GEISHA - A Chicken Embryo Gene Expression Database
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CDH20
cadherin 20, type 2

Gene
Official SymbolCDH20
Official Full Namecadherin 20, type 2
CGNC ID9773
also known ascadherin-20|F-cadherin short isoform|MN-cadherin, cadherin 20, type 2
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204134
PolypeptideNP_989465
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.3665
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human28316ENSG00000101542MIM:605807
Mouse23836ENSMUSG00000050840All phenotypic alleles (2):Targeted, other(2) MGI:1346069
Xenopus100498629, 1001923611011619
Zebrafish
Gene Ontology
Molecular Functioncalcium ion binding
Biological Processhomophilic cell adhesion
Cellular Componentintegral component of membrane, plasma membrane
Links to other databases
Entrez Gene373927
Ensembl Gene
KEGGgga:373927

Entry 1

GEISHA IdCDH20.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerCCAGATTTCCACAGAAGCACTACC
Reverse cDNA Template PrimerATTAACCCTCACTAAAGGGCCGTGTTGTCTTGATTGTCCCcDNA Template Length844
Forward cDNA Template Probeshow
AAATTGGGGTGTTGGCTGCCTCTGNAGCCAGGACTGTAGTAGAAGTGCTGACCCTCCTGGTGGGTCATCCCGGTCAATG
GCGCTCACTGTCTGGATCAGCTGTCCTGCTTTGGCATTTTCACAAACAAAAGCTTCGTAGAACCTCGCAAACTCCGGCG
CGTTGTCGTTCACATCCAGGACTTTCACCGTGACGGAGACGCTGCCCACCTGTGAGGGGTTGTTCAGCTCCATGGCCAG
CACTGTGATGTTGTGCCAGGAAACGTCCTCCCGGTCCAGAGGTCTTGCAGTCATCAGTGCTCCTGAAGTGATGTCAACA
TAGAAGAACCTCCCTGGATCACTGCTCCTGTCAATCGAGTACCTGATTGAATTGTTGGTCACATCTGGGTCCTTGGCAG
AAATGATCTGTATGGTGGCCCCAATCTCCACGTCCTCAGGCACCTCCACAAAGTAAAAACTGGGCTCGAACANAGGAGG
CTCATCCACATCCTCCACACTGATGTGAACGGTGGTGGTGTCTCGGAAAGGACCCAGGTTCAGGAAGCGCATCTCCAGG
TGGGGGTTGGCACCTTCTACTTTCAAGGTATAGCTTTTCTTGCTTTCAAAGCTTAAAGGCTTTCTCACAGTTATGATGC
CAACTTGGTAATTAGGATCGGTATTAATATCAAAGACATCCAGTCCATCTCCATCNACCAGGCTGTACTTCATCTCCGC
GTTAATGCCTTCGTCCAAGTCTTTAGCAACCACGCGGCCCACGGTGGAGCTGACGGGAGCANACTCCAGCACACTCATC
TGGTAGTGCTTCTGTGGAAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
stage 6
Early Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
 
7-12
stage 7
stage 7
stage 10
stage 11
stage 11
stage 11
Paraxial Mesoderm
Somites
 
13-18
stage 17
stage 17
stage 17
stage 17
Facial Muscles
Hindbrain
Intermediate Mesoderm
Notochord
Paraxial Mesoderm
Somites
 
19-24
stage 23
stage 24
Hindbrain
Hindgut
Midbrain
Spinal Cord
caeca
25
stage 25
stage 25
stage 25
stage 25
Foregut
Hindbrain
Hindgut
Mesonephros
Spinal Cord
caeca

Entry 2

GEISHA IdCad20.Jiankai.2007Data SourcePublication
Complete cDNA Template Probeshow
GTGTGGAACCAGTTCTTCGTTCTGGAGGAGTACACAGGAACGGATCCTCTCTATGTTGGGAAGCTCCACTCCGACATGG
ACAGAGGAGATGGTTCCATCAAATACATCCTCTCAGGAGAGGGAGCTGGCATCGTGTTTACAATTGATGATACCACGGG
GGACATTCATGCCATTCAGAGACTGGACAGAGAAGAAAGGTCACAGTATACCCTGAGAGCACAGGCTCTTGACAGACGA
ACAGGCCGGCCGATGGAACCGGAGTCTGAGTTCATCATCAAAATCCAAGACATCAATGACAATGAGCCCAAGTTCCTGG
ATGGACCTTATGTGGCCTCTGTTCCAGAAATGTCACCTGTGGGCACCTCTGTTATCCAGGTGACAGCAACAGATGCTGA
TGACCCAACCTATGGGAACAGCGCAAGAGTTGTGTACAGCATTCTCCAAGGACAGCCATATTTCTCTGTGGACTCTCGG
ACAGGCTTAATTAGGACAGCTCTGATGAACATGGACAGAGAAGCAAAAGAGTATTACGAAGTGATTGTCCAGGCCAAGG
ATATGGGCGGACAGCTGGGAGGATTAGCTGGAACAACCACAGTCAACATCACGCTCTCTGATGTCAATGACAACCCACC
CAGATTTCCACAGAAGCACTACCAGATGAGTGTGCTGGAGTCTGCTCCCGTCAGCTCCACCGTGGGCCGCGTGGTTGCT
AAAGACTTGGACGAAGGCATTAACGCGGAGATGAAATACAGCCTGGTGGATGGAGATGGACTGGATGTCTTTGATATTA
ATACCGATCCTAATTACCAAGTTGGCATCATAACTGTGAGAAAGCCTTTAAGCTTTGAAAGCAAGAAAAGCTATACCTT
GAAAGTAGAAGGTGCCAACCCCCACCTGGAGATGCGCTTCCTGAACCTGGGTCCTTTCCGAGACACCACCACCGTTCAC
ATCAGTGTGGAGGATGTGGATGAGCCTCCTGTGTTCGAGCCCAGTTTTTACTTTGTGGAGGTGCCTGAGGACGTGGAGA
TTGGGGCCACCATACAGATCATTTCTGCCAAGGACCCAGATGTGACCAACAATTCAATCAGGTACTCGATTGACAGGAG
CAGTGATCCAGGGAGGTTCTTCTATGTTGACATCACTTCAGGAGCACTGATGACTGCAAGACCTCTGGACCGGGAGGAC
GTTTCCTGGCACAACATCACAGTGCTGGCCATGGAGCTGAACAACCCCTCACAGGTGGGCAGCGTCTCCGTCACGGTGA
AAGTCCTGGATGTGAACGACAACGCGCCGGAGTTTGCGAGGTTCTACGAAGCTTTTGTTTGTGAAAATGCCAAAGCAGG
ACAGCTGATCCAGACAGTGAGCGCCATTGACCGGGATGACCCACAGGAGGGTCAGCACTTCTACTACAGCCTGGCTCCA
GAGGCAGCCAACAACCCCAATTTTACTCTGAGGGACAATCAAGACAACACGGCATGGATTTTGACGAGGCGCTCTGGCT
TCAGGCAGCACGAGCAGAACATCTTTTACCTCCCCATCCTGATCAGCGACAACGGCCGCCCTGTGCTGAGCAGCACAGG
CACGCTGACCGTGCACGTGTGCAGCTGTGACGAAGGTGGCATGGTGATGTCCTGCAATGCTGAGGCCTACGTCCTCCCC
GTCAGCCTGAGCAGAGGGGCACTCATTGCAATCCTCGCCTGCATATTTGTCCTGCTAGTGCTGGTGCTCCTCATCCTCT
CCATGCGGCGCCAGAGGAAACAGCCATACATCATTGACGAGGAGGAGAACATCCATGAGAACATCGTCAGGTACGACGA
TGAAGGCGGCGGGGAGGAGGACACTGAGGCCTTTGATATCGCCGCCATGTGGAACCCCCGGGAGGCCCAGCTTGTGGTG
AAAAACAGGCAGGACATGCTCCCTGAGATAGAGAGCCTCTCCAGATACGTGCCTCAGGCGTGCATCATGGACAACAACG
TCCACAACTACGTGCTCGCCAAGCTGTATGAGGCTGACATGGACCTCTGGGCTCCTCCCTTCGACTCCCTCCAGACGTA
TATG
CitationLuo J, Wang H, Lin J, Redies C. Cadherin expression in the developing chicken cochlea. Dev Dyn. 2007 Aug;236(8):2331-7.
CopyrightCopyright © 2007 Wiley-Liss, Inc.
CommentsThe accession number given in the paper is NM_204134. The primers are: 5-ggaattcgtktggaaycarttytt-3 5-ggaattcrtabctctgsagggartc-3. The probe sequence was excerpted from the full length cDNA sequence.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-44
stage 37
stage 40
stage 44
Ear/Otic Placcode
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.3665

Mouse

Emage
EurexpressMGI:1346069
MGI GXDMGI:1346069

Frog

Xenbase1011619

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
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