Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

ATF3
activating transcription factor 3

Gene

Official Symbol	ATF3
Official Full Name	activating transcription factor 3
CGNC ID	7459
also known as	cyclic AMP-dependent transcription factor ATF-3
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_419429
Polypeptide	XP_419429
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	467	ENSG00000162772		MIM:603148
Mouse	11910	ENSMUSG00000026628	All phenotypic alleles (4):Targeted, knock-out(2) Targeted, other(2)	MGI:109384
Xenopus	100494437, 447311			6085250
Zebrafish	393939	ENSDARG00000007823	ZDB-GENE-040426-728	ZFIN:ZDB-GENE-040426-728

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	421369
Ensembl Gene
KEGG	gga:421369

Entry 1

GEISHA Id	ATF3.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TTATAAAAGCTTGCGGCCGCAGAATATTCAGCGCCTCCGCAATTGTCC
Reverse cDNA Template Primer	GCTCTAGAAATTAACCCTCACTAAAGGGCTTTCCCTGACAGCCACAAGGA	cDNA Template Length	911
Forward cDNA Template Probe	show CCCCCGGGCCCTCACAGGNAAAGTNTGTCCATCCAGCACAGCGGGTATGTACCATGTGCATCATCGAAGTCATAGTGTT CTAGCACAAACGTCGTGAGTGCAGATACTGTATACTAGCAGAGAGCTAAATCTTCTGAAGCTGTTGTCTGTAGCTCCTA GGAACAGCATGTATGACAGGTGCAAAACCTATTATGAGGCAGAAGGCTCTTCAGTTGGACCGAGACCAGATCTTCCGAG GGGAAGAATCTCTGACAAGCCAAAAATGATTTGTTCTGCTTAAGAAAGCGATCTGCCCTTCCTAAACGCTCTTTACTAT TAGAATCCTACACATAAGTCAGATCCTCTGTGGATTCTGTTGCTGTTAAAACATACTAGAAATATTTCCACATTTTCCG TATCACTTAACCTTGTAATGTTCCTTCTTTGATCTGTTGAATAAAAAGATTCCTTTCATCTTCAGGTGTCCTTCCATTT TGTGCCCGGACTATACAGGTGGGCCTGTGAAGATTTAGCATGTATATCAAATGCTGCTTCTCATTCTTTAGCTCTTCAA TCTGGGCTTTTAATTCCGCATTGATAGTCTCCAGCTTTTCTGATTCTTTCTGCAAACATTCTGTTTTTTCCTTCTTTTT GTTTCGGCACTTTGCAGCAGCAATTTTGTTCCTTTCCCTTCTTCGCTTTTTTCTTTCATCCTCTTCAGGAGAAAACTCC GTTTTCATGATCGATGTTTCCATCGGCCTTTCGGACACTGTCACCGTATCCAAAGTAGAAGACATCCTGTGGGACTGAC GTTTGTTTTGGATGGCGAATCTAAGTTCCTCTTTCACCAGTGGGGTTAGATTTGTGAAATCATCAAACCCCAGTGACCC TGCAGGGGACAAAGTGGGGACAATTGCGGAGGCGCTGAATATTCTGCGGCCGCAGCCTTTTAAAAAA

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

stage 6

Early Mesoderm
Germinal Crescent
Headfold
Lateral Plate Mesoderm

7-12

stage 8

stage 9

stage 10

stage 11

Anterior Intestinal Portal
Anterior/Second Heart Field
Intermediate Mesoderm
Lateral Plate Mesoderm

13-18

stage 13

stage 16

stage 17

Anterior Intestinal Portal
Blood Vessels
Gut
Intermediate Mesoderm
Lateral Plate Mesoderm
Nephric Ducts
Pharyngeal Arches and Clefts

19-24

stage 21

stage 23

Gut
Nephric Ducts
Nephric Tubules
Outflow Tract
Pharyngeal Arches and Clefts
Tail

stage 25

Gut
Liver
Nephric Ducts

Entry 2

GEISHA Id	ATF3.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show ATTTGACAAGTCCTAGTAGGTGTGACAAAGAAAGGTTTCTTGCAAACTACCCATGTAGCTAAGTTGGTATTTTAGGAGC TGGAACCCCACCTATTATCCTTTGGGAAATACAGTGTTTCCTTGCATTCAATAGAGCATTTTGTACCATCACTTGGCAA CTGGGTGAATTGGACCCACTGTAAAGAGGGAAGTAACTACGAAGGGATTTTGATACGGTTTTGCCCAAGCAAAGAACTG CAGGACTGAATCCCAGGTTCATGAATCATGAAAAGTTTAAAATAAACCAAAATCATCTGGGATCTAATCCTACAAGCCT TAACCCTCACCGACACAAGAGGTTCCATGGCCTGTAGTGATCTGGTTATACAGATGGCTGTCAGGAGTAAGATGTGGAC AAGGCTTTTTCCGTCCTTGTCAGGATTGCTTCCTTTTGCCAGATGATTCAGAGGGAAAAATTATGATTGCAGCTACTTT TATTTTATGTTTGGGTGGTAACTACAGTCAATCAAAAGTGTTACTTAGAATCTAAAGGAGACAAGAGTTCTGATGTAGT GAATAATTGTTCTCATTTTTTATTAAATACTAACCTTAGATGTTTCTGAACTGGTAGAAGAGCTGCTGGACAATACAGT TGGAGCTACGAGTGTTTAAATTCTGATGTTTCTGTGAAATTCTCAGATTGGTTTAATCCTACGAAATATATCCTTACAA TTTTTTGGTAAAAGAAAATATCCTTATTTATCACTAATATCATAATGAGTAAAGTTAATAAATACTGCAAGCAGATAA
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.