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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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CBX1
chromobox 1

Gene

Official Symbol	CBX1
Official Full Name	chromobox 1
CGNC ID	49096
also known as	chromobox protein homolog 1\|chromobox homolog 1 (HP1 beta homolog Drosophila )
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_204332
Polypeptide	NP_989663

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	31834			FBgn0030082
Human	10951	ENSG00000108468		MIM:604511
Mouse	12412	ENSMUSG00000018666	All phenotypic alleles (3):Targeted, other(2) Gene trapped(1)	MGI:105369
Xenopus	549904, 444708			1005973
Zebrafish	415180, 326746	ENSDARG00000054442, ENSDARG00000004189	ZDB-GENE-040625-68, ZDB-GENE-030131-4945	ZFIN:ZDB-GENE-040625-68, ZFIN:ZDB-GENE-030131-4945

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	374237
Ensembl Gene	ENSGALG00000000230
KEGG	gga:374237

Entry 1

GEISHA Id	CBX1	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	GCCAAGGAAGCCAACATCAAG
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGCCCAGACCGATACACCAGTAATAGC	cDNA Template Length	670
Complete cDNA Template Probe	show GCCAAGGAAGCCAACATCAAGTGCCCCCAGGTGGTCATCTCGTTCTATGAGGAGAGGTTGACATGGCATTCCTACCCCT CAGAGGACGATGACAAGAAAGAGGACAAGAACTAAACCCTGGCACCCGCCCTGGCCAGCCTTTGTATAAAGATCTGAAC TGTGGGTTTGAGCAAGAGGGGGAGAACGCAGCTCTGCTCAGTCGGGAGCGTAGAGATGGCTGGAGAAGATGCCCTTTGA AGAGACCAGTATGGTTTCTGTGCCCTGCAGCTGCTCCGCTGCTTTATGCAGCTTCATGCTGTGTACAGATTCAAACCAG CCCTGCTCACTGGGGGGGAGGGAAGGGTGGGGGGTCCGGGGTGGGGGTGGGGGGGGGCGCTGTGGGATTTCCAGGCTGT CCATTTGGCAGCTTGTGGGAGAGGAAGCAAAGCCCCTTCCATGAAGGACTGTCACTGGTGATGGGTGGGCTGGGGAAAA GGAGTGCAGATGGATACTGCTCATTCTTCAAAGACCATCTCAGCAACCCACAGCCTTCTTCCCAATAGTGTTAACTCTG CATTTTTACAGCGTAGCATGTGTGTAGGTTTTTTGTTTTTTTTTTTTTCCTGTTGTTGGTTTTATTTTTGTTTTGTTTT GTTTTTATCTTTTGCTATTACTGGTGTATCGGTCTGGG

Stage

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Comments (click to highlight)

1-3

stage 3

Early Mesoderm
Epiblast
Primitive Streak

4-6

stage 4

stage 6

Area Opaca
Blood Islands
Early Mesoderm
Ectoderm
Epiblast
Extraembryonic Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Widespread Expression
extraembryonic ectoderm
extraembryonic mesoderm

7-12

stage 7

stage 8

stage 10

stage 12

Anterior Intestinal Portal
Area Opaca
Blood Islands
Ectoderm
Endoderm
Extraembryonic Blood Vessels
Forebrain
Foregut
Head Mesenchyme
Heart
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Pharynx
Primitive Streak
Somites
Widespread Expression
extraembryonic ectoderm
extraembryonic endoderm
extraembryonic mesoderm

13-18

stage 14

stage 16

Diencephalon
Ear/Otic Placode
Eye
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Midbrain
Neural Plate/Tube
Notochord
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Somites

19-24

stage 22

stage 23

Dermomyotome
Ear/Otic Placode
Ectoderm
Eye
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Liver
Lung
Mesonephros
Midbrain
Nasal Placode/Nerve
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Wing Ectoderm
Wing Mesenchyme

stage 25

Dermomyotome
Ear/Otic Placode
Eye
Forebrain
Foregut
Heart
Hindbrain
Leg Mesenchyme
Lung
Mesencephalon
Mesonephros
Nasal Placode/Nerve
Neural Crest
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Wing Mesenchyme

Entry 2

GEISHA Id	CBX1.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show TTCGACGGAGGCAGACGGAGCGCGCCAGGCCCGCGGTGCCGGCCCCTGCCCGCCCGCCGCCCGTAGGCCGCTTCCCTTC GAAACCGTTGGCGGGGCTGTGCAAGCAGCGTCGCCCGTAAGCTGAAAAACTGGCCAGCACAATGGGAAAAAAACAGAAC AAGAAGAAAGTGGAAGAGGTCTTAGAGGAAGAGGAGGAGGAGTATGTGGTGGAGAAGGTCCTGGATCGACGGGTGGTGA AGGGCAAAGTGGAATATCTGCTGAAATGGAAAGGCTTCTCCGATGAAGATAACACATGGGAGCCAGAGGAGAACCTCGA CTGCCCAGACCTCATTGCAGAGTTCCTTCAGTCTCAGAAAACTGCACATGAGAGTGAGAAGTCTGAGGGAAGCAAACGC AAAGCAGAATCTGACACAGAAGACAAAGGGGAGGAGAGCAAACCAAAGAAGAAGAAGGAGGAGTCGGAGAAACCACGAG GCTTTGCCCGGGGCTTTGAGCCAGAACGGATCATTGGTGCCACAGATTCCAGCGGGGAGCTCATGTTCCTGATGAAGTG GAAGAACTCTGATGAGGCCGACCTGGTCCCCGCCAAGGAAGCCAACATCAAGTGCCCCCAGGTGGTCATCTCGTTCTAT GAGGAGAGGTTGACATGGCATTCCTACCCCTCAGAGGACGATGACAAGAAAGAGGACAAGAACTAAACCCTGGCACCCG CCCTGGCCAGCCTTTGTATAAAGATCTGAACTGTGGGTTTGAGCAAGAGGGGGAGAACGCAGCTCTGCTCAGTCGGGAG CGTAGAGATGGCTGGAGAAGATGCCCTTTGAAGAGACCAGTATGGTTTCTGTGCCCTGCAGCTGCTCCGCTGCTTTATG CAGCTTCATGCTGTGTACAGATTCAAACCAGCCCTGCTCACTGGGGGGGAGGGAAGGGTGGGGGGTCCGGGGTGGGGGT GGGGGGGGGCGCTGTGGGATTTCCAGGCTGTCCATTTGGCAGCTTGTGGGAGAGGAAGCAAAGCCCCTTCCATGAAGGA CTGTCACTGGTGATGGGTGGGCTGGGGAAAAGGAGTGCAGATGGATACTGCTCATTCTTCAAAGACCATCTCAGCAACC CACAGCCTTCTTCCCAATAGTGTTAACTCTGCATTTTTACAGCGTAGCATGTGTGTAGGTTTTTTGTTTTTTTTTTTTT CCTGTTGTTGGTTTTATTTTTGTTTTGTTTTGTTTTTATCTTTTGCTATTACTGGTGTATCGGTCTGGGGGTGTGGGGG GAGGGATGTGGGGAAATCGGTCTCTTGTTTCACTTGGGGGGGGAGGGTTGGGGGGGGGGAGATGAGGTCTGGTGACGAT GTTCCAGATCATTTCCAGGTCTTTTTTAGAACCTGAATTCAGAAAAGGAAAAAAAAATAAGAGCCCAGTATTGATGACA GACTAAGGAGACAGGGACAGTGACATGACACTGAGACTGTGAATGTCCACAGCTTTGGAGCCGAGGTCCTCAAAACCCT CAGAGCAGTTTGTATGGGGGGAGGGAGGGTGAGGGGAGACTTGTGAAAATGCAGACTTGTGATTCGTATTGTCCTGAAG CAGAACTGCCAGTTACTGACACACGCATTGTATGTGGGAGGGTGGGGTGGGAATGCATCTTAACCCCTTAAAAGCCTTT CTACCTTTTTTTTTTCCCCATCACAAGGTGCTATTTGTCAAAATGGGGGGGGGGAGGACTTCTGATTACTCATTCCTTT TCCCACCTTAATTTGACTGTCCAGCCAGCAGCACTGGGAACCCTTCACATTTATCACATGGGAGAGAGAGGAAACCACG AGCAGCACAAAAAAGAAAAACCAACAAAAAAGCAAAGAATTAATTCCATATTCTCCCATAACAAGTGATTGTTTTTAGG AGGCCAGACATTGGTGCCAGAGCCAGATGAGTAACCCTGAACCTTCGGAGGGTTGTTTTTTTTTTTTAAATCCAATTTG TTACAAATAATGACTTATTTAATGTCTGGAGTCATGAGCCCCACCAGACTCCTGGCACCTCCTTGTAGGGTGGTATGTA TCTAGACTTGCATTGTACAAACCTTTTTTTAAAAGCATGTGTTTAGGTTTCTGTGAAAACGTTGTTTAAATGTAAAGTA CGTGTTTGGATTTTAACTTCATACCGAGCTCTGTCAGTTTTTTTGGTCTCAATAAAATTTTAGATTTATAA
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001396186 ).