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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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CDH20
cadherin 20, type 2

Gene

Official Symbol	CDH20
Official Full Name	cadherin 20, type 2
CGNC ID	9773
also known as	cadherin-20\|F-cadherin short isoform\|MN-cadherin, cadherin 20, type 2
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_204134
Polypeptide	NP_989465

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	28316	ENSG00000101542		MIM:605807
Mouse	23836	ENSMUSG00000050840	All phenotypic alleles (2):Targeted, other(2)	MGI:1346069
Xenopus	100498629, 100192361			1011619
Zebrafish

Gene Ontology

Molecular Function	calcium ion binding
Biological Process	homophilic cell adhesion
Cellular Component	integral component of membrane, plasma membrane

Links to other databases

Entrez Gene	373927
Ensembl Gene
KEGG	gga:373927

Entry 1

GEISHA Id	CDH20.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	CCAGATTTCCACAGAAGCACTACC
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGGCCGTGTTGTCTTGATTGTCCC	cDNA Template Length	844
Forward cDNA Template Probe	show AAATTGGGGTGTTGGCTGCCTCTGNAGCCAGGACTGTAGTAGAAGTGCTGACCCTCCTGGTGGGTCATCCCGGTCAATG GCGCTCACTGTCTGGATCAGCTGTCCTGCTTTGGCATTTTCACAAACAAAAGCTTCGTAGAACCTCGCAAACTCCGGCG CGTTGTCGTTCACATCCAGGACTTTCACCGTGACGGAGACGCTGCCCACCTGTGAGGGGTTGTTCAGCTCCATGGCCAG CACTGTGATGTTGTGCCAGGAAACGTCCTCCCGGTCCAGAGGTCTTGCAGTCATCAGTGCTCCTGAAGTGATGTCAACA TAGAAGAACCTCCCTGGATCACTGCTCCTGTCAATCGAGTACCTGATTGAATTGTTGGTCACATCTGGGTCCTTGGCAG AAATGATCTGTATGGTGGCCCCAATCTCCACGTCCTCAGGCACCTCCACAAAGTAAAAACTGGGCTCGAACANAGGAGG CTCATCCACATCCTCCACACTGATGTGAACGGTGGTGGTGTCTCGGAAAGGACCCAGGTTCAGGAAGCGCATCTCCAGG TGGGGGTTGGCACCTTCTACTTTCAAGGTATAGCTTTTCTTGCTTTCAAAGCTTAAAGGCTTTCTCACAGTTATGATGC CAACTTGGTAATTAGGATCGGTATTAATATCAAAGACATCCAGTCCATCTCCATCNACCAGGCTGTACTTCATCTCCGC GTTAATGCCTTCGTCCAAGTCTTTAGCAACCACGCGGCCCACGGTGGAGCTGACGGGAGCANACTCCAGCACACTCATC TGGTAGTGCTTCTGTGGAAA

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

stage 6

Early Mesoderm
Neural Plate/Tube
Paraxial Mesoderm

7-12

stage 7

stage 10

stage 11

Paraxial Mesoderm
Somites

13-18

stage 17

Facial Muscles
Hindbrain
Intermediate Mesoderm
Notochord
Paraxial Mesoderm
Somites

19-24

stage 23

stage 24

Hindbrain
Hindgut
Midbrain
Spinal Cord

caeca

stage 25

Foregut
Hindbrain
Hindgut
Mesonephros
Spinal Cord

caeca

Entry 2

GEISHA Id	Cad20.Jiankai.2007	Data Source	Publication
Complete cDNA Template Probe	show GTGTGGAACCAGTTCTTCGTTCTGGAGGAGTACACAGGAACGGATCCTCTCTATGTTGGGAAGCTCCACTCCGACATGG ACAGAGGAGATGGTTCCATCAAATACATCCTCTCAGGAGAGGGAGCTGGCATCGTGTTTACAATTGATGATACCACGGG GGACATTCATGCCATTCAGAGACTGGACAGAGAAGAAAGGTCACAGTATACCCTGAGAGCACAGGCTCTTGACAGACGA ACAGGCCGGCCGATGGAACCGGAGTCTGAGTTCATCATCAAAATCCAAGACATCAATGACAATGAGCCCAAGTTCCTGG ATGGACCTTATGTGGCCTCTGTTCCAGAAATGTCACCTGTGGGCACCTCTGTTATCCAGGTGACAGCAACAGATGCTGA TGACCCAACCTATGGGAACAGCGCAAGAGTTGTGTACAGCATTCTCCAAGGACAGCCATATTTCTCTGTGGACTCTCGG ACAGGCTTAATTAGGACAGCTCTGATGAACATGGACAGAGAAGCAAAAGAGTATTACGAAGTGATTGTCCAGGCCAAGG ATATGGGCGGACAGCTGGGAGGATTAGCTGGAACAACCACAGTCAACATCACGCTCTCTGATGTCAATGACAACCCACC CAGATTTCCACAGAAGCACTACCAGATGAGTGTGCTGGAGTCTGCTCCCGTCAGCTCCACCGTGGGCCGCGTGGTTGCT AAAGACTTGGACGAAGGCATTAACGCGGAGATGAAATACAGCCTGGTGGATGGAGATGGACTGGATGTCTTTGATATTA ATACCGATCCTAATTACCAAGTTGGCATCATAACTGTGAGAAAGCCTTTAAGCTTTGAAAGCAAGAAAAGCTATACCTT GAAAGTAGAAGGTGCCAACCCCCACCTGGAGATGCGCTTCCTGAACCTGGGTCCTTTCCGAGACACCACCACCGTTCAC ATCAGTGTGGAGGATGTGGATGAGCCTCCTGTGTTCGAGCCCAGTTTTTACTTTGTGGAGGTGCCTGAGGACGTGGAGA TTGGGGCCACCATACAGATCATTTCTGCCAAGGACCCAGATGTGACCAACAATTCAATCAGGTACTCGATTGACAGGAG CAGTGATCCAGGGAGGTTCTTCTATGTTGACATCACTTCAGGAGCACTGATGACTGCAAGACCTCTGGACCGGGAGGAC GTTTCCTGGCACAACATCACAGTGCTGGCCATGGAGCTGAACAACCCCTCACAGGTGGGCAGCGTCTCCGTCACGGTGA AAGTCCTGGATGTGAACGACAACGCGCCGGAGTTTGCGAGGTTCTACGAAGCTTTTGTTTGTGAAAATGCCAAAGCAGG ACAGCTGATCCAGACAGTGAGCGCCATTGACCGGGATGACCCACAGGAGGGTCAGCACTTCTACTACAGCCTGGCTCCA GAGGCAGCCAACAACCCCAATTTTACTCTGAGGGACAATCAAGACAACACGGCATGGATTTTGACGAGGCGCTCTGGCT TCAGGCAGCACGAGCAGAACATCTTTTACCTCCCCATCCTGATCAGCGACAACGGCCGCCCTGTGCTGAGCAGCACAGG CACGCTGACCGTGCACGTGTGCAGCTGTGACGAAGGTGGCATGGTGATGTCCTGCAATGCTGAGGCCTACGTCCTCCCC GTCAGCCTGAGCAGAGGGGCACTCATTGCAATCCTCGCCTGCATATTTGTCCTGCTAGTGCTGGTGCTCCTCATCCTCT CCATGCGGCGCCAGAGGAAACAGCCATACATCATTGACGAGGAGGAGAACATCCATGAGAACATCGTCAGGTACGACGA TGAAGGCGGCGGGGAGGAGGACACTGAGGCCTTTGATATCGCCGCCATGTGGAACCCCCGGGAGGCCCAGCTTGTGGTG AAAAACAGGCAGGACATGCTCCCTGAGATAGAGAGCCTCTCCAGATACGTGCCTCAGGCGTGCATCATGGACAACAACG TCCACAACTACGTGCTCGCCAAGCTGTATGAGGCTGACATGGACCTCTGGGCTCCTCCCTTCGACTCCCTCCAGACGTA TATG
Citation	Luo J, Wang H, Lin J, Redies C. Cadherin expression in the developing chicken cochlea. Dev Dyn. 2007 Aug;236(8):2331-7.
Copyright	Copyright © 2007 Wiley-Liss, Inc.
Comments	The accession number given in the paper is NM_204134. The primers are: 5-ggaattcgtktggaaycarttytt-3 5-ggaattcrtabctctgsagggartc-3. The probe sequence was excerpted from the full length cDNA sequence.