GEISHA - A Chicken Embryo Gene Expression Database
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ARNT
aryl hydrocarbon receptor nuclear translocator

Gene
Official SymbolARNT
Official Full Namearyl hydrocarbon receptor nuclear translocator
CGNC ID49009
also known asaryl hydrocarbon receptor nuclear translocator, HIF-1B, Aryl hydrocarbon receptor nuclear translocator
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204200
PolypeptideNP_989531
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.8458
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly41084FBgn0264075
Human405ENSG00000143437MIM:126110MIM:126110
Mouse11863ENSMUSG00000015522All phenotypic alleles (9):Targeted, knock-out(3) Targeted, other(6) MGI:88071
Xenopus100144695, 399025855449
Zebrafish493634ZDB-GENE-060126-7ZFIN:ZDB-GENE-060126-7
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene374026
Ensembl GeneENSGALG00000000751
KEGGgga:374026

Entry 1

GEISHA Idpgm2n.pk007.l20Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
AGGAAGAGAGAGCCTGGCCGGGTACGACCACGCACAGGTTCCTGTGCAGCCCGTGAGTGCTGCTGGCCCGGAGCACAGC
AAACCTCTGGAGAAGGCAGAGAGCCTCTTTAACCAGGAGAGGGACCCGAGGTTTGGGGAGATCTACGGCAGCATCAATG
CAGACCAGAACAAAGCCATTCCTGCCAGCTCAGTGCCTGCCAACCCCACCCTCTTTCCACAGGGAAACGCTTTCACACC
ATCGCGGCCCGCTGAGAACTTCAGGAGCAGCAGCATGGTGCCTCCAGTGAACATCATCCAGCAGCAGCCGGCAGCAGCA
GGCCGGATCCTGGCGCAGATCTCACGCCACGCCAGCCCGGCTCAGGTCAGCGGGAGCAGTTGGGCTGCCGGGACCCGAC
CGGCGTTCGCAGCCCAGCAGGTGGCCTCCCAGGCAGTGAAGACTCGGCCTCCTTCGTTCAGCATGGGGACGTTCCAGGG
CACCCCGGCCTCCTTCAGCCCCATGGCAGCTCCAGGCTCCACAGCTTCCCCCAGCAGTGCCGCGTACCCAAACCTCTCT
GGCCGCAGTGCGGGCTTCACCACGGATGCAGCGCAGACCCCCACCCCGTTCCAACCCCGGGCAGCAGCTGAAGGAGTGG
GGATGTGGCCGCAGTGGCAAGGACAGCACCACAGCACGGCGGCCGGGGAGCAGCACGTGCAGCAGCCCAGCCAGCCTGA
GGCCTTCCCAGACATGCTGACCATGCTGGGAGACCAAGCCCCAACTACAACAACGAGGAGTTCCCCGAATTGGACATAT
TCCCTTCTTTTTCAGAGTAAACCCGAGATGGGGGGGGGGGAANCT
Commentsno specific expression detected for stages 4-23 (low level, widespread or ubiquitous)
no images

Entry 2

GEISHA IdARNT.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerGCTTGATTTTGATGATGATGGCG
Reverse cDNA Template PrimerAATTAACCCTCACTAAAGGGCTGGCAGGAATGGCTTTGcDNA Template Length1659
Forward cDNA Template Probeshow
CTGGTNGCATGGAGCTGCCGTAGATCTCCCCAAACCTCGGGGTCCCTCTCCTGGTTAAAGNAGGCTCTCTGCCTTCTCC
AGCAGGTTTGCTGTGCTCCGGGACCAGCAGCACTCACGGGCTGCACAGGAACCTGNGCNTGGTCGTACCCGGCNAGGCT
CTCTCTTCCTGGGACCACTTCCAACTCTGTCTGTTGAGGCTGCTGCTGCTGCCTTGAGGGCANCTGNGCTGTGNCCATC
TCCAGGGAAAGGCTGACACTCTGCNCCAGCTGGGGNCTCTNCATTGGGTTTGATAGGNCANGCNGAGAGTCCTGGCNTG
AGNTCTTGACGTTGGTGTTGGTACANATGATGTACTCAATTTCATCCNAGTAAGGGTTCTGGAAGGTAAAGGANCTGGT
TCTCATCCNGAGCNATTCCCGGTTTTTGNATCGGAANCGNAACATGACTGACANAACCTGGCCTTTTAACTTCACCANC
TGCTGAAAGCTGNCCCGCAAAANCTGCTGGTCCTCTGGGNGGAANAAATCCACAATGTCTTTCCCCANAAGTTCCTGTG
GCTGGTANCNAANAGTAACCACACAGCGGTGGTCTATGAAGGTGAAAATGCNTTCCNTGTTGTGCCGGGAGATGAANTC
TGTTGGCTGACAAACATTGCTCATGTCTGTACANTTGGGCNAGCTGGTGACCTGGANCCTGCCAATAGCCACGANGCAA
AACTTGCTGCCCTGGCCAGCATCCGGGTCATCATCAGGCAGTGAAACACCTGCANGGGGCCAGGNCTTGATGTAACCCG
TGNAGTGCACCACCANGTANTGAGGCTCTANATCCTTCNTTGCACCTAANNCGTTCCTGCANNGATTCCTCATGAAGCT
NAAACNATTTACATACACTGCATCAACCGANCTGTTGCCACACTTCATGCGGCAGATGAAGGATCTCCGTGAGCCCATG
CACATCCTCATGGACTGNTGCCCCTCCTTCTTCNNAGTTNCTGACTTCAAATCCAGGATGNNACNTTTANATGCATCTC
GGNGGGGNANAANTGCTCCNT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
Area Pellucida
Primitive Streak
 
7-12
stage 8
stage 10
stage 10
stage 10
Blood Islands
Blood Vessels
Extraembryonic Mesoderm
Forebrain
Headfold
Heart
Hindbrain
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Paraxial Mesoderm
Sinus Venosus
Somites
 
13-18
stage 13
stage 14
stage 14
stage 14
stage 17
stage 17
Amnion
Anterior Intestinal Portal
Dermomyotome
Forebrain
Heart
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Sclerotome
Somatic Mesoderm
Somites
Spinal Cord
Splanchnic Mesoderm
Widespread Expression
 
19-24
stage 20
stage 22
stage 24
Leg
Limb Buds
Pharyngeal Arches and Clefts
Widespread Expression
Wing
 
25
stage 25
Leg
Outflow Tract
Pharyngeal Arches and Clefts
Widespread Expression
Wing
 

Entry 3

GEISHA IdHIF-1b.Nanka.2006Data SourcePublication
Complete cDNA Template Probeshow
CCCCCCCCACCTCCCGGCCCTCCCCCGGCGGACGGTGCTGCGCTTTTTTCAGCTCTTTCTCCGTCTCCTTCAGGAGCGC
TTTCCTGGCCGGGCACAGCCGGCTGGGGGGGCCCGGGGGGGGCGGCGCGGCGGCTGAGCTGCAGCACGACGATGTCGGA
CGCCTCGGGCNACGCGCACGGCCACGGCCGCTCCTCGCTCAGCCGCGCCAACTGCCCGCGCGTGCGTCCGCACCGCGTC
CCACACCCGGCNCGGCACCGTCAGCCTCGTCTTCNCNCCCCCCCCCAGCGGCCGCCCCCCGCCCCGGCGGTGGTGAGGG
AAGGGGGGGGGGGGGCGGCAGCGGGACGGGCCGCGCTATGGCAGCCACCGCCGCCAACCCGGAGATGGCATCAGATGTC
TCCTCGCTGGGCGCAGCCGTCGGCTCAGGGAACCCCGGGGCTGGAGCTCAAACTGGAGGAGGCATCGTGCAGAGAGCAG
CCAAGAGGCGTCCTGGGCTTGATTTTGATGATGATGGCGAAGGGAACAGTAAATTCCTCAGGTGTGATGACGACCCGAT
GCCAAACGATAAGGAGCGATTTGCCAGGTCTGATGATGAGCAGAGTTCAGCGGATAAGGAGAGACTTGCCAGGGAGAAT
CACAGCGAGATCGAGCGTAGGCGGAGGAACAAAATGACTGCCTACATCACCGAGCTGTCCGACATGGTGCCCACCTGCA
GCGCCCTGGCACGCAAACCAGACAAGCTGACCATCTTACGCATGGCCGTGTCCCACATGAAGTCCCTGCGTGGCACAGG
CAACACCTCCACGGATGGCACCTACAAACCCTCCTTCCTCACCGACCAGGAGCTCAAACACCTGATCCTGGAGGCAGCT
GATGGCTTTCTGTTCATCGTGTCCTGTGAGACCGGCAGGGTGGTTTACGTCTCTGACTCCGTGACTCCCGTCCTCAACC
AGCCCCAGTCGGAGTGGTTCGGCAGCACGCTGTACGACCAGGTGCACCCAGATGATGTGGGCAAGCTGAGGGAGCAGCT
CTCCACGTCAGAGAATGCACTGACAGAAGGAACCAAACCCTGGTGCCTTTCTAACAAGGATCCTGCAGCCCCCCCTGAG
AGTGCATCTAAAGGTCGCATCCTGGATTTGAAGACAGGAACTGTGAAGAAGGAGGGGCAGCAGTCCATGAGGATGTGCA
TGGGCTCACGGAGATCCTTCATCTGCCGCATGAGGTGTGGCAACAGCTCGGTGGATGCAGTGTCTGTAAATCGTCTCAG
CTTCATGAGGAATCGCTGCAGGAACGGCTTAGGTGCAACGAAGGATGGAGAGCCTCACTACGTGGTGGTGCACTGCACG
GGTTACATCAAGGCCTGGCCCCCTGCAGGTGTTTCACTGCCTGATGATGACCCGGATGCTGGCCAGGGCAGCAAGTTTT
GCCTCGTGGCTATTGGCAGGCTCCAGGTCACCAGCTCGCCCAACTGTACAGACATGAGCAATGTTTGTCAGCCAACAGA
GTTCATCTCCCGGCACAACACGGAAGGCATTTTCACCTTCATAGACCACCGCTGTGTGGCTACTGTTGGCTACCAGCCA
CAGGAACTTCTGGGGAAAGACATTGTGGATTTCTGCCACCCAGAGGACCAGCAGCTTTTGCGGGACAGCTTTCAGCAGG
TGGTGAAGTTAAAAGGCCAGGTTCTGTCAGTCATGTTCCGATTCCGATCCAAAAACCGGGAATGGCTCTGGATGAGAAC
CAGCTCCTTTACCTTCCAGAACCCCTACTCGGATGAAATTGAGTACATCATCTGTACCAACACCAACGTCAAGAACTCA
AGCCAGGACTCTCGGCCTGCCCTATCAAACCCAATGCAGAGGCCCCAGCTGGGGCAGAGTGTCAGCCTTCCCCTGGAGA
TGGGCACAGCACAGCTGCCCTCAAGGCAGCAGCAGCAGCCACAACAGACAGAGTTGGAAGTGGTCCCAGGAAGAGAGAG
CCTGGCCGGGTACGACCACGCACAGGTTCCTGTGCAGCCCGTGAGTGCTGCTGGCCCGGAGCACAGCAAACCTCTGGAG
AAGGCAGAGAGCCTCTTTAACCAGGAGAGGGACCCGAGGTTTGGGGAGATCTACGGCAGCATCAATGCAGACCAGAACA
AAGCCATTCCTGCCAGCTCAGTGCCTGCCAACCCCACCCTCTTTCCACAGGGAAATGCTTTCACACCATCGCGGCCCGC
TGAGAACTTCAGGAGCAGCAGCATGGTGCCTCCAGTGAACATCATCCAGCAGCAGCCGGCAGCAGCAGGCCGGATCCTG
GCGCAGATCTCACGCCACGCCAGCCCGGCTCAGGTCAGCGGGAGCAGTTGGGCTGCCGGGACCCGACCGGCGTTCGCAG
CCCAGGTGGCCTCCCAGGCAGTGAAGACTCGGCCTCCTTCGTTCAGCATGGGGACGTTCCAGGGCACCCCGGCCTCCTT
CAGCCCCATGGCAGCTCCAGGCTCCACAGCTTCCCCCAGCAGTGCCGCGTACCCAAACCTCTCTGGCCGCAGTGCGGGC
TTCACCACGGATGCAGCGCAGACCCCCACCCCGTTCCAACCCCGGGCAGCAGCTGAAGGAGTGGGGATGTGGCCGCAGT
GGCAAGGACAGCACCACAGCACGGCGGCCGGGGAGCAGCACGTGCAGCAGCCCAGCCAGCCTGAGGCCTTCCCAGACAT
GCTGACCATGCTGGGAGACCAAGGCCCCAACTACAACAACGAGGAGTTCCCCGAATTGAACATATTCCCTTCTTTTTCA
GAGTAAAACCCGTCT
CitationNanka O, Valásek P, Dvoráková M, Grim M. Experimental hypoxia and embryonic angiogenesis. Dev Dyn. 2006 Mar;235(3):723-33.
CopyrightCopyright © 2006 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (AF348088).
no images
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.8458

Mouse

EmageMGI:88071
EurexpressMGI:88071
MGI GXDMGI:88071

Frog

Xenbase855449

Fruit Fly

BDGPFBgn0264075

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-060126-7
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