GEISHA - A Chicken Embryo Gene Expression Database
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ALX4
ALX homeobox 4

The human orthologue of this gene is associated
with the following human diseases:
Gene
Official SymbolALX4
Official Full NameALX homeobox 4
CGNC ID48987
also known ashomeobox protein aristaless-like 4|aristaless-like homeobox 4, ALX4
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204162
PolypeptideNP_989493
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.934
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human60529ENSG00000052850MIM:613451MIM:605420
Mouse11695ENSMUSG00000040310All phenotypic alleles (5):Spontaneous(1) Chemically induced(3) Targeted, knock-out(1) MGI:108359
Xenopus100493396853002
Zebrafish100006399, 497424ZDB-GENE-070712-3, ZDB-GENE-050208-140ZFIN:ZDB-GENE-070712-3, ZFIN:ZDB-GENE-050208-140
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene373976
Ensembl Gene
KEGGgga:373976

Entry 1

GEISHA IdAlx4.Bothe.2006Data SourcePublication
Complete cDNA Template Probeshow
ATGAATGCTGATACTTGTGTTTCTTATTGTGATCCGGCTGCCATGGATTCCTACTACAACGCAGCCTCCCAGGGCGCAG
ACGGCTCCTCGCCTTTTAGGGCATTTCAAGCGAGTGACAAGTTCGGCCCCGCTTTCCTGGCCGCCAAAGGACAGAGCTT
CGGTGACAGCGGCGCGAAGTGCCGGAGCCGCTACAGCCCGCAGGAATGCCCGTCCCTGGACGGCAGCGGGCAGGCGCCG
GGCCCCGCCGCGCCCCCGCCCGCCTTTAGCAAATACCCGCAGCCCCAGCAGCAGCCGCCGCACCTCTACATGCAGCGCG
GCCCCTGCAAGACCCCCCCGGAGAGCAACCTCAAGCTGCAGGAGAGCGGCGGCCACAACGGAGCCCTGCAGGTCTCCTG
TTACGGTAAGGAGAGCAGTTTGGGAGAGGCTGACTTGCAGCCCAACGCCGACCCCTCGGGCATGGACAGCAGCTACCTC
AGCGTGAAGGAGGCTGGAGTGAAAGTCCCTCAGGACAGGGCCAGCACGGACCTCCCCAGCCCCATGGACAAGGCGGACT
CGGAGAGCAACAAGGGCAAAAAACGGAGGAACCGCACCACCTTCACCAGCTACCAGCTGGAGGAGCTGGAGAAGGTCTT
CCAGAAGACCCACTACCCAGATGTCTATGCCAGGGAGCAGCTAGCCATGAGGACAGACCTCACCGAGGCCCGAGTACAG
GTCTGGTTCCAGAATCGACGAGCCAAATGGCGCAAGCGGGAGCGGTTTGGCCAGATGCAGCAGGTCCGGACCCACTTCT
CCACTGCCTATGAGTTGCCTCTGCTCACTCGTGCTGAGAACTATGCCCAAATCCAGAACCCCTCTTGGATTGGCAACAA
TGGAGCTGCCTCCCCTGTGCCTGCTTGTGTTGTCCCCTGCGAGCCGGTGCCCTCCTGCATGTCCCCCCACGCGCATCCC
CACGCGGCTGGCGGTGTCTCCGACTTCCTCGGTGTCTCTAGCACTGGCGGCCACGTGGGCCAGACTCACGTGGGTGGCC
TCTTTGGTACGGCCGGCATTGGCCCCAGCCTCAACGGCTACGAGCTGAACAGCGAGCCGGACCGCAAGAGCTCCAGCAT
CGCGGCCCTGCGGATGAAGGCGAAGGAGCACAGCGCCGCGATCTCCTGGGCAACATGA
CitationBothe I, Dietrich S. The molecular setup of the avian head mesoderm and its implication for craniofacial myogenesis. Dev Dyn. 2006 Oct;235(10):2845-60.
CopyrightCopyright © 2006 Wiley-Liss, Inc.
CommentsInsufficient information provided to verify exact probe sequence. Sequence obtained from NCBI (NM_204162).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-10
stage 10
stage 10
Head Mesenchyme
Rhombomeres
Somites
 

Entry 2

GEISHA IdAlx4.Ahmed.2006Data SourcePublication
Complete cDNA Template Probeshow
ATGAATGCTGATACTTGTGTTTCTTATTGTGATCCGGCTGCCATGGATTCCTACTACAACGCAGCCTCCCAGGGCGCAG
ACGGCTCCTCGCCTTTTAGGGCATTTCAAGCGAGTGACAAGTTCGGCCCCGCTTTCCTGGCCGCCAAAGGACAGAGCTT
CGGTGACAGCGGCGCGAAGTGCCGGAGCCGCTACAGCCCGCAGGAATGCCCGTCCCTGGACGGCAGCGGGCAGGCGCCG
GGCCCCGCCGCGCCCCCGCCCGCCTTTAGCAAATACCCGCAGCCCCAGCAGCAGCCGCCGCACCTCTACATGCAGCGCG
GCCCCTGCAAGACCCCCCCGGAGAGCAACCTCAAGCTGCAGGAGAGCGGCGGCCACAACGGAGCCCTGCAGGTCTCCTG
TTACGGTAAGGAGAGCAGTTTGGGAGAGGCTGACTTGCAGCCCAACGCCGACCCCTCGGGCATGGACAGCAGCTACCTC
AGCGTGAAGGAGGCTGGAGTGAAAGTCCCTCAGGACAGGGCCAGCACGGACCTCCCCAGCCCCATGGACAAGGCGGACT
CGGAGAGCAACAAGGGCAAAAAACGGAGGAACCGCACCACCTTCACCAGCTACCAGCTGGAGGAGCTGGAGAAGGTCTT
CCAGAAGACCCACTACCCAGATGTCTATGCCAGGGAGCAGCTAGCCATGAGGACAGACCTCACCGAGGCCCGAGTACAG
GTCTGGTTCCAGAATCGACGAGCCAAATGGCGCAAGCGGGAGCGGTTTGGCCAGATGCAGCAGGTCCGGACCCACTTCT
CCACTGCCTATGAGTTGCCTCTGCTCACTCGTGCTGAGAACTATGCCCAAATCCAGAACCCCTCTTGGATTGGCAACAA
TGGAGCTGCCTCCCCTGTGCCTGCTTGTGTTGTCCCCTGCGAGCCGGTGCCCTCCTGCATGTCCCCCCACGCGCATCCC
CACGCGGCTGGCGGTGTCTCCGACTTCCTCGGTGTCTCTAGCACTGGCGGCCACGTGGGCCAGACTCACGTGGGTGGCC
TCTTTGGTACGGCCGGCATTGGCCCCAGCCTCAACGGCTACGAGCTGAACAGCGAGCCGGACCGCAAGAGCTCCAGCAT
CGCGGCCCTGCGGATGAAGGCGAAGGAGCACAGCGCCGCGATCTCCTGGGCAACATGA
CitationAhmed MU, Cheng L, Dietrich S. Establishment of the epaxial-hypaxial boundary in the avian myotome. Dev Dyn. 2006 Jul;235(7):1884-94.
CopyrightCopyright © 2006 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence was obtained from NCBI (NM_204162).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 20
stage 22
stage 24
Dermatome
Myotome
Dermamyotome
25
stage 25
Dermatome
Myotome
Dermamyotome

Entry 3

GEISHA IdALX4.Bothe.2007Data SourcePublication
Complete cDNA Template Probeshow
ATGAATGCTGATACTTGTGTTTCTTATTGTGATCCGGCTGCCATGGATTCCTACTACAACGCAGCCTCCCAGGGCGCAG
ACGGCTCCTCGCCTTTTAGGGCATTTCAAGCGAGTGACAAGTTCGGCCCCGCTTTCCTGGCCGCCAAAGGACAGAGCTT
CGGTGACAGCGGCGCGAAGTGCCGGAGCCGCTACAGCCCGCAGGAATGCCCGTCCCTGGACGGCAGCGGGCAGGCGCCG
GGCCCCGCCGCGCCCCCGCCCGCCTTTAGCAAATACCCGCAGCCCCAGCAGCAGCCGCCGCACCTCTACATGCAGCGCG
GCCCCTGCAAGACCCCCCCGGAGAGCAACCTCAAGCTGCAGGAGAGCGGCGGCCACAACGGAGCCCTGCAGGTCTCCTG
TTACGGTAAGGAGAGCAGTTTGGGAGAGGCTGACTTGCAGCCCAACGCCGACCCCTCGGGCATGGACAGCAGCTACCTC
AGCGTGAAGGAGGCTGGAGTGAAAGTCCCTCAGGACAGGGCCAGCACGGACCTCCCCAGCCCCATGGACAAGGCGGACT
CGGAGAGCAACAAGGGCAAAAAACGGAGGAACCGCACCACCTTCACCAGCTACCAGCTGGAGGAGCTGGAGAAGGTCTT
CCAGAAGACCCACTACCCAGATGTCTATGCCAGGGAGCAGCTAGCCATGAGGACAGACCTCACCGAGGCCCGAGTACAG
GTCTGGTTCCAGAATCGACGAGCCAAATGGCGCAAGCGGGAGCGGTTTGGCCAGATGCAGCAGGTCCGGACCCACTTCT
CCACTGCCTATGAGTTGCCTCTGCTCACTCGTGCTGAGAACTATGCCCAAATCCAGAACCCCTCTTGGATTGGCAACAA
TGGAGCTGCCTCCCCTGTGCCTGCTTGTGTTGTCCCCTGCGAGCCGGTGCCCTCCTGCATGTCCCCCCACGCGCATCCC
CACGCGGCTGGCGGTGTCTCCGACTTCCTCGGTGTCTCTAGCACTGGCGGCCACGTGGGCCAGACTCACGTGGGTGGCC
TCTTTGGTACGGCCGGCATTGGCCCCAGCCTCAACGGCTACGAGCTGAACAGCGAGCCGGACCGCAAGAGCTCCAGCAT
CGCGGCCCTGCGGATGAAGGCGAAGGAGCACAGCGCCGCGATCTCCTGGGCAACATGA
CitationBothe I, Ahmed MU, Winterbottom FL, von Scheven G, Dietrich S. Extrinsic versus intrinsic cues in avian paraxial mesoderm patterning and differentiation. Dev Dyn. 2007 Sep;236(9):2397-409.
CopyrightCopyright © 2007 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204162).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
stage 10
Head Mesenchyme
Rhombomeres
Dorsal Rhombomeres 4-7
19-24
stage 24
stage 24
Dermatome
Myotome
Somites
 

Entry 4

GEISHA IdAlx4.Cheng.2004Data SourcePublication
Complete cDNA Template Probeshow
ATGAATGCTGATACTTGTGTTTCTTATTGTGATCCGGCTGCCATGGATTCCTACTACAACGCAGCCTCCCAGGGCGCAG
ACGGCTCCTCGCCTTTTAGGGCATTTCAAGCGAGTGACAAGTTCGGCCCCGCTTTCCTGGCCGCCAAAGGACAGAGCTT
CGGTGACAGCGGCGCGAAGTGCCGGAGCCGCTACAGCCCGCAGGAATGCCCGTCCCTGGACGGCAGCGGGCAGGCGCCG
GGCCCCGCCGCGCCCCCGCCCGCCTTTAGCAAATACCCGCAGCCCCAGCAGCAGCCGCCGCACCTCTACATGCAGCGCG
GCCCCTGCAAGACCCCCCCGGAGAGCAACCTCAAGCTGCAGGAGAGCGGCGGCCACAACGGAGCCCTGCAGGTCTCCTG
TTACGGTAAGGAGAGCAGTTTGGGAGAGGCTGACTTGCAGCCCAACGCCGACCCCTCGGGCATGGACAGCAGCTACCTC
AGCGTGAAGGAGGCTGGAGTGAAAGTCCCTCAGGACAGGGCCAGCACGGACCTCCCCAGCCCCATGGACAAGGCGGACT
CGGAGAGCAACAAGGGCAAAAAACGGAGGAACCGCACCACCTTCACCAGCTACCAGCTGGAGGAGCTGGAGAAGGTCTT
CCAGAAGACCCACTACCCAGATGTCTATGCCAGGGAGCAGCTAGCCATGAGGACAGACCTCACCGAGGCCCGAGTACAG
GTCTGGTTCCAGAATCGACGAGCCAAATGGCGCAAGCGGGAGCGGTTTGGCCAGATGCAGCAGGTCCGGACCCACTTCT
CCACTGCCTATGAGTTGCCTCTGCTCACTCGTGCTGAGAACTATGCCCAAATCCAGAACCCCTCTTGGATTGGCAACAA
TGGAGCTGCCTCCCCTGTGCCTGCTTGTGTTGTCCCCTGCGAGCCGGTGCCCTCCTGCATGTCCCCCCACGCGCATCCC
CACGCGGCTGGCGGTGTCTCCGACTTCCTCGGTGTCTCTAGCACTGGCGGCCACGTGGGCCAGACTCACGTGGGTGGCC
TCTTTGGTACGGCCGGCATTGGCCCCAGCCTCAACGGCTACGAGCTGAACAGCGAGCCGGACCGCAAGAGCTCCAGCAT
CGCGGCCCTGCGGATGAAGGCGAAGGAGCACAGCGCCGCGATCTCCTGGGCAACATGA
CitationCheng L, Alvares LE, Ahmed MU, El-Hanfy AS, Dietrich S. The epaxial-hypaxial subdivision of the avian somite. Dev Biol. 2004 Oct 15;274(2):348-69.
CopyrightReprinted from Developmental Biology, Volume 274, Issue 2, Louise Cheng, Lúcia E. Alvares, Mohi U. Ahmend, Amira S. El-Hanfy, and Susanne Dietrich, The epaxial-hypaxial subdivision of the avian somite, Pages 348-369, Copyright 2004, with permission from Elsevier. Copyright © 2004 Elsevier B.V. All rights reserved.
CommentsAuthors indicate the probe is from Takahashi et al., 1998, who said: A plasmid containing chick Alx-4 was genbank Acc #AF092538 linearized with BamHI (no internal site).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 7
Dermomyotome
Hypaxial
19-20
stage 20
 Comparison of several genes.

Entry 5

GEISHA IdALX4.Bothe.2011Data SourcePublication
Complete cDNA Template Probeshow
ATGAATGCTGATACTTGTGTTTCTTATTGTGATCCGGCTGCCATGGATTCCTACTACAACGCAGCCTCCCAGGGCGCAG
ACGGCTCCTCGCCTTTTAGGGCATTTCAAGCGAGTGACAAGTTCGGCCCCGCTTTCCTGGCCGCCAAAGGACAGAGCTT
CGGTGACAGCGGCGCGAAGTGCCGGAGCCGCTACAGCCCGCAGGAATGCCCGTCCCTGGACGGCAGCGGGCAGGCGCCG
GGCCCCGCCGCGCCCCCGCCCGCCTTTAGCAAATACCCGCAGCCCCAGCAGCAGCCGCCGCACCTCTACATGCAGCGCG
GCCCCTGCAAGACCCCCCCGGAGAGCAACCTCAAGCTGCAGGAGAGCGGCGGCCACAACGGAGCCCTGCAGGTCTCCTG
TTACGGTAAGGAGAGCAGTTTGGGAGAGGCTGACTTGCAGCCCAACGCCGACCCCTCGGGCATGGACAGCAGCTACCTC
AGCGTGAAGGAGGCTGGAGTGAAAGTCCCTCAGGACAGGGCCAGCACGGACCTCCCCAGCCCCATGGACAAGGCGGACT
CGGAGAGCAACAAGGGCAAAAAACGGAGGAACCGCACCACCTTCACCAGCTACCAGCTGGAGGAGCTGGAGAAGGTCTT
CCAGAAGACCCACTACCCAGATGTCTATGCCAGGGAGCAGCTAGCCATGAGGACAGACCTCACCGAGGCCCGAGTACAG
GTCTGGTTCCAGAATCGACGAGCCAAATGGCGCAAGCGGGAGCGGTTTGGCCAGATGCAGCAGGTCCGGACCCACTTCT
CCACTGCCTATGAGTTGCCTCTGCTCACTCGTGCTGAGAACTATGCCCAAATCCAGAACCCCTCTTGGATTGGCAACAA
TGGAGCTGCCTCCCCTGTGCCTGCTTGTGTTGTCCCCTGCGAGCCGGTGCCCTCCTGCATGTCCCCCCACGCGCATCCC
CACGCGGCTGGCGGTGTCTCCGACTTCCTCGGTGTCTCTAGCACTGGCGGCCACGTGGGCCAGACTCACGTGGGTGGCC
TCTTTGGTACGGCCGGCATTGGCCCCAGCCTCAACGGCTACGAGCTGAACAGCGAGCCGGACCGCAAGAGCTCCAGCAT
CGCGGCCCTGCGGATGAAGGCGAAGGAGCACAGCGCCGCGATCTCCTGGGCAACATGA
CitationBothe I, Tenin G, Oseni A, Dietrich S., Dynamic control of head mesoderm patterning., Development. 2011 Jul;138(13):2807-21.
CopyrightPermission from the authors and the Company of Biologists Ltd. Copyright held by the authors.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204162).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-10
stage 10
stage 10
stage 10
stage 10
Head Mesenchyme
Neural Plate/Tube
 

Entry 6

GEISHA IdALX4.McGonnell.2011Data SourcePublication
Complete cDNA Template Probeshow
ATGAATGCTGATACTTGTGTTTCTTATTGTGATCCGGCTGCCATGGATTCCTACTACAACGCAGCCTCCCAGGGCGCAG
ACGGCTCCTCGCCTTTTAGGGCATTTCAAGCGAGTGACAAGTTCGGCCCCGCTTTCCTGGCCGCCAAAGGACAGAGCTT
CGGTGACAGCGGCGCGAAGTGCCGGAGCCGCTACAGCCCGCAGGAATGCCCGTCCCTGGACGGCAGCGGGCAGGCGCCG
GGCCCCGCCGCGCCCCCGCCCGCCTTTAGCAAATACCCGCAGCCCCAGCAGCAGCCGCCGCACCTCTACATGCAGCGCG
GCCCCTGCAAGACCCCCCCGGAGAGCAACCTCAAGCTGCAGGAGAGCGGCGGCCACAACGGAGCCCTGCAGGTCTCCTG
TTACGGTAAGGAGAGCAGTTTGGGAGAGGCTGACTTGCAGCCCAACGCCGACCCCTCGGGCATGGACAGCAGCTACCTC
AGCGTGAAGGAGGCTGGAGTGAAAGTCCCTCAGGACAGGGCCAGCACGGACCTCCCCAGCCCCATGGACAAGGCGGACT
CGGAGAGCAACAAGGGCAAAAAACGGAGGAACCGCACCACCTTCACCAGCTACCAGCTGGAGGAGCTGGAGAAGGTCTT
CCAGAAGACCCACTACCCAGATGTCTATGCCAGGGAGCAGCTAGCCATGAGGACAGACCTCACCGAGGCCCGAGTACAG
GTCTGGTTCCAGAATCGACGAGCCAAATGGCGCAAGCGGGAGCGGTTTGGCCAGATGCAGCAGGTCCGGACCCACTTCT
CCACTGCCTATGAGTTGCCTCTGCTCACTCGTGCTGAGAACTATGCCCAAATCCAGAACCCCTCTTGGATTGGCAACAA
TGGAGCTGCCTCCCCTGTGCCTGCTTGTGTTGTCCCCTGCGAGCCGGTGCCCTCCTGCATGTCCCCCCACGCGCATCCC
CACGCGGCTGGCGGTGTCTCCGACTTCCTCGGTGTCTCTAGCACTGGCGGCCACGTGGGCCAGACTCACGTGGGTGGCC
TCTTTGGTACGGCCGGCATTGGCCCCAGCCTCAACGGCTACGAGCTGAACAGCGAGCCGGACCGCAAGAGCTCCAGCAT
CGCGGCCCTGCGGATGAAGGCGAAGGAGCACAGCGCCGCGATCTCCTGGGCAACATGA
CitationMcGonnell IM, Graham A, Richardson J, Fish JL, Depew MJ, Dee CT, Holland PW, Takahashi T.. Evolution of the Alx homeobox gene family: parallel retention and independent loss of the vertebrate Alx3 gene. Evol Dev. 2011 July; 13(4): 343–351.
CopyrightCopyright © 2011 Wiley Periodicals, Inc.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-23
stage 23
stage 23
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.934

Mouse

EmageMGI:108359
EurexpressMGI:108359
MGI GXDMGI:108359

Frog

Xenbase853002

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-070712-3, ZDB-GENE-050208-140
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