Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

ARNT
aryl hydrocarbon receptor nuclear translocator

Gene

Official Symbol	ARNT
Official Full Name	aryl hydrocarbon receptor nuclear translocator
CGNC ID	49009
also known as	aryl hydrocarbon receptor nuclear translocator, HIF-1B, Aryl hydrocarbon receptor nuclear translocator
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_204200
Polypeptide	NP_989531

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	41084			FBgn0264075
Human	405	ENSG00000143437	MIM:126110	MIM:126110
Mouse	11863	ENSMUSG00000015522	All phenotypic alleles (9):Targeted, knock-out(3) Targeted, other(6)	MGI:88071
Xenopus	100144695, 399025			855449
Zebrafish	493634		ZDB-GENE-060126-7	ZFIN:ZDB-GENE-060126-7

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	374026
Ensembl Gene	ENSGALG00000000751
KEGG	gga:374026

Entry 1

GEISHA Id	pgm2n.pk007.l20	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show AGGAAGAGAGAGCCTGGCCGGGTACGACCACGCACAGGTTCCTGTGCAGCCCGTGAGTGCTGCTGGCCCGGAGCACAGC AAACCTCTGGAGAAGGCAGAGAGCCTCTTTAACCAGGAGAGGGACCCGAGGTTTGGGGAGATCTACGGCAGCATCAATG CAGACCAGAACAAAGCCATTCCTGCCAGCTCAGTGCCTGCCAACCCCACCCTCTTTCCACAGGGAAACGCTTTCACACC ATCGCGGCCCGCTGAGAACTTCAGGAGCAGCAGCATGGTGCCTCCAGTGAACATCATCCAGCAGCAGCCGGCAGCAGCA GGCCGGATCCTGGCGCAGATCTCACGCCACGCCAGCCCGGCTCAGGTCAGCGGGAGCAGTTGGGCTGCCGGGACCCGAC CGGCGTTCGCAGCCCAGCAGGTGGCCTCCCAGGCAGTGAAGACTCGGCCTCCTTCGTTCAGCATGGGGACGTTCCAGGG CACCCCGGCCTCCTTCAGCCCCATGGCAGCTCCAGGCTCCACAGCTTCCCCCAGCAGTGCCGCGTACCCAAACCTCTCT GGCCGCAGTGCGGGCTTCACCACGGATGCAGCGCAGACCCCCACCCCGTTCCAACCCCGGGCAGCAGCTGAAGGAGTGG GGATGTGGCCGCAGTGGCAAGGACAGCACCACAGCACGGCGGCCGGGGAGCAGCACGTGCAGCAGCCCAGCCAGCCTGA GGCCTTCCCAGACATGCTGACCATGCTGGGAGACCAAGCCCCAACTACAACAACGAGGAGTTCCCCGAATTGGACATAT TCCCTTCTTTTTCAGAGTAAACCCGAGATGGGGGGGGGGGAANCT
Comments	no specific expression detected for stages 4-23 (low level, widespread or ubiquitous)

no images

Entry 2

GEISHA Id	ARNT.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	GCTTGATTTTGATGATGATGGCG
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGGCTGGCAGGAATGGCTTTG	cDNA Template Length	1659
Forward cDNA Template Probe	show CTGGTNGCATGGAGCTGCCGTAGATCTCCCCAAACCTCGGGGTCCCTCTCCTGGTTAAAGNAGGCTCTCTGCCTTCTCC AGCAGGTTTGCTGTGCTCCGGGACCAGCAGCACTCACGGGCTGCACAGGAACCTGNGCNTGGTCGTACCCGGCNAGGCT CTCTCTTCCTGGGACCACTTCCAACTCTGTCTGTTGAGGCTGCTGCTGCTGCCTTGAGGGCANCTGNGCTGTGNCCATC TCCAGGGAAAGGCTGACACTCTGCNCCAGCTGGGGNCTCTNCATTGGGTTTGATAGGNCANGCNGAGAGTCCTGGCNTG AGNTCTTGACGTTGGTGTTGGTACANATGATGTACTCAATTTCATCCNAGTAAGGGTTCTGGAAGGTAAAGGANCTGGT TCTCATCCNGAGCNATTCCCGGTTTTTGNATCGGAANCGNAACATGACTGACANAACCTGGCCTTTTAACTTCACCANC TGCTGAAAGCTGNCCCGCAAAANCTGCTGGTCCTCTGGGNGGAANAAATCCACAATGTCTTTCCCCANAAGTTCCTGTG GCTGGTANCNAANAGTAACCACACAGCGGTGGTCTATGAAGGTGAAAATGCNTTCCNTGTTGTGCCGGGAGATGAANTC TGTTGGCTGACAAACATTGCTCATGTCTGTACANTTGGGCNAGCTGGTGACCTGGANCCTGCCAATAGCCACGANGCAA AACTTGCTGCCCTGGCCAGCATCCGGGTCATCATCAGGCAGTGAAACACCTGCANGGGGCCAGGNCTTGATGTAACCCG TGNAGTGCACCACCANGTANTGAGGCTCTANATCCTTCNTTGCACCTAANNCGTTCCTGCANNGATTCCTCATGAAGCT NAAACNATTTACATACACTGCATCAACCGANCTGTTGCCACACTTCATGCGGCAGATGAAGGATCTCCGTGAGCCCATG CACATCCTCATGGACTGNTGCCCCTCCTTCTTCNNAGTTNCTGACTTCAAATCCAGGATGNNACNTTTANATGCATCTC GGNGGGGNANAANTGCTCCNT

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

Area Pellucida
Primitive Streak

7-12

stage 8

stage 10

Blood Islands
Blood Vessels
Extraembryonic Mesoderm
Forebrain
Headfold
Heart
Hindbrain
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Paraxial Mesoderm
Sinus Venosus
Somites

13-18

stage 13

stage 14

stage 17

Amnion
Anterior Intestinal Portal
Dermomyotome
Forebrain
Heart
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Sclerotome
Somatic Mesoderm
Somites
Spinal Cord
Splanchnic Mesoderm
Widespread Expression

19-24

stage 20

stage 22

stage 24

Leg
Limb Buds
Pharyngeal Arches and Clefts
Widespread Expression
Wing

stage 25

Leg
Outflow Tract
Pharyngeal Arches and Clefts
Widespread Expression
Wing

Entry 3

GEISHA Id	HIF-1b.Nanka.2006	Data Source	Publication
Complete cDNA Template Probe	show CCCCCCCCACCTCCCGGCCCTCCCCCGGCGGACGGTGCTGCGCTTTTTTCAGCTCTTTCTCCGTCTCCTTCAGGAGCGC TTTCCTGGCCGGGCACAGCCGGCTGGGGGGGCCCGGGGGGGGCGGCGCGGCGGCTGAGCTGCAGCACGACGATGTCGGA CGCCTCGGGCNACGCGCACGGCCACGGCCGCTCCTCGCTCAGCCGCGCCAACTGCCCGCGCGTGCGTCCGCACCGCGTC CCACACCCGGCNCGGCACCGTCAGCCTCGTCTTCNCNCCCCCCCCCAGCGGCCGCCCCCCGCCCCGGCGGTGGTGAGGG AAGGGGGGGGGGGGGCGGCAGCGGGACGGGCCGCGCTATGGCAGCCACCGCCGCCAACCCGGAGATGGCATCAGATGTC TCCTCGCTGGGCGCAGCCGTCGGCTCAGGGAACCCCGGGGCTGGAGCTCAAACTGGAGGAGGCATCGTGCAGAGAGCAG CCAAGAGGCGTCCTGGGCTTGATTTTGATGATGATGGCGAAGGGAACAGTAAATTCCTCAGGTGTGATGACGACCCGAT GCCAAACGATAAGGAGCGATTTGCCAGGTCTGATGATGAGCAGAGTTCAGCGGATAAGGAGAGACTTGCCAGGGAGAAT CACAGCGAGATCGAGCGTAGGCGGAGGAACAAAATGACTGCCTACATCACCGAGCTGTCCGACATGGTGCCCACCTGCA GCGCCCTGGCACGCAAACCAGACAAGCTGACCATCTTACGCATGGCCGTGTCCCACATGAAGTCCCTGCGTGGCACAGG CAACACCTCCACGGATGGCACCTACAAACCCTCCTTCCTCACCGACCAGGAGCTCAAACACCTGATCCTGGAGGCAGCT GATGGCTTTCTGTTCATCGTGTCCTGTGAGACCGGCAGGGTGGTTTACGTCTCTGACTCCGTGACTCCCGTCCTCAACC AGCCCCAGTCGGAGTGGTTCGGCAGCACGCTGTACGACCAGGTGCACCCAGATGATGTGGGCAAGCTGAGGGAGCAGCT CTCCACGTCAGAGAATGCACTGACAGAAGGAACCAAACCCTGGTGCCTTTCTAACAAGGATCCTGCAGCCCCCCCTGAG AGTGCATCTAAAGGTCGCATCCTGGATTTGAAGACAGGAACTGTGAAGAAGGAGGGGCAGCAGTCCATGAGGATGTGCA TGGGCTCACGGAGATCCTTCATCTGCCGCATGAGGTGTGGCAACAGCTCGGTGGATGCAGTGTCTGTAAATCGTCTCAG CTTCATGAGGAATCGCTGCAGGAACGGCTTAGGTGCAACGAAGGATGGAGAGCCTCACTACGTGGTGGTGCACTGCACG GGTTACATCAAGGCCTGGCCCCCTGCAGGTGTTTCACTGCCTGATGATGACCCGGATGCTGGCCAGGGCAGCAAGTTTT GCCTCGTGGCTATTGGCAGGCTCCAGGTCACCAGCTCGCCCAACTGTACAGACATGAGCAATGTTTGTCAGCCAACAGA GTTCATCTCCCGGCACAACACGGAAGGCATTTTCACCTTCATAGACCACCGCTGTGTGGCTACTGTTGGCTACCAGCCA CAGGAACTTCTGGGGAAAGACATTGTGGATTTCTGCCACCCAGAGGACCAGCAGCTTTTGCGGGACAGCTTTCAGCAGG TGGTGAAGTTAAAAGGCCAGGTTCTGTCAGTCATGTTCCGATTCCGATCCAAAAACCGGGAATGGCTCTGGATGAGAAC CAGCTCCTTTACCTTCCAGAACCCCTACTCGGATGAAATTGAGTACATCATCTGTACCAACACCAACGTCAAGAACTCA AGCCAGGACTCTCGGCCTGCCCTATCAAACCCAATGCAGAGGCCCCAGCTGGGGCAGAGTGTCAGCCTTCCCCTGGAGA TGGGCACAGCACAGCTGCCCTCAAGGCAGCAGCAGCAGCCACAACAGACAGAGTTGGAAGTGGTCCCAGGAAGAGAGAG CCTGGCCGGGTACGACCACGCACAGGTTCCTGTGCAGCCCGTGAGTGCTGCTGGCCCGGAGCACAGCAAACCTCTGGAG AAGGCAGAGAGCCTCTTTAACCAGGAGAGGGACCCGAGGTTTGGGGAGATCTACGGCAGCATCAATGCAGACCAGAACA AAGCCATTCCTGCCAGCTCAGTGCCTGCCAACCCCACCCTCTTTCCACAGGGAAATGCTTTCACACCATCGCGGCCCGC TGAGAACTTCAGGAGCAGCAGCATGGTGCCTCCAGTGAACATCATCCAGCAGCAGCCGGCAGCAGCAGGCCGGATCCTG GCGCAGATCTCACGCCACGCCAGCCCGGCTCAGGTCAGCGGGAGCAGTTGGGCTGCCGGGACCCGACCGGCGTTCGCAG CCCAGGTGGCCTCCCAGGCAGTGAAGACTCGGCCTCCTTCGTTCAGCATGGGGACGTTCCAGGGCACCCCGGCCTCCTT CAGCCCCATGGCAGCTCCAGGCTCCACAGCTTCCCCCAGCAGTGCCGCGTACCCAAACCTCTCTGGCCGCAGTGCGGGC TTCACCACGGATGCAGCGCAGACCCCCACCCCGTTCCAACCCCGGGCAGCAGCTGAAGGAGTGGGGATGTGGCCGCAGT GGCAAGGACAGCACCACAGCACGGCGGCCGGGGAGCAGCACGTGCAGCAGCCCAGCCAGCCTGAGGCCTTCCCAGACAT GCTGACCATGCTGGGAGACCAAGGCCCCAACTACAACAACGAGGAGTTCCCCGAATTGAACATATTCCCTTCTTTTTCA GAGTAAAACCCGTCT
Citation	Nanka O, Valásek P, Dvoráková M, Grim M. Experimental hypoxia and embryonic angiogenesis. Dev Dyn. 2006 Mar;235(3):723-33.
Copyright	Copyright © 2006 Wiley-Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (AF348088).

no images