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HOXA1
homeobox A1| Gene | | Official Symbol | HOXA1 | | Official Full Name | homeobox A1 | | CGNC ID | 49021 | | also known as | HOXA2, homeobox protein Hox-A1|homeo box A1|homeobox A2 | | gene type | protein-coding |
| | Genomic Map | | | Sequence Information | | | Gene Expression | | | Orthology | | Entrez Gene | Ensembl Gene | Genetic Phenotypes | MOD | | Fruit Fly | | | | | | Human | | | | | | Mouse | | | | | | Xenopus | | | | | | Zebrafish | | | | |
| | Gene Ontology | | Molecular Function | | | Biological Process | | | Cellular Component | |
| | Links to other databases | |
Entry 1| GEISHA Id | NKX2.3.Smith.2000 | Data Source | Publication | | Complete cDNA Template Probe | show GTTGCTGTCGGCGCCGGGCTAATGGAGGCAACTTAGACAGGAGCAGGCGCGCCCCTCGTCTCTCGGCGCTGCCGCTCCC
CCCGCACCGGGCGCGGCGCTCCCCGCCGAGCGCAGCCCGAGCGCCGCCGCGCCCCGGGACTCCCCGGCCTCGCGCTGCC
CCGATGATGTTACCGAGCCCCGTCACCTCCACCCCTTCCTCTGTCAAAGACATCCTCAACCTGGAGCAGCAGCAGCAGG
ACCCGCACTATGGGGCCCACGTCCCGCACCACCTGGAGCACCACTTTCACCCCGCCGCCTGCCTGCTCGCCGCGACGGC
GCCCCGGTTCTCCGACGGCGAGGAGGAAGAGGAGGAGGAGAAGCTGTCCTACCTGAGCTCCGTGGAACGCCCGGCGGCC
AGGCCGACGCGCGGCTCTGCCGACAGCTACGTGCATGCCGTGCTGCGCGGCTCCTGCGAGGCTCCCGGCCCGGGAGAGG
AGCTGGACCCCACGGCTCGCGACCCGAAGAGCTGCGCCCTGAAGAAACCGCTGGACGCCGCGGAGAAGCCGGAGGAGGC
GGAGAGGCCGAAGCAGCGGAGTCGGAGGAAGCCGCGCGTCCTCTTCTCGCAGGCGCAGGTCTTCGAGCTGGAGCGGCGG
TTCAAGCAGCAGCGTTACCTGTCGGCTCCCGAGCGGGAGCACCTGGCCAGCAGCCTGAAGCTCACCTCCACGCAGGTGA
AGATCTGGTTCCAGAACCGGCGCTACAAGTGCAAGCGGCAGCGGCAGGACAAGTCGCTGGAGCTGGGCGCCCCGCGGCC
CCGCGCGCCGCGCAGAGTGGCCGTGCCCGTGCTGGTCCGCGACGGCAAGCCGTGCCTGGGCGGCTCGCAGGGCTACAGC
TCGGTGTACAACGGGCCCTACTCCTACAACAGCTTCCTTACGGCTAGCCAACGCCGCCTCCTACAACCCCGGCTACGGC
TGCACCTACCCGGCGGGCAGCGGCGGGGCCTCGGTGCAAGCCGCCTGCAGCCCGGCGGCGGCCGCCGGCCCCTTCGTGA
ACGTGGGCGGCCTGGGGGGCTTCGGCGGCGGCGGGCAGGCGCTGCACCAGGCGGCGGCGGGGCCCTCCTGCAGCCAGGG
CGACTCGAGGGCATTCGGGCCTGGTAGCCCGCACGCACTTAGGGCCGGGAGCGGACCGGCACGACGGCCCCGCGGCCCC
GCAGCGCCCTTACGCCCCGCGGACTGAAGGCGGAGGGGCGGTGCGGCAGGACCCCGGCTCTCTCCCAGGGCCGCGGGGC
GGAGCGGAGCGCGGAACGGAAGGGAACGGGACTGGACGGGACAGGACGGGCCGAGCCCGCGGCGGAGGCCGCCGCCCCG
AGGTGCCGCCGCGACGGCGGCGGAGCTGACCGCGCCGACGGAGCAGCTCGTTGTAAGAAGCCGACGGGGACCCGGGGTC
CCGCGCCCTGCTCTCTATCTACGCTGTATCGGTTTCTCTGGGCTCCAACTGCGCGGAGTCAGTCAATAAACCAGGTGCC
ATATCCAAAAAAAAAA | | Citation | Smith DM, Grasty RC, Theodosiou NA, Tabin CJ, Nascone-Yoder NM. Evolutionary relationships between the amphibian, avian, and mammalian stomachs. Evol Dev. 2000 Nov-Dec;2(6):348-59. | | Copyright | Copyright © 2000-2011 by John Wiley & Sons, Inc., or related companies. All rights reserved. |
| Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | | 19-24 |
 | | stage 24 |
 | | stage 24 |
| Foregut
Midgut
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Entry 2| GEISHA Id | HOXA1.Barak.2012 | Data Source | Publication | | Complete cDNA Template Probe | show ATGAGCTCCTTCCTCGAGTACCCCGTCCTCGGCGGCGAGGCGGGGGCCTGCGCCGCCCGCTCCTACCACCCCGAGCACG
GGATTACAACTTTTCAGCCCTGCGCCGTCAGCGCCGGCAGCTGCAGCGGGGAGGACCGCTTCCTCGTGGGCCGCGGGGT
GTCCCTCAGCCCCCACCGGCACCACCACCCCCCGGCCCAGCCCGCCGCCTACCAGCACCACGGCGGCCTGGGGGTGTCC
TACGCGCACCCCGGCTGCCCCCCGACGTACGGCGCGCAGGGCTTCGGCGCCGCCTACGGCCCCTACGCTCTGGGGCAGG
ACGCGGAGCTGGGCGGCGGCTTCCCCCCCTGCGCGCCCGCCGTCTACTCGGGCAGCCTCTCCTCCGCCGCAGCGCAGCA
CCCGCACCAGGGCTACGCGGGGGGGCCCGCGCAGTACGTGCCCTCCCCGTACGGGCAGGAGCAGCAGAGCCTGCCCCTG
GGCACCTACAACCATGCCCTGTCTCCCCTCCACGCCGGCCACCAGGACAACTCCCGCTCCCCCTCCGCCGACACCTCGC
CGCCGGCGCAGACCTTCGACTGGATGAAAGTTAAAAGGAACCCCCCTAAAACAGGCAAGGCCGGCGAGTACGGCTTCGT
GGGGCAGCCCAACACCGTCCGGACCAACTTCACCACCAAGCAGCTCACCGAGCTGGAGAAGGAGTTCCACTTCAACAAG
TACCTGACCCGGGCCAGGCGGGTGGAAATCGCCGCCTCCCTCCAGCTCAACGAGACGCAGGTGAAGATCTGGTTCCAGA
ACCGGCGGATGAAGCAGAAGAAGAGGGAGAAAGAGGGGCTGCTGCCCATCTCCCCCGCCACCCCCACGGGCTGCGAGGA
GAAGGCGGACGACCCGTCGGAGAAGTGCTGCCCGTCGCCCTGCAGCGCCTCTCCCGCATCCTGCGCCTCGGACCCGGGA
CCCGCCGCCAACTGAGCTCCCCCGAGCCGCGGTGCGCTCCGTCGGTCCGTCCCGTCGGTCGGGCCCGGGGGCGCCGGCC
CGGCCGCTCCCGGCCCCTGCCGCCAAGAGGTTTTCTTTCGGTCCCCCCCTCCTCACCTCCTTGCCGGAGGAGTCGCGTT
GGCACGCGCGTGGGTTCTCCCTCCTCCCCGCAAGGACGTTCCTCTGAGTTTCCCTGGGTGACAGACAGGTCACGGAGGG
TACATAACCTCACGAAGAGATGCACTATGGCAAGTGTTTACACGACTTCTAGGACTTTCATCCTTTAATTTAATGTATA
CTTTGTTCGTGTCTATGAGTTCGTTGCTTGTAAATACTTTGTCCGAGAGATTTATCTTTTTACAGATTTT | | Citation | Barak H, Preger-Ben Noon E, Reshef R. Comparative spatiotemporal analysis of Hox gene expression in early stages of intermediate mesoderm formation. Dev Dyn. 2012 Oct;241(10):1637-49. | | Copyright | Copyright © 2012 Wiley Periodicals, Inc. | | Comments | As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # XM_003640697.1). |
Entry 3| GEISHA Id | HOXA1.Anderson.2021 | Data Source | Direct Submission | | Complete cDNA Template Probe | show GACTTCTAGGACTTTCATCCTTTAATTTAATGTATACTTGTTCGTGTCTATGAGTTCGTTGCTTGTAAATACTTGTCCG
AGAGATTTATCTTTTTACAGATTTTTTCTAGAGATGACGTTTAGATGATCAGGTGAAGCAGGGTGAGTGCATTCGCCAA
ACCGGACCCACTTTTCGATCGGTCAGGCTGACGGCAGCATCAAGCAGACGTGTTAAGCTCCAGCAGATACCTCAAAGCG
TAGCGCTATTTCCCAAAACGTGACAAACAAGGCTTCAATTGCACTAGGTTTGTAAACCTTACCCCGTGTGCTGTCCCCC
CCCTCCCCCATCAGCTGTGCTGGGCTGGCCGGACAGAGGGACACCGCGCCCCACGGACCTCACCCTCTCCCCGTTTCCG
TACTCCCCCTCCTTTAGCCTCGATGTCTTTTCGACCCGCTCGTGAATGTGTCGGATGGCCAAATGAATGTATAACTTCT
GTGGTTGGTGTCCGGGCCGCTGCATGCCGCCCCGTGTGTGCTGTACTCGGGACACGGAGCTCTGTTCGGGCGGGAGCCG
GGTCCCCGGAGTTGCGTACACTCACCAGGGCTCTGCGGTCCCAGCGCTGGACCC | | Comments | Images and probe sequence provided by Claire Anderson. The probe was synthesized from cDNA clone ChEST1010d14. Related paper: Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5. |
Entry 4| Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | | 7-12 |  | | stage 12 |
| Unlabeled
|
| | Data from NCBI Unigene EST Profile
Unigene ID: Gga.55802 |
MouseFrogFruit FlyZebra FinchZebrafish |
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