7;398(4):575-86.
Copyrightcopyright @1998 WILEY-LISS, INC.
CommentsThe complete cDNA template sequence was obtained from the information in the publication as described in Hoover et al.1998.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 11
stage 11
Neural Plate/Tube
Rhombomeres
neuroepithelium
13-18
stage 16
stage 16
Neural Plate/Tube
Rhombomeres
neuroepithelium
19-24
stage 19
stage 19
stage 19
stage 19
stage 22
stage 22
stage 22
stage 22
stage 22
Hindbrain
Limb Buds
Neural Crest
Neural Plate/Tube
Peripheral Nervous System
Rhombomeres
Spinal Cord
neuroepithelium
31-44
stage 44
stage 44
stage 44
  

Mouse

Emage
Eurexpress
MGI GXD

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
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