GEISHA - A Chicken Embryo Gene Expression Database
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LMO4
LIM domain only 4

Gene
Official SymbolLMO4
Official Full NameLIM domain only 4
CGNC ID48949
also known asLIM domain transcription factor LMO4
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
GenomicGenbank
RNANM_204112
PolypeptideNP_989443
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.2310
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly34361FBgn0032196
Human8543ENSG00000143013MIM:603129
Mouse16911ENSMUSG00000028266All phenotypic alleles (13):Targeted, knock-out(3) Targeted, other(10) MGI:109360
Xenopus448304, 447751971938
Zebrafish324849, 114412ENSDARG00000054749, ENSDARG00000013853ZDB-GENE-030131-3570, ZDB-GENE-010702-1ZFIN:ZDB-GENE-030131-3570, ZFIN:ZDB-GENE-010702-1
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene373901
Ensembl Gene
KEGGgga:373901

Entry 1

GEISHA Idpgf2n.pk006.p16Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GGCGAGGAAACCTCCGCGGTGCCCCCGAGCGGCGCTGCCCGGCCCCGCAGACCACCGAGGGGAAGCAGCAGGCCATGGT
GAACCCCGGCGGCAGCGCGCAGCCGCCCCCGGTGACGGCGGGCTCCCTCTCGTGGAAGAGGTGCGCCGGCTGCGGGGGG
AAGATCGCCGACCGCTTCCTGCTCTACGCCATGGACAGCTACTGGCACAGCCGCTGCCTCAAGTGCTCCTGCTGCCAGG
CCCAGCTGGGGGACATCGGCACGTCCTGCTACACCAAGAGCGGCATGATCCTCTGCAGAAACGACTATATCAGGTTATT
TGGAAATAGTGGTGCTTGCAGTGCCTGCGGACAGTCCATTCCTGCTAGTGAGCTGGTCATGAGGGCACAGGGCAATGTC
TATCATCTGAAGTGTTTTACATGCTCTACCTGCCGGAATCGCCTGGTCCCGGGAGATCGGTTTCACTACATCAATGGCA
GTTTATTTTGTGAACATGATAGACCTACAGCTCTCATCAATGGCCATTTGAATTCACTTCAGAGTAACCCACTACTGCC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 7
stage 7
stage 8
Head Mesenchyme
Hensen's Node
Neural Plate/Tube
Primitive Streak
Unlabeled
 
13-18
stage 15
stage 16
stage 17
Cranial PNS
Ear/Otic Placcode
Forebrain
Foregut
Head Mesenchyme
Placcode
Spinal Ganglia and Nerves
 
19-22
stage 19
stage 21
stage 21
stage 22
stage 22
stage 22
Allantois
Blood Vessels
Cranial Nerve
Cranial PNS
Face Mesenchyme
Foregut
Heart
Notochord
Outflow Tract
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Spinal Ganglia and Nerves
Splanchnic Mesoderm
Valves
 

Entry 2

GEISHA IdLMO4.Abellan.2009Data SourcePublication
Complete cDNA Template Probeshow
CCCGCAGACCACCGAGGGGAAGCAGCAGGCCATGGTGAACCCCGGCGGCAGCGCGCAGCCGCCCCCGGTGACGGCGGGC
TCCCTCTCGTGGAAGAGGTGCGCCGGCTGCGGGGGGAAGATCGCCGACCGCTTCCTGCTCTACGCCATGGACAGCTACT
GGCACAGCCGCTGCCTCAAGTGCTCCTGCTGCCAGGCCCAGCTGGGGGACATCGGCACGTCCTGCTACACCAAGAGCGG
CATGATCCTCTGCAGAAACGACTATATCAGGTTATTTGGAAATAGTGGTGCTTGCAGTGCCTGCGGACAGTCCATTCCT
GCTAGTGAGCTGGTCATGAGGGCACAGGGCAATGTCTATCATCTGAAGTGTTTTACATGCTCTACCTGCCGGAATCGCC
TGGTCCCGGGAGATCGGTTTCACTACATCAATGGCAGTTTATTTTGTGAACATGATAGACCTACAGCTCTCATCAATGG
CCATTTGAATTCACTTCAGAGTAACCCACTACTGCCAGACCAGAAGGTCTGCTAAAAGGTCAGAGTATTGCAGAATGCG
TGCCTTCATCTCAAATTTTGTTCATCACAGATGGATCCCATGTCTCCAAGTAGACAAGTCACCTTTGTAGCTAGCATCA
GTGCCAGCTCCATACCATTGCACCTTCTTTATTCTTGATTGCCCTTCCCACATTTATTGGTGTATTAAAATGACTGAAT
ATGAACATTAAGGACTCCATGAACCTGGGCTAATGGGAGACTGTAGAGAAAATGAAAAAAG
CitationAbellán A, Legaz I, Vernier B, Rétaux S, Medina L. Olfactory and amygdalar structures of the chicken ventral pallium based on the combinatorial expression patterns of LIM and other developmental regulatory genes. J Comp Neurol. 2009 Sep 20;516(3):166-86.
CopyrightCopyright © 2009 Wiley-Liss, Inc.
CommentsThe sequence below was obtained from NCBI (acc # AF532926.1 - Showing 771 bp region from base 307 to 1078) using the information provided in the publication.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-44
stage 35
stage 35
stage 35
stage 40
stage 40
stage 40
stage 42
stage 42
stage 42
stage 42
stage 44
stage 44
stage 44
stage 44
stage 44
stage 44
Telencephalon
Posthatch animals (PO)
frontal section
oblique horizontal section
oblique horizontal section

Entry 3

GEISHA IdLMO4.Ferronha.2013Data SourcePublication
Complete cDNA Template Probeshow
CGGCGGGCCGCGGCCGCTCGGCTCCGCGCCGCGGGAACTCGGCCGCCGCCGGAGCCCGGCGGAGGGGCGGAGGTGGGGG
CGGGGGGAGCGGCGCGAAGTGCGGCCGCGGCGCCAAACTTGCGGCGGCGGCGGCGGCCCCTGCGCGTGCGGCTCCGCGG
GGCCGGAGGGCGGCGGGCGCCCATCAGCGCCGTCTCCGCGTTTGTCCGGCCCGGACCGGGGGCTGCCGAAGGGCGGGCG
GGCGGCGGGCGCCGCGCTCGGTTCGCGGCGAGGAAACCTCCGCGGTGCCCCCGAGCGGCGCTGCCCGGCCCCGCAGACC
ACCGAGGGGAAGCAGCAGGCCATGGTGAACCCCGGCGGCAGCGCGCAGCCGCCCCCGGTGACGGCGGGCTCCCTCTCGT
GGAAGAGGTGCGCCGGCTGCGGGGGGAAGATCGCCGACCGCTTCCTGCTCTACGCCATGGACAGCTACTGGCACAGCCG
CTGCCTCAAGTGCTCCTGCTGCCAGGCCCAGCTGGGGGACATCGGCACGTCCTGCTACACCAAGAGCGGCATGATCCTC
TGCAGAAACGACTATATCAGGTTATTTGGAAATAGTGGTGCTTGCAGTGCCTGCGGACAGTCCATTCCTGCTAGTGAGC
TGGTCATGAGGGCACAGGGCAATGTCTATCATCTGAAGTGTTTTACATGCTCTACCTGCCGGAATCGCCTGGTCCCGGG
AGATCGGTTTCACTACATCAATGGCAGTTTATTTTGTGAACATGATAGACCTACAGCTCTCATCAATGGCCATTTGAAT
TCACTTCAGAGTAACCCACTACTGCCAGACCAGAAGGTCTGCTAAAAGGTCAGAGTATTGCAGAATGCGTGCCTTCATC
TCAAATTTTGTTCATCACAGATGGATCCCATGTCTCCAAGTAGACAAGTCACCTTTGTAGCTAGCATCAGTGCCAGCTC
CATACCATTGCACCTTCTTTATTCTTGATTGCCCTTCCCACATTTATTGGTGTATTAAAATGACTGAATATGAACATTA
AGGACTCCATGAACCTGGGCTAATGGGAGACTGTAGAGAAAATGAAAAAAGCTCGTGC
CitationFerronha T, Rabadán MA, Gil-Guiñon E, Le Dréau G, de Torres C, Martí E. LMO4 is an essential cofactor in the Snail2-mediated epithelial-to-mesenchymal transition of neuroblastoma and neural crest cells. J Neurosci. 2013 Feb 13;33(7):2773-83.
CopyrightCopyright @ 2013 by the Society of Neuroscience
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. #NM_204112.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
stage 10
stage 10
stage 10
stage 10
stage 10
stage 10
Central Nervous System
Neural Crest
Neural Plate/Tube
Primitive Streak
 
13-14
stage 14
Neural Crest
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.2310

Mouse

EmageMGI:109360
EurexpressMGI:109360
MGI GXDMGI:109360

Frog

Xenbase971938

Fruit Fly

BDGPFBgn0032196

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-030131-3570, ZDB-GENE-010702-1
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