Geisha

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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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LSP1
lymphocyte specific protein 1

Gene

Official Symbol	LSP1
Official Full Name	lymphocyte specific protein 1
CGNC ID	4964
also known as	LSP1P1, lymphocyte-specific protein 1\|lymphocyte-specific protein 1 pseudogene 1, lymphocyte-specific protein 1
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204342
Polypeptide	NP_989673
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.4491

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	4046	ENSG00000130592		MIM:153432
Mouse	16985	ENSMUSG00000018819	All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2)	MGI:96832
Xenopus	496868, 100158343			490854
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	374254
Ensembl Gene	ENSGALG00000006583
KEGG	gga:374254

Entry 1

GEISHA Id	F14	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GGGAGAAACGAAGAAGAAGAGACCCCTGAAAAACGCCCAAAGGCCCCAAGCCCCACCAGCCTGGATGAGGAGGAGCTGT GCTCAGACCACACTGCGGTGTGCTCCACCAAGATCACAGACAGAACTGAGTCTCTGAACCGTTCAATAAAGAAAAGTAA CAGCATAAAGAAGTCCCAGCCTCCTCTGCCTGTGTCCAAGATAGATGACAGACTGGAGCAATACACACAAGCCATTGAG ACATCCACAAAGGCTCCAAAGCCTGTCCGGCAGCCCTCTCTTGACCTTCCCACCACCAGCATGATGGTAGCCAGCACAA AAAGCCTATGGGAGACTGGAGAGGTTGCTGCCCAATCTGCAGTGAAGACCCCAGCCTGCAAGGATATTGTGGCTGGAGA CATCGTGAGTAAAAGAAGCCTTTGGGAACAGAAGGGTAGTCCCAAACCTGAGAGCAATATCAAGTCCACTCCTTCTGGC AAGAAGTACAAGTTTGTTGCGACGGGCCATGGCCAGTACAAGAGGGTATTGATAGATGATGCTGCAGA

Stage

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Location (click to highlight)

Comments (click to highlight)

7-8

stage 8

Neural Plate/Tube

Entry 2

GEISHA Id	LSP1.Bell.2004	Data Source	Publication
Forward cDNA Template Probe	show GGGAGAAACGAAGAAGAAGAGACCCCTGAAAAACGCCCAAAGGCCCCAAGCCCCACCAGCCTGGATGAGGAGGAGCTGT GCTCAGACCACACTGCGGTGTGCTCCACCAAGATCACAGACAGAACTGAGTCTCTGAACCGTTCAATAAAGAAAAGTAA CAGCATAAAGAAGTCCCAGCCTCCTCTGCCTGTGTCCAAGATAGATGACAGACTGGAGCAATACACACAAGCCATTGAG ACATCCACAAAGGCTCCAAAGCCTGTCCGGCAGCCCTCTCTTGACCTTCCCACCACCAGCATGATGGTAGCCAGCACAA AAAGCCTATGGGAGACTGGAGAGGTTGCTGCCCAATCTGCAGTGAAGACCCCAGCCTGCAAGGATATTGTGGCTGGAGA CATCGTGAGTAAAAGAAGCCTTTGGGAACAGAAGGGTAGTCCCAAACCTGAGAGCAATATCAAGTCCACTCCTTCTGGC AAGAAGTACAAGTTTGTTGCGACGGGCCATGGCCAGTACAAGAGGGTATTGATAGATGATGCTGCAGA
Citation	Bell GW, Yatskievych TA, Antin PB. GEISHA, a whole-mount in situ hybridization gene expression screen in chicken embryos. Dev Dyn. 2004 Mar;229(3):677-87.
Copyright	Copyright © 2004 Wiley-Liss, Inc.
Comments	The probe sequence below was obtained from the GEISHA database using information provided in the publication, Geisha F14.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-8

stage 8

Neural Plate/Tube

Entry 3

GEISHA Id	LSP1.Anderson.2022	Data Source	Direct Submission
Complete cDNA Template Probe	show CTTTTTCTTTTAATTAAATCTGGCTCTGCCATGGAGATGGGAGGCTGTGGCTCCCCTCCCTTTCTTCTTTTTCAAATGC TGAAAGAGAAGGGCCTGCTGTCCTGACCAGCTGGCAGGGCTTCTGCTGTGTGATGGAGAGCTTCTGGCTCTGGGTGGCT GGAGTGGGGGGAGCTCATGAGAACCCCAGTGGAGGAATTGGTGTTGGAAAGGAGAGTGATGGGCAGACTCTGTGCCACC CTCCTTGTGCCAGCTGTATGTGAAGATGTTGCACTGCAGAATCTGTTTCGAGGGACCTCCATCTCCATGTGCACATCAA ACAGTTTAATTTAGTCCTGTTTATTTACTTCCCATATCATCCTTTAATCACAACTAAGTAGCCATGCCATAATGCTCCT GCCACTTTTCCTTGTTGACAGTGGCAGCAGCTTTGCTTCAAAGAGCTGCTGCCTTTCCCTCTGCTGCCCATGGTGGGGG TGAGCACTCCTTCTCCAGGTAAGGAGATCCTCTTGAAGTGCTTTTTTTTCCTACCCCCTTCTCACAAAGGCTCTCAACA TAATTTTGCTTCTGCTTCAATTTACAATGTGTTCTGGATTCAATTTTTTTGTAAGCATTTAATAAAATTTGAGGAAGAT GTTGTAACCAAAAA
Comments	Images and probe sequence provided by Claire Anderson. Related paper: Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 12

Extraembryonic
Intermediate Mesoderm
Lateral Plate Mesoderm
Notochord
Proepicardium
Sclerotome
Somatic Mesoderm
Somites
Splanchnic Mesoderm
Yolk Sack or Stalk
extraembryonic endoderm

Entry 4

GEISHA Id	LSP1.Anderson.2019	Data Source	Publication
Complete cDNA Template Probe	show GGCTCTGCCATGGAGATGGGAGGCTGTGGCTCCCCTCCCTTTCTTCTTTTTCAAATGCTGAAAGAGAAGGGCCTGCTGT CCTGACCAGCTGGCAGGGCTTCTGCTGTGTGATGGAGAGCTTCTGGCTCTGGGTGGCTGGAGTGGGGGGAGCTCATGAG AACCCCAGTGGAGGAATTGGTGTTGGAAAGGAGAGTGATGGGCAGACTCTGTGCCACCCTCCTTGTGCCAGCTGTATGT GAAGATGTTGCACTGCAGAATCTGTTTCGAGGGACCTCCATCTCCATGTGCACATCAAACAGTTTAATTTAGTCCTGTT TATTTACTTCCCATATCATCCTTTAATCACAACTAAGTAGCCATGCCATAATGCTCCTGCCACTTTTCCTTGTTGACAG TGGCAGCAGCTTTGCTTCAAAGAGCTGCTGCCTTTCCCTCTGCTGCCCATGGTGGGGGTGAGCACTCCTTCTCCAGGTA AGGAGATCCTCTTGAAGTGCTTTTTTTTCCTACCCCCTTCTCACAAAGGCTCTCAACATAATTTTGCTTCTGCTTCAAT TTACAATGTGTTCTGGATTCAATTTTTTTGTAAGCATTTAATAAAATTTGAGG
Citation	Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
Copyright	Copyright © 2019 Elsevier Inc. All rights reserved.
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Anderson et al. 2019.