GEISHA - A Chicken Embryo Gene Expression Database
Browse By
- Anatomical Location
- Stage
- Gene Name
- GEISHA ID
- Multiple Parameters
Search
- Quick Search
Data Class
Enter Text:
go
- Gene Family QuickSearch
Transcription Factors
Growth Factors
Receptors
MicroRNAs
- Human Disease Gene Search
Documents
- Downloads
- Protocols
- About GEISHA
- Contact Us
Resources
- Transgenic Birds
- Model Organism Databases
- Gene Expression Databases
- Genomic Resources
- Anatomical Atlases
- Chicken Stage Series
_

PRRX1
paired related homeobox 1

The human orthologue of this gene is associated
with the following human disease:
Gene
Official SymbolPRRX1
Official Full Namepaired related homeobox 1
CGNC ID48968
also known asPMX1, Prx-1, Prx1, gMHox, paired mesoderm homeobox protein 1|homeobox protein MHOX|paired-related homeobox protein 1|paired-related homeotic gene product|transcription factor Prx1b, Paired mesoderm homeobox protein 1 , Homeobox protein MHOX, GMHOX, Homeobox protein PRX-1, MHOX, PRX-1
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001007821
PolypeptideNP_001007822
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.1546
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human5396ENSG00000116132MIM:202650MIM:167420
Mouse18933ENSMUSG00000026586All phenotypic alleles (6):Targeted, knock-out(1) Targeted, other(5) MGI:97712
Xenopus100494324484662
Zebrafish337089, 406431ENSDARG00000042027, ENSDARG00000033971ZDB-GENE-030131-9033, ZDB-GENE-020905-5ZFIN:ZDB-GENE-030131-9033, ZFIN:ZDB-GENE-020905-5
Gene Ontology
Molecular Functionsequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Processmulticellular organismal development
Cellular Componentnucleus
Links to other databases
Entrez Gene373941
Ensembl Gene
KEGGgga:373941

Entry 1

GEISHA IdChEST410i17Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GCGGCTCGAGGAAGCCAGAGTTCAGGTGTGGTTCCAGAACCGGAGGGCCAAGTTTCGCCGGAATGAGAGGGCCATGCTG
GCCAGCAAGAATGCCTCTCTGCTCAAATCCTACTCAGGGGATGTGACCGCCGTGGAGCAGCCCATAGTACCTCGCCCAG
CTCCAAGACCCACCGACTATCTCTCCTGGGGTACCGCCTCGCCTTACAGGTTTATTGCTTCTGCTCAATATACTACGAG
CTTCTTCAGTTAAGGACAGTCTCACCCTTGTTGTTTTCCATTTTTGTATGGGACTGCAAAAAGAAACCTTCGCTGATCT
CAGCCTGCGGCCGCCTCCCACCCAACACCGCGCTGAGGCTCAAAGCTTGCTCCCCCACCCCAGCTCACCCTAGAAGAAG
AAATTGTTTGGTCACCGCTTTCCGTTGTATCCACCTGACCTTCCGTCCCCTCCCACGTCCCTTGTGCCACAGAGGCAGT
GCCGTTGATGTTGACTGCGAGAAGCCCATTGGGCGCGATGGGCTGGGAAGCATCCCTGCTGGGTCGCCTGGACCACGAC
GCAAGGAAGATCTCTGTGGGCTTCGCACACTTTGTCAGCGCCTGGAAAAGCCAGAGAAGAGAGAAAAGCCAATGTGTGT
TTGTGAGTGGGGGGGGGGAGGATGGANAA
CommentsNo specific expression at stage 5.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
Primitive Streak
caudal
7-12
stage 7
stage 8
stage 11
stage 11
stage 12
Anterior Intestinal Portal
Anterior/Second Heart Field
Blood Vessels
Extraembryonic Mesoderm
Head Mesenchyme
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
 
13-18
stage 13
stage 15
Extraembryonic
Head Mesenchyme
Lateral Plate Mesoderm
Paraxial Mesoderm
 
19-23
stage 21
stage 23
Head Mesenchyme
Lateral Plate Mesoderm
Leg Mesenchyme
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Spinal Ganglia and Nerves
Wing Mesenchyme
 

Entry 2

GEISHA IdChEST410i17.redoData SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GCGGCTCGAGGAAGCCAGAGTTCAGGTGTGGTTCCAGAACCGGAGGGCCAAGTTTCGCCGGAATGAGAGGGCCATGCTG
GCCAGCAAGAATGCCTCTCTGCTCAAATCCTACTCAGGGGATGTGACCGCCGTGGAGCAGCCCATAGTACCTCGCCCAG
CTCCAAGACCCACCGACTATCTCTCCTGGGGTACCGCCTCGCCTTACAGGTTTATTGCTTCTGCTCAATATACTACGAG
CTTCTTCAGTTAAGGACAGTCTCACCCTTGTTGTTTTCCATTTTTGTATGGGACTGCAAAAAGAAACCTTCGCTGATCT
CAGCCTGCGGCCGCCTCCCACCCAACACCGCGCTGAGGCTCAAAGCTTGCTCCCCCACCCCAGCTCACCCTAGAAGAAG
AAATTGTTTGGTCACCGCTTTCCGTTGTATCCACCTGACCTTCCGTCCCCTCCCACGTCCCTTGTGCCACAGAGGCAGT
GCCGTTGATGTTGACTGCGAGAAGCCCATTGGGCGCGATGGGCTGGGAAGCATCCCTGCTGGGTCGCCTGGACCACGAC
GCAAGGAAGATCTCTGTGGGCTTCGCACACTTTGTCAGCGCCTGGAAAAGCCAGAGAAGAGAGAAAAGCCAATGTGTGT
TTGTGAGTGGGGGGGGGGAGGATGGANAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 17
stage 18
Extraembryonic
Head Mesenchyme
Limb Buds
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Somatic Mesoderm
 
19-24
stage 22
stage 23
Ear/Otic Placode
Leg Mesenchyme
Pharyngeal Arches and Clefts
Somatic Mesoderm
Somites
Wing Mesenchyme
 
25
stage 25
stage 25
stage 25
Ear/Otic Placode
Eye
Face Mesenchyme
Leg Mesenchyme
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Somatic Mesoderm
Somites
Wing Mesenchyme
 

Entry 3

GEISHA IdPrx1.Holleville.2007Data SourcePublication
Reverse cDNA Template Probeshow
CGGCACGAGGAAAAGCCCCCGCTCGGCACCATGGCGTCCAGCTATGCCCACGCCATGGAGAGGCAGGCCCTGCTGCCAG
CCCGCCTCGACGGCCCCGCCGGCCTGGACAATTTACAAGCCAAGAAGAACTTTTCCGTGAGTCACCTGCTGGACCTGGA
GGAGGCGGGCGACATGGTGGCCGCGCAGGGGGACGAGGGCGGCGGCGAGCCCGGCCGGAGCTTGTTGGAGTCCCCCGGG
CTGACCAGCGGCAGCGACACCCCGCAGCAGGACAATGATCAGCTGAATTCAGAAGAGAAGAAGAAAAGGAAGCAGAGAA
GGAACAGGACTACCTTCAACAGCAGCCAGCTCCAGGCACTAGAGAGGGTCTTTGAGAGGACACACTACCCCGATGCCTT
TGTACGGGAAGACCTTGCACGCAGAGTCAACCTCACTGAAGCCAGAGTTCAGGTGTGGTTCCAGAACCGGAGGGCCAAG
TTTCGCCGGAATGAGAGGGCCATGCTGGCCAGCAAGAACGCCTCTCTGCTCAAATCCTACTCAGGGGATGTGACCGCCG
TGGAGCAGCCCATAGTACCTCGCCCAGCTCCAAGACCCACCGACTATCTCTCCTGGGGTACCGCCTCGCCTTACAGTGC
CATGGCCACCTACTCCACCACGTGTACCAACGCCAGCCCGGCGCAGGGCATGAATATGGCCAACAGTATTGCCAACCTG
AGACTGAAGGCAAAAGAATATAGTTTACAGAGGAATCAAGTGCCCACAGTCAATTAATGACTGGGGGCAGCTGCTTCGC
AGAAGGAGAAAATACGACAGCACCCGTCTGCTTCGCAACTTCTGTGCTGAAATTTTAAAAAAATATATTAAAAATATTA
AAAAAAAGAAAAAAAAAAAAAAAAAA
CitationHolleville N, Matéos S, Bontoux M, Bollerot K, Monsoro-Burq AH. Dlx5 drives Runx2 expression and osteogenic differentiation in developing cranial suture mesenchyme. Dev Biol. 2007 Apr 15;304(2):860-74.
CopyrightReprinted with permission from Elsevier. Copyright © 2007 Elsevier B.V. All rights reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_001007821.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-38
stage 38
stage 38
Face Mesenchyme
Head Mesenchyme
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.1546

Mouse

EmageMGI:97712
EurexpressMGI:97712
MGI GXDMGI:97712

Frog

Xenbase484662

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-030131-9033, ZDB-GENE-020905-5
Home | Contact
     
© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona