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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
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ASCL1
achaete-scute family bHLH transcription factor 1

Gene

Official Symbol	ASCL1
Official Full Name	achaete-scute family bHLH transcription factor 1
BirdBase ID	BB-GG728
CGNC ID	49152
also known as	CASH1, achaete-scute homolog 1\|achaete-scute complex homolog 1\|achaete-scute complex-like 1
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204412
Polypeptide	NP_989743
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.488

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	386573
Ensembl Gene
KEGG	gga:386573

Entry 1

GEISHA Id	ASCL1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	CCCCCGACCCGTTCCAGAG
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGCAAAAGGCAGCATACAAAACCAGAC	cDNA Template Length	496
Forward cDNA Template Probe	show CCCCCCCGGATTAACGAGGCCGCTCTTCGCGTTGGACAATAGCTGCATAAACGTGGTTCCCTCGGAACACGCGTTTTCA CAACGCTTATTAATACATTAACAAAGTTTCTATGAAGTAAGACACGTCGGTGCTAAAGTACAGCTGGAGGGAGTCCAAG GCCTCGACAAAAGCACGGACCGAGATGGCAGCGGGAAAGTAACGCCGACCGCACGTCTACACACCGAGAGGTAAAAGCA TCGTGTATTAAAAAACGTATCAAGATATACACATTTTAAACCATTTGTACAAAACCTCTATAAATCTCTCTCTCTCTTA TGTACAAAAATAGCTTAATATATGTCCCCAAACTGGTCAGGGAGGATACAAATAGATTTTCTTATAATAAAAAAATTCA CCAAAATAATAATTAAAAAAAAAAAATTGGAAGCTTTCTTTGGGGAAAAAAAAAAGGGGCGAAGGGGGGGGGACCCTGG ACCGGGTCGGGGGAAAAAAAAAAAAA
Comments	No specific expression detected at or before stage 9.

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 9

stage 11

Neural Crest
Unlabeled

Dorsal view.

13-18

stage 13

stage 17

stage 18

Ear/Otic Placode
Eye
Forebrain
Hindbrain
Midbrain
Nasal Placode/Nerve
Neural Crest
Neural Plate/Tube
Somites
Spinal Cord
Spinal Ganglia and Nerves

Dorsal view.
Ventral view.

19-24

stage 24

Eye
Forebrain
Hindbrain
Midbrain
Nasal Placode/Nerve
Somites
Spinal Cord
Spinal Ganglia and Nerves

Entry 2

GEISHA Id	Mash1.Gimeno.2007	Data Source	Publication
Complete cDNA Template Probe	show GAATTCGGCACGAGCCGTGCACACGTGAGCGTCACGAGCCTCCCCGACGTCGACGAAGTTCGGAGGGAGAAGGGAGGGG GGGCCCGAGCCGTCCCGTTCCCGGACGGTCGACGTCCTCCGTGGACGCTCTCCCCTCTCCGACTTCCGCGCGTGACGAG CGGAGCCGCCGCTCCTCTCTCTCCCCCCTCTATCTCTCCACCTCCGGCGGGGGGGCAACGGGGAGCGCCCCCGCCTCGC ACGACGCCCCCGCGCCCATGGCCAGCGGCAGCCCCGCCGGGATGGCCAGCGGGCAGCCGCCCTTCCTGCAGCCCGCCTG CTTCTTCGCCGCCGCCGTGGCCGCCGCCGCCGCCGCCGCTCCGCCGGGGCCGCCCCCGGGGGCGCCGCCGCCGCCGCTC CCGCAGCTGAGCCCGGCGGGCGGGCGGCCGTCTCCCGGCGGGAAGCCGTCCGCGGCGCGGGCCGCCAAGCGGCAGCGCT CGGCCTCGCCGGAGCTGATGCGCTGCAAGAGGCGGCTCAACTTCAGCGGCTTCGGCTACAGCCTCCCGCAGCAGCAGCC CGCCGCCGTAGCGCGGCGCAACGAGCGGGAGCGCAACCGAGTCAAGCTGGTGAACCTTGGGTTCGCCACGCTCCGCGAG CACGTCCCCAACGGCGCGGCTAACAAGAAGATGAGCAAAGTGGAGACGCTGCGCTCCGCCGTCGAGTACATCCGCGCCC TGCAGCAGCTGCTCGACGAGCACGACGCCGTCAGCGCCGCCTCCCAGGCCGGCGTGCTGTCGCCCACCATCTCGCCCGG TTACTCCCACGACATGAACTCCATGGCGGGCTCCCCCGTCTCCTCCTACTCCTCCGACGAGGGCTCCTACGACCCGCTC AGCCCCGAGGAGCAGGAGCTGCTCGACTTCACCAGCTGGTTCTGATCCGGCCCCGGCAGGACGCTCGCGAAAGGGGAGA TAAGCGCCTCTCCCGCAACCACGCTCGCGGAGCACGCCACCGCCGGCCCACTACCAACTGTTGCGTTTTCCTCTCCCCG CCGTCGGAGGGCGGTGCGGGCACGGCTCTCGGCGGGCGGCTGCGTCCCCGCGGGGCGGGCGGGGCGGCCACCCTCAGCC CGGAGGCCCGAACCCCGTTCTGTGCCCCGCGGTGGCCCCGAGGAGCCCTTTCCCTGCTGCCCGTCCCCTCCGTACGGCG TCCGCGCTCTCTGGACCACGTTTCCCGGTGTTTGTGGAGATGTCGAGATGAAGCTATGCTGTACTCAAAGAACCCCCCC CCCGACCCGTTCCAGAGTCGCCCTCCCTCCGACCCTTTTTTTTTTCACCATAGAATGCTTCCAATTTTTTTTTTTTTAA TTATTATTTTGGTGAATTTTTTTATTATAAGAAAATCTATTTGTATCCTCCCTGACCAGTTTGGGGACATATATTAAGC TATTTTTGTACATAAGAGAGAGAGAGATTTATAGAGGTTTTGTACAAATGGTTTAAAATGTGTATATCTTGATACGTTT TTTAATACACGATGCTTTTACCTCTCGGTGTGTAGACGTGCGGTCGGCGTTACTTTCCCGCTGCCATCTCGGTCCGTGC TTTTGTCGAGGCCTTGGACTCCCTCCAGCTGTACTTTAGCACCGACGTGTCTTACTTCATAGAAACTTTGTTAATGTAT TAATAACGTTGTGAAAACCGTGTTCCGAGGGAACCACGTTTATGCAGCTATTGTCCAAACGCAGAAGAGCGGCCGTCTG GTTTTGTATGCTGCCTTTTGGGGGGGAAAAAAAAAAAACCAACCAAGTGACAATGCTACAAATAAGGAACCAACCGGCC CCGCTGGCACTGCCTTTTTCGTATTGCTCTATGACAAGCTCACCAGGCCCTGTATAACCCTGTTTTATACAAACTAGTT TCGTAATAAAACTTTCTCGTGCCGAATT
Citation	Gimeno L, Martinez S. Expression of chick Fgf19 and mouse Fgf15 orthologs is regulated in the developing brain by Fgf8 and Shh. Dev Dyn. 2007 Aug;236(8):2285-97.
Copyright	Copyright © 2007 Wiley-Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204412).

Stage

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Location (click to highlight)

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19-20

stage 20

Diencephalon
Midbrain

pretectum, zona limitans intrathalamica

Entry 3

GEISHA Id	ASH1.Chesnutt.2004	Data Source	Publication
Complete cDNA Template Probe	show GAATTCGGCACGAGCCGTGCACACGTGAGCGTCACGAGCCTCCCCGACGTCGACGAAGTTCGGAGGGAGAAGGGAGGGG GGGCCCGAGCCGTCCCGTTCCCGGACGGTCGACGTCCTCCGTGGACGCTCTCCCCTCTCCGACTTCCGCGCGTGACGAG CGGAGCCGCCGCTCCTCTCTCTCCCCCCTCTATCTCTCCACCTCCGGCGGGGGGGCAACGGGGAGCGCCCCCGCCTCGC ACGACGCCCCCGCGCCCATGGCCAGCGGCAGCCCCGCCGGGATGGCCAGCGGGCAGCCGCCCTTCCTGCAGCCCGCCTG CTTCTTCGCCGCCGCCGTGGCCGCCGCCGCCGCCGCCGCTCCGCCGGGGCCGCCCCCGGGGGCGCCGCCGCCGCCGCTC CCGCAGCTGAGCCCGGCGGGCGGGCGGCCGTCTCCCGGCGGGAAGCCGTCCGCGGCGCGGGCCGCCAAGCGGCAGCGCT CGGCCTCGCCGGAGCTGATGCGCTGCAAGAGGCGGCTCAACTTCAGCGGCTTCGGCTACAGCCTCCCGCAGCAGCAGCC CGCCGCCGTAGCGCGGCGCAACGAGCGGGAGCGCAACCGAGTCAAGCTGGTGAACCTTGGGTTCGCCACGCTCCGCGAG CACGTCCCCAACGGCGCGGCTAACAAGAAGATGAGCAAAGTGGAGACGCTGCGCTCCGCCGTCGAGTACATCCGCGCCC TGCAGCAGCTGCTCGACGAGCACGACGCCGTCAGCGCCGCCTCCCAGGCCGGCGTGCTGTCGCCCACCATCTCGCCCGG TTACTCCCACGACATGAACTCCATGGCGGGCTCCCCCGTCTCCTCCTACTCCTCCGACGAGGGCTCCTACGACCCGCTC AGCCCCGAGGAGCAGGAGCTGCTCGACTTCACCAGCTGGTTCTGATCCGGCCCCGGCAGGACGCTCGCGAAAGGGGAGA TAAGCGCCTCTCCCGCAACCACGCTCGCGGAGCACGCCACCGCCGGCCCACTACCAACTGTTGCGTTTTCCTCTCCCCG CCGTCGGAGGGCGGTGCGGGCACGGCTCTCGGCGGGCGGCTGCGTCCCCGCGGGGCGGGCGGGGCGGCCACCCTCAGCC CGGAGGCCCGAACCCCGTTCTGTGCCCCGCGGTGGCCCCGAGGAGCCCTTTCCCTGCTGCCCGTCCCCTCCGTACGGCG TCCGCGCTCTCTGGACCACGTTTCCCGGTGTTTGTGGAGATGTCGAGATGAAGCTATGCTGTACTCAAAGAACCCCCCC CCCGACCCGTTCCAGAGTCGCCCTCCCTCCGACCCTTTTTTTTTTCACCATAGAATGCTTCCAATTTTTTTTTTTTTAA TTATTATTTTGGTGAATTTTTTTATTATAAGAAAATCTATTTGTATCCTCCCTGACCAGTTTGGGGACATATATTAAGC TATTTTTGTACATAAGAGAGAGAGAGATTTATAGAGGTTTTGTACAAATGGTTTAAAATGTGTATATCTTGATACGTTT TTTAATACACGATGCTTTTACCTCTCGGTGTGTAGACGTGCGGTCGGCGTTACTTTCCCGCTGCCATCTCGGTCCGTGC TTTTGTCGAGGCCTTGGACTCCCTCCAGCTGTACTTTAGCACCGACGTGTCTTACTTCATAGAAACTTTGTTAATGTAT TAATAACGTTGTGAAAACCGTGTTCCGAGGGAACCACGTTTATGCAGCTATTGTCCAAACGCAGAAGAGCGGCCGTCTG GTTTTGTATGCTGCCTTTTGGGGGGGAAAAAAAAAAAACCAACCAAGTGACAATGCTACAAATAAGGAACCAACCGGCC CCGCTGGCACTGCCTTTTTCGTATTGCTCTATGACAAGCTCACCAGGCCCTGTATAACCCTGTTTTATACAAACTAGTT TCGTAATAAAACTTTCTCGTGCCGAATTC
Citation	Chesnutt C, Burrus LW, Brown AM, Niswander L. Coordinate regulation of neural tube patterning and proliferation by TGFbeta and WNT activity. Dev Biol. 2004 Oct 15;274(2):334-47.
Copyright	Reprinted from Developmental Biology, Volume 274, Issue 2, Catherine Chesnutt, Laura W. Burrus, Anthony M.C. Brown, and Lee Niswander, Coordinate regulation of neural tube patterning and proliferation by TGFβ and WNT activity, Pages 334-347, Copyright 2004, with permission from Elsevier. Copyright © 2004 Elsevier B.V. All rights reserved.
Comments	The authors said the ASH1 probe is referenced in Jasone et al., 1994. Clone was listed there as acc# U01339.

Stage

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Location (click to highlight)

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13-14

stage 14

Neural Crest
Spinal Cord

Entry 4

GEISHA Id	Cash-1.McPherson.2000	Data Source	Publication
Complete cDNA Template Probe	show GAATTCGGCACGAGCCGTGCACACGTGAGCGTCACGAGCCTCCCCGACGTCGACGAAGTTCGGAGGGAGAAGGGAGGGG GGGCCCGAGCCGTCCCGTTCCCGGACGGTCGACGTCCTCCGTGGACGCTCTCCCCTCTCCGACTTCCGCGCGTGACGAG CGGAGCCGCCGCTCCTCTCTCTCCCCCCTCTATCTCTCCACCTCCGGCGGGGGGGCAACGGGGAGCGCCCCCGCCTCGC ACGACGCCCCCGCGCCCATGGCCAGCGGCAGCCCCGCCGGGATGGCCAGCGGGCAGCCGCCCTTCCTGCAGCCCGCCTG CTTCTTCGCCGCCGCCGTGGCCGCCGCCGCCGCCGCCGCTCCGCCGGGGCCGCCCCCGGGGGCGCCGCCGCCGCCGCTC CCGCAGCTGAGCCCGGCGGGCGGGCGGCCGTCTCCCGGCGGGAAGCCGTCCGCGGCGCGGGCCGCCAAGCGGCAGCGCT CGGCCTCGCCGGAGCTGATGCGCTGCAAGAGGCGGCTCAACTTCAGCGGCTTCGGCTACAGCCTCCCGCAGCAGCAGCC CGCCGCCGTAGCGCGGCGCAACGAGCGGGAGCGCAACCGAGTCAAGCTGGTGAACCTTGGGTTCGCCACGCTCCGCGAG CACGTCCCCAACGGCGCGGCTAACAAGAAGATGAGCAAAGTGGAGACGCTGCGCTCCGCCGTCGAGTACATCCGCGCCC TGCAGCAGCTGCTCGACGAGCACGACGCCGTCAGCGCCGCCTCCCAGGCCGGCGTGCTGTCGCCCACCATCTCGCCCGG TTACTCCCACGACATGAACTCCATGGCGGGCTCCCCCGTCTCCTCCTACTCCTCCGACGAGGGCTCCTACGACCCGCTC AGCCCCGAGGAGCAGGAGCTGCTCGACTTCACCAGCTGGTTCTGATCCGGCCCCGGCAGGACGCTCGCGAAAGGGGAGA TAAGCGCCTCTCCCGCAACCACGCTCGCGGAGCACGCCACCGCCGGCCCACTACCAACTGTTGCGTTTTCCTCTCCCCG CCGTCGGAGGGCGGTGCGGGCACGGCTCTCGGCGGGCGGCTGCGTCCCCGCGGGGCGGGCGGGGCGGCCACCCTCAGCC CGGAGGCCCGAACCCCGTTCTGTGCCCCGCGGTGGCCCCGAGGAGCCCTTTCCCTGCTGCCCGTCCCCTCCGTACGGCG TCCGCGCTCTCTGGACCACGTTTCCCGGTGTTTGTGGAGATGTCGAGATGAAGCTATGCTGTACTCAAAGAACCCCCCC CCCGACCCGTTCCAGAGTCGCCCTCCCTCCGACCCTTTTTTTTTTCACCATAGAATGCTTCCAATTTTTTTTTTTTTAA TTATTATTTTGGTGAATTTTTTTATTATAAGAAAATCTATTTGTATCCTCCCTGACCAGTTTGGGGACATATATTAAGC TATTTTTGTACATAAGAGAGAGAGAGATTTATAGAGGTTTTGTACAAATGGTTTAAAATGTGTATATCTTGATACGTTT TTTAATACACGATGCTTTTACCTCTCGGTGTGTAGACGTGCGGTCGGCGTTACTTTCCCGCTGCCATCTCGGTCCGTGC TTTTGTCGAGGCCTTGGACTCCCTCCAGCTGTACTTTAGCACCGACGTGTCTTACTTCATAGAAACTTTGTTAATGTAT TAATAACGTTGTGAAAACCGTGTTCCGAGGGAACCACGTTTATGCAGCTATTGTCCAAACGCAGAAGAGCGGCCGTCTG GTTTTGTATGCTGCCTTTTGGGGGGGAAAAAAAAAAAACCAACCAAGTGACAATGCTACAAATAAGGAACCAACCGGCC CCGCTGGCACTGCCTTTTTCGTATTGCTCTATGACAAGCTCACCAGGCCCTGTATAACCCTGTTTTATACAAACTAGTT TCGTAATAAAACTTTCTCGTGCCGAATTC
Citation	McPherson CE, Varley JE, Maxwell GD. Expression and regulation of type I BMP receptors during early avian sympathetic ganglion development. Dev Biol. 2000 May 1;221(1):220-32.
Copyright	Reprinted with permission from Elsevier. Copyright © 2000 Elsevier B.V. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_421225). Images are Quail, sequence and map are from chick ASCL1.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 16

stage 17

stage 18

Dermomyotome
Spinal Ganglia and Nerves

Figure 4 compares the expressions of Cash-1, BMP-4, BMPR-IA, and BMPR-IB mRNA in stage 16, 17, and 18 quail embryos.
Quail
Sympathetic Ganglia

19-23

stage 23

Spinal Ganglia and Nerves

Figure 2 compares the expressions of BMP-4, BMPR-IA, BMPR-IB, and TH mRNAs in stage HH23 quail embryos.
Quail
Sympathetic Ganglia

Entry 5

GEISHA Id	CASH1.Maier.2009	Data Source	Publication
Complete cDNA Template Probe	show GAATTCGGCACGAGCCGTGCACACGTGAGCGTCACGAGCCTCCCCGACGTCGACGAAGTTCGGAGGGAGAAGGGAGGGG GGGCCCGAGCCGTCCCGTTCCCGGACGGTCGACGTCCTCCGTGGACGCTCTCCCCTCTCCGACTTCCGCGCGTGACGAG CGGAGCCGCCGCTCCTCTCTCTCCCCCCTCTATCTCTCCACCTCCGGCGGGGGGGCAACGGGGAGCGCCCCCGCCTCGC ACGACGCCCCCGCGCCCATGGCCAGCGGCAGCCCCGCCGGGATGGCCAGCGGGCAGCCGCCCTTCCTGCAGCCCGCCTG CTTCTTCGCCGCCGCCGTGGCCGCCGCCGCCGCCGCCGCTCCGCCGGGGCCGCCCCCGGGGGCGCCGCCGCCGCCGCTC CCGCAGCTGAGCCCGGCGGGCGGGCGGCCGTCTCCCGGCGGGAAGCCGTCCGCGGCGCGGGCCGCCAAGCGGCAGCGCT CGGCCTCGCCGGAGCTGATGCGCTGCAAGAGGCGGCTCAACTTCAGCGGCTTCGGCTACAGCCTCCCGCAGCAGCAGCC CGCCGCCGTAGCGCGGCGCAACGAGCGGGAGCGCAACCGAGTCAAGCTGGTGAACCTTGGGTTCGCCACGCTCCGCGAG CACGTCCCCAACGGCGCGGCTAACAAGAAGATGAGCAAAGTGGAGACGCTGCGCTCCGCCGTCGAGTACATCCGCGCCC TGCAGCAGCTGCTCGACGAGCACGACGCCGTCAGCGCCGCCTCCCAGGCCGGCGTGCTGTCGCCCACCATCTCGCCCGG TTACTCCCACGACATGAACTCCATGGCGGGCTCCCCCGTCTCCTCCTACTCCTCCGACGAGGGCTCCTACGACCCGCTC AGCCCCGAGGAGCAGGAGCTGCTCGACTTCACCAGCTGGTTCTGATCCGGCCCCGGCAGGACGCTCGCGAAAGGGGAGA TAAGCGCCTCTCCCGCAACCACGCTCGCGGAGCACGCCACCGCCGGCCCACTACCAACTGTTGCGTTTTCCTCTCCCCG CCGTCGGAGGGCGGTGCGGGCACGGCTCTCGGCGGGCGGCTGCGTCCCCGCGGGGCGGGCGGGGCGGCCACCCTCAGCC CGGAGGCCCGAACCCCGTTCTGTGCCCCGCGGTGGCCCCGAGGAGCCCTTTCCCTGCTGCCCGTCCCCTCCGTACGGCG TCCGCGCTCTCTGGACCACGTTTCCCGGTGTTTGTGGAGATGTCGAGATGAAGCTATGCTGTACTCAAAGAACCCCCCC CCCGACCCGTTCCAGAGTCGCCCTCCCTCCGACCCTTTTTTTTTTCACCATAGAATGCTTCCAATTTTTTTTTTTTTAA TTATTATTTTGGTGAATTTTTTTATTATAAGAAAATCTATTTGTATCCTCCCTGACCAGTTTGGGGACATATATTAAGC TATTTTTGTACATAAGAGAGAGAGAGATTTATAGAGGTTTTGTACAAATGGTTTAAAATGTGTATATCTTGATACGTTT TTTAATACACGATGCTTTTACCTCTCGGTGTGTAGACGTGCGGTCGGCGTTACTTTCCCGCTGCCATCTCGGTCCGTGC TTTTGTCGAGGCCTTGGACTCCCTCCAGCTGTACTTTAGCACCGACGTGTCTTACTTCATAGAAACTTTGTTAATGTAT TAATAACGTTGTGAAAACCGTGTTCCGAGGGAACCACGTTTATGCAGCTATTGTCCAAACGCAGAAGAGCGGCCGTCTG GTTTTGTATGCTGCCTTTTGGGGGGGAAAAAAAAAAAACCAACCAAGTGACAATGCTACAAATAAGGAACCAACCGGCC CCGCTGGCACTGCCTTTTTCGTATTGCTCTATGACAAGCTCACCAGGCCCTGTATAACCCTGTTTTATACAAACTAGTT TCGTAATAAAACTTTCTCGTGCCGAATTC
Citation	Maier E, Gunhaga L. Dynamic expression of neurogenic markers in the developing chick olfactory epithelium. Dev Dyn. 2009 Jun;238(6):1617-25.
Copyright	Dev. Dyn Copyright © 2009 John Wiley & Sons, Inc. All Rights Reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc #NM_204412.1)

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 14

stage 17

Nasal Placode/Nerve

19-24

stage 22

Nasal Placode/Nerve

25-30

stage 29

Nasal Placode/Nerve

31-34

stage 34

Nasal Placode/Nerve

Entry 6

GEISHA Id	CASH1/ASCL1.Sanders.2002	Data Source	Publication
Complete cDNA Template Probe	show GAATTCGGCACGAGCCGTGCACACGTGAGCGTCACGAGCCTCCCCGACGTCGACGAAGTTCGGAGGGAGAAGGGAGGGG GGGCCCGAGCCGTCCCGTTCCCGGACGGTCGACGTCCTCCGTGGACGCTCTCCCCTCTCCGACTTCCGCGCGTGACGAG CGGAGCCGCCGCTCCTCTCTCTCCCCCCTCTATCTCTCCACCTCCGGCGGGGGGGCAACGGGGAGCGCCCCCGCCTCGC ACGACGCCCCCGCGCCCATGGCCAGCGGCAGCCCCGCCGGGATGGCCAGCGGGCAGCCGCCCTTCCTGCAGCCCGCCTG CTTCTTCGCCGCCGCCGTGGCCGCCGCCGCCGCCGCCGCTCCGCCGGGGCCGCCCCCGGGGGCGCCGCCGCCGCCGCTC CCGCAGCTGAGCCCGGCGGGCGGGCGGCCGTCTCCCGGCGGGAAGCCGTCCGCGGCGCGGGCCGCCAAGCGGCAGCGCT CGGCCTCGCCGGAGCTGATGCGCTGCAAGAGGCGGCTCAACTTCAGCGGCTTCGGCTACAGCCTCCCGCAGCAGCAGCC CGCCGCCGTAGCGCGGCGCAACGAGCGGGAGCGCAACCGAGTCAAGCTGGTGAACCTTGGGTTCGCCACGCTCCGCGAG CACGTCCCCAACGGCGCGGCTAACAAGAAGATGAGCAAAGTGGAGACGCTGCGCTCCGCCGTCGAGTACATCCGCGCCC TGCAGCAGCTGCTCGACGAGCACGACGCCGTCAGCGCCGCCTCCCAGGCCGGCGTGCTGTCGCCCACCATCTCGCCCGG TTACTCCCACGACATGAACTCCATGGCGGGCTCCCCCGTCTCCTCCTACTCCTCCGACGAGGGCTCCTACGACCCGCTC AGCCCCGAGGAGCAGGAGCTGCTCGACTTCACCAGCTGGTTCTGATCCGGCCCCGGCAGGACGCTCGCGAAAGGGGAGA TAAGCGCCTCTCCCGCAACCACGCTCGCGGAGCACGCCACCGCCGGCCCACTACCAACTGTTGCGTTTTCCTCTCCCCG CCGTCGGAGGGCGGTGCGGGCACGGCTCTCGGCGGGCGGCTGCGTCCCCGCGGGGCGGGCGGGGCGGCCACCCTCAGCC CGGAGGCCCGAACCCCGTTCTGTGCCCCGCGGTGGCCCCGAGGAGCCCTTTCCCTGCTGCCCGTCCCCTCCGTACGGCG TCCGCGCTCTCTGGACCACGTTTCCCGGTGTTTGTGGAGATGTCGAGATGAAGCTATGCTGTACTCAAAGAACCCCCCC CCCGACCCGTTCCAGAGTCGCCCTCCCTCCGACCCTTTTTTTTTTCACCATAGAATGCTTCCAATTTTTTTTTTTTTAA TTATTATTTTGGTGAATTTTTTTATTATAAGAAAATCTATTTGTATCCTCCCTGACCAGTTTGGGGACATATATTAAGC TATTTTTGTACATAAGAGAGAGAGAGATTTATAGAGGTTTTGTACAAATGGTTTAAAATGTGTATATCTTGATACGTTT TTTAATACACGATGCTTTTACCTCTCGGTGTGTAGACGTGCGGTCGGCGTTACTTTCCCGCTGCCATCTCGGTCCGTGC TTTTGTCGAGGCCTTGGACTCCCTCCAGCTGTACTTTAGCACCGACGTGTCTTACTTCATAGAAACTTTGTTAATGTAT TAATAACGTTGTGAAAACCGTGTTCCGAGGGAACCACGTTTATGCAGCTATTGTCCAAACGCAGAAGAGCGGCCGTCTG GTTTTGTATGCTGCCTTTTGGGGGGGAAAAAAAAAAAACCAACCAAGTGACAATGCTACAAATAAGGAACCAACCGGCC CCGCTGGCACTGCCTTTTTCGTATTGCTCTATGACAAGCTCACCAGGCCCTGTATAACCCTGTTTTATACAAACTAGTT TCGTAATAAAACTTTCTCGTGCCGAATTC
Citation	Sanders TA, Lumsden A, Ragsdale CW. Arcuate plan of chick midbrain development. J Neurosci. 2002 Dec 15;22(24):10742-50.
Copyright	Copyright © 2002-2011 by the Society for Neuroscience
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc# NM_204412.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-24

stage 24

Forebrain
Hindbrain
Isthmus/MHB
Midbrain

Entry 7

GEISHA Id	ASCL1.Buchtova.2010	Data Source	Publication
Complete cDNA Template Probe	show `TCGGTCCGTGCTTTTGTCGAGGCCTTGGACTCCCTCCAGCTGTACTTTAGCACCGACGTGTCTTACTTC`
Citation	Buchtová M, Kuo WP, Nimmagadda S, Benson SL, Geetha-Loganathan P, Logan C, Au-Yeung T, Chiang E, Fu K, Richman JM. Whole genome microarray analysis of chicken embryo facial prominences. Dev Dyn. 2010 Feb;239(2):574-91.
Copyright	Copyright © 19992011 John Wiley & Sons, Inc. All Rights Reserved.
Comments	The probe for ASCL1 was amplified by PCR using the following primers: 5′-TCGGTCCGTGCTTTTGTC-3′ and 5′-GAAGTAAGACACGTCGGTGCT-3′.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 15

stage 17

Ear/Otic Placode
Eye
Face Mesenchyme
Forebrain
Hindbrain
Midbrain
Nasal Placode/Nerve
Spinal Cord

Optic recess

25-26

stage 26

Nasal Placode/Nerve

Entry 8

GEISHA Id	ASCL1.LeDréau.2012	Data Source	Publication
Complete cDNA Template Probe	show GAATTCGGCACGAGCCGTGCACACGTGAGCGTCACGAGCCTCCCCGACGTCGACGAAGTTCGGAGGGAGAAGGGAGGGG GGGCCCGAGCCGTCCCGTTCCCGGACGGTCGACGTCCTCCGTGGACGCTCTCCCCTCTCCGACTTCCGCGCGTGACGAG CGGAGCCGCCGCTCCTCTCTCTCCCCCCTCTATCTCTCCACCTCCGGCGGGGGGGCAACGGGGAGCGCCCCCGCCTCGC ACGACGCCCCCGCGCCCATGGCCAGCGGCAGCCCCGCCGGGATGGCCAGCGGGCAGCCGCCCTTCCTGCAGCCCGCCTG CTTCTTCGCCGCCGCCGTGGCCGCCGCCGCCGCCGCCGCTCCGCCGGGGCCGCCCCCGGGGGCGCCGCCGCCGCCGCTC CCGCAGCTGAGCCCGGCGGGCGGGCGGCCGTCTCCCGGCGGGAAGCCGTCCGCGGCGCGGGCCGCCAAGCGGCAGCGCT CGGCCTCGCCGGAGCTGATGCGCTGCAAGAGGCGGCTCAACTTCAGCGGCTTCGGCTACAGCCTCCCGCAGCAGCAGCC CGCCGCCGTAGCGCGGCGCAACGAGCGGGAGCGCAACCGAGTCAAGCTGGTGAACCTTGGGTTCGCCACGCTCCGCGAG CACGTCCCCAACGGCGCGGCTAACAAGAAGATGAGCAAAGTGGAGACGCTGCGCTCCGCCGTCGAGTACATCCGCGCCC TGCAGCAGCTGCTCGACGAGCACGACGCCGTCAGCGCCGCCTCCCAGGCCGGCGTGCTGTCGCCCACCATCTCGCCCGG TTACTCCCACGACATGAACTCCATGGCGGGCTCCCCCGTCTCCTCCTACTCCTCCGACGAGGGCTCCTACGACCCGCTC AGCCCCGAGGAGCAGGAGCTGCTCGACTTCACCAGCTGGTTCTGATCCGGCCCCGGCAGGACGCTCGCGAAAGGGGAGA TAAGCGCCTCTCCCGCAACCACGCTCGCGGAGCACGCCACCGCCGGCCCACTACCAACTGTTGCGTTTTCCTCTCCCCG CCGTCGGAGGGCGGTGCGGGCACGGCTCTCGGCGGGCGGCTGCGTCCCCGCGGGGCGGGCGGGGCGGCCACCCTCAGCC CGGAGGCCCGAACCCCGTTCTGTGCCCCGCGGTGGCCCCGAGGAGCCCTTTCCCTGCTGCCCGTCCCCTCCGTACGGCG TCCGCGCTCTCTGGACCACGTTTCCCGGTGTTTGTGGAGATGTCGAGATGAAGCTATGCTGTACTCAAAGAACCCCCCC CCCGACCCGTTCCAGAGTCGCCCTCCCTCCGACCCTTTTTTTTTTCACCATAGAATGCTTCCAATTTTTTTTTTTTTAA TTATTATTTTGGTGAATTTTTTTATTATAAGAAAATCTATTTGTATCCTCCCTGACCAGTTTGGGGACATATATTAAGC TATTTTTGTACATAAGAGAGAGAGAGATTTATAGAGGTTTTGTACAAATGGTTTAAAATGTGTATATCTTGATACGTTT TTTAATACACGATGCTTTTACCTCTCGGTGTGTAGACGTGCGGTCGGCGTTACTTTCCCGCTGCCATCTCGGTCCGTGC TTTTGTCGAGGCCTTGGACTCCCTCCAGCTGTACTTTAGCACCGACGTGTCTTACTTCATAGAAACTTTGTTAATGTAT TAATAACGTTGTGAAAACCGTGTTCCGAGGGAACCACGTTTATGCAGCTATTGTCCAAACGCAGAAGAGCGGCCGTCTG GTTTTGTATGCTGCCTTTTGGGGGGGAAAAAAAAAAAACCAACCAAGTGACAATGCTACAAATAAGGAACCAACCGGCC CCGCTGGCACTGCCTTTTTCGTATTGCTCTATGACAAGCTCACCAGGCCCTGTATAACCCTGTTTTATACAAACTAGTT TCGTAATAAAACTTTCTCGTGCCGAATTC
Citation	Le Dréau G, Garcia-Campmany L, Rabadán MA, Ferronha T, Tozer S, Briscoe J, Martí E. Canonical BMP7 activity is required for the generation of discrete neuronal populations in the dorsal spinal cord. Development. 2012 Jan;139(2):259-68.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204412.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 18

Neural Plate/Tube
Surface Ectoderm

Entry 9

GEISHA Id	CASH1.Frowein.2002	Data Source	Publication
Complete cDNA Template Probe	show GAATTCGGCACGAGCCGTGCACACGTGAGCGTCACGAGCCTCCCCGACGTCGACGAAGTTCGGAGGGAGAAGGGAGGGG GGGCCCGAGCCGTCCCGTTCCCGGACGGTCGACGTCCTCCGTGGACGCTCTCCCCTCTCCGACTTCCGCGCGTGACGAG CGGAGCCGCCGCTCCTCTCTCTCCCCCCTCTATCTCTCCACCTCCGGCGGGGGGGCAACGGGGAGCGCCCCCGCCTCGC ACGACGCCCCCGCGCCCATGGCCAGCGGCAGCCCCGCCGGGATGGCCAGCGGGCAGCCGCCCTTCCTGCAGCCCGCCTG CTTCTTCGCCGCCGCCGTGGCCGCCGCCGCCGCCGCCGCTCCGCCGGGGCCGCCCCCGGGGGCGCCGCCGCCGCCGCTC CCGCAGCTGAGCCCGGCGGGCGGGCGGCCGTCTCCCGGCGGGAAGCCGTCCGCGGCGCGGGCCGCCAAGCGGCAGCGCT CGGCCTCGCCGGAGCTGATGCGCTGCAAGAGGCGGCTCAACTTCAGCGGCTTCGGCTACAGCCTCCCGCAGCAGCAGCC CGCCGCCGTAGCGCGGCGCAACGAGCGGGAGCGCAACCGAGTCAAGCTGGTGAACCTTGGGTTCGCCACGCTCCGCGAG CACGTCCCCAACGGCGCGGCTAACAAGAAGATGAGCAAAGTGGAGACGCTGCGCTCCGCCGTCGAGTACATCCGCGCCC TGCAGCAGCTGCTCGACGAGCACGACGCCGTCAGCGCCGCCTCCCAGGCCGGCGTGCTGTCGCCCACCATCTCGCCCGG TTACTCCCACGACATGAACTCCATGGCGGGCTCCCCCGTCTCCTCCTACTCCTCCGACGAGGGCTCCTACGACCCGCTC AGCCCCGAGGAGCAGGAGCTGCTCGACTTCACCAGCTGGTTCTGATCCGGCCCCGGCAGGACGCTCGCGAAAGGGGAGA TAAGCGCCTCTCCCGCAACCACGCTCGCGGAGCACGCCACCGCCGGCCCACTACCAACTGTTGCGTTTTCCTCTCCCCG CCGTCGGAGGGCGGTGCGGGCACGGCTCTCGGCGGGCGGCTGCGTCCCCGCGGGGCGGGCGGGGCGGCCACCCTCAGCC CGGAGGCCCGAACCCCGTTCTGTGCCCCGCGGTGGCCCCGAGGAGCCCTTTCCCTGCTGCCCGTCCCCTCCGTACGGCG TCCGCGCTCTCTGGACCACGTTTCCCGGTGTTTGTGGAGATGTCGAGATGAAGCTATGCTGTACTCAAAGAACCCCCCC CCCGACCCGTTCCAGAGTCGCCCTCCCTCCGACCCTTTTTTTTTTCACCATAGAATGCTTCCAATTTTTTTTTTTTTAA TTATTATTTTGGTGAATTTTTTTATTATAAGAAAATCTATTTGTATCCTCCCTGACCAGTTTGGGGACATATATTAAGC TATTTTTGTACATAAGAGAGAGAGAGATTTATAGAGGTTTTGTACAAATGGTTTAAAATGTGTATATCTTGATACGTTT TTTAATACACGATGCTTTTACCTCTCGGTGTGTAGACGTGCGGTCGGCGTTACTTTCCCGCTGCCATCTCGGTCCGTGC TTTTGTCGAGGCCTTGGACTCCCTCCAGCTGTACTTTAGCACCGACGTGTCTTACTTCATAGAAACTTTGTTAATGTAT TAATAACGTTGTGAAAACCGTGTTCCGAGGGAACCACGTTTATGCAGCTATTGTCCAAACGCAGAAGAGCGGCCGTCTG GTTTTGTATGCTGCCTTTTGGGGGGGAAAAAAAAAAAACCAACCAAGTGACAATGCTACAAATAAGGAACCAACCGGCC CCGCTGGCACTGCCTTTTTCGTATTGCTCTATGACAAGCTCACCAGGCCCTGTATAACCCTGTTTTATACAAACTAGTT TCGTAATAAAACTTTCTCGTGCCGAATTC
Citation	Frowein J, Campbell K, Götz M. Expression of Ngn1, Ngn2, Cash1, Gsh2 and Sfrp1 in the developing chick telencephalon. Mech Dev. 2002 Jan;110(1-2):249-52.
Copyright	Copyright © 2002 Elsevier Science Ireland Ltd. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_204412.1)

Stage

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Location (click to highlight)

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stage 31

Telencephalon

Entry 10

GEISHA Id	CASH1.Howard.2000	Data Source	Publication
Complete cDNA Template Probe	show GAATTCGGCACGAGCCGTGCACACGTGAGCGTCACGAGCCTCCCCGACGTCGACGAAGTTCGGAGGGAGAAGGGAGGGG GGGCCCGAGCCGTCCCGTTCCCGGACGGTCGACGTCCTCCGTGGACGCTCTCCCCTCTCCGACTTCCGCGCGTGACGAG CGGAGCCGCCGCTCCTCTCTCTCCCCCCTCTATCTCTCCACCTCCGGCGGGGGGGCAACGGGGAGCGCCCCCGCCTCGC ACGACGCCCCCGCGCCCATGGCCAGCGGCAGCCCCGCCGGGATGGCCAGCGGGCAGCCGCCCTTCCTGCAGCCCGCCTG CTTCTTCGCCGCCGCCGTGGCCGCCGCCGCCGCCGCCGCTCCGCCGGGGCCGCCCCCGGGGGCGCCGCCGCCGCCGCTC CCGCAGCTGAGCCCGGCGGGCGGGCGGCCGTCTCCCGGCGGGAAGCCGTCCGCGGCGCGGGCCGCCAAGCGGCAGCGCT CGGCCTCGCCGGAGCTGATGCGCTGCAAGAGGCGGCTCAACTTCAGCGGCTTCGGCTACAGCCTCCCGCAGCAGCAGCC CGCCGCCGTAGCGCGGCGCAACGAGCGGGAGCGCAACCGAGTCAAGCTGGTGAACCTTGGGTTCGCCACGCTCCGCGAG CACGTCCCCAACGGCGCGGCTAACAAGAAGATGAGCAAAGTGGAGACGCTGCGCTCCGCCGTCGAGTACATCCGCGCCC TGCAGCAGCTGCTCGACGAGCACGACGCCGTCAGCGCCGCCTCCCAGGCCGGCGTGCTGTCGCCCACCATCTCGCCCGG TTACTCCCACGACATGAACTCCATGGCGGGCTCCCCCGTCTCCTCCTACTCCTCCGACGAGGGCTCCTACGACCCGCTC AGCCCCGAGGAGCAGGAGCTGCTCGACTTCACCAGCTGGTTCTGATCCGGCCCCGGCAGGACGCTCGCGAAAGGGGAGA TAAGCGCCTCTCCCGCAACCACGCTCGCGGAGCACGCCACCGCCGGCCCACTACCAACTGTTGCGTTTTCCTCTCCCCG CCGTCGGAGGGCGGTGCGGGCACGGCTCTCGGCGGGCGGCTGCGTCCCCGCGGGGCGGGCGGGGCGGCCACCCTCAGCC CGGAGGCCCGAACCCCGTTCTGTGCCCCGCGGTGGCCCCGAGGAGCCCTTTCCCTGCTGCCCGTCCCCTCCGTACGGCG TCCGCGCTCTCTGGACCACGTTTCCCGGTGTTTGTGGAGATGTCGAGATGAAGCTATGCTGTACTCAAAGAACCCCCCC CCCGACCCGTTCCAGAGTCGCCCTCCCTCCGACCCTTTTTTTTTTCACCATAGAATGCTTCCAATTTTTTTTTTTTTAA TTATTATTTTGGTGAATTTTTTTATTATAAGAAAATCTATTTGTATCCTCCCTGACCAGTTTGGGGACATATATTAAGC TATTTTTGTACATAAGAGAGAGAGAGATTTATAGAGGTTTTGTACAAATGGTTTAAAATGTGTATATCTTGATACGTTT TTTAATACACGATGCTTTTACCTCTCGGTGTGTAGACGTGCGGTCGGCGTTACTTTCCCGCTGCCATCTCGGTCCGTGC TTTTGTCGAGGCCTTGGACTCCCTCCAGCTGTACTTTAGCACCGACGTGTCTTACTTCATAGAAACTTTGTTAATGTAT TAATAACGTTGTGAAAACCGTGTTCCGAGGGAACCACGTTTATGCAGCTATTGTCCAAACGCAGAAGAGCGGCCGTCTG GTTTTGTATGCTGCCTTTTGGGGGGGAAAAAAAAAAAACCAACCAAGTGACAATGCTACAAATAAGGAACCAACCGGCC CCGCTGGCACTGCCTTTTTCGTATTGCTCTATGACAAGCTCACCAGGCCCTGTATAACCCTGTTTTATACAAACTAGTT TCGTAATAAAACTTTCTCGTGCCGAATTC
Citation	Howard MJ, Stanke M, Schneider C, Wu X, Rohrer H. The transcription factor dHAND is a downstream effector of BMPs in sympathetic neuron specification. Development. 2000 Sep;127(18):4073-81.
Copyright	Copyright is held by the authors. Published by The Company of Biologists, Ltd.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_204412.1 )

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 18

Neural Crest

sympathetic chain

Entry 11

GEISHA Id	ASCL1.Ratie.2013	Data Source	Publication
Complete cDNA Template Probe	show GAATTCGGCACGAGCCGTGCACACGTGAGCGTCACGAGCCTCCCCGACGTCGACGAAGTTCGGAGGGAGAAGGGAGGGG GGGCCCGAGCCGTCCCGTTCCCGGACGGTCGACGTCCTCCGTGGACGCTCTCCCCTCTCCGACTTCCGCGCGTGACGAG CGGAGCCGCCGCTCCTCTCTCTCCCCCCTCTATCTCTCCACCTCCGGCGGGGGGGCAACGGGGAGCGCCCCCGCCTCGC ACGACGCCCCCGCGCCCATGGCCAGCGGCAGCCCCGCCGGGATGGCCAGCGGGCAGCCGCCCTTCCTGCAGCCCGCCTG CTTCTTCGCCGCCGCCGTGGCCGCCGCCGCCGCCGCCGCTCCGCCGGGGCCGCCCCCGGGGGCGCCGCCGCCGCCGCTC CCGCAGCTGAGCCCGGCGGGCGGGCGGCCGTCTCCCGGCGGGAAGCCGTCCGCGGCGCGGGCCGCCAAGCGGCAGCGCT CGGCCTCGCCGGAGCTGATGCGCTGCAAGAGGCGGCTCAACTTCAGCGGCTTCGGCTACAGCCTCCCGCAGCAGCAGCC CGCCGCCGTAGCGCGGCGCAACGAGCGGGAGCGCAACCGAGTCAAGCTGGTGAACCTTGGGTTCGCCACGCTCCGCGAG CACGTCCCCAACGGCGCGGCTAACAAGAAGATGAGCAAAGTGGAGACGCTGCGCTCCGCCGTCGAGTACATCCGCGCCC TGCAGCAGCTGCTCGACGAGCACGACGCCGTCAGCGCCGCCTCCCAGGCCGGCGTGCTGTCGCCCACCATCTCGCCCGG TTACTCCCACGACATGAACTCCATGGCGGGCTCCCCCGTCTCCTCCTACTCCTCCGACGAGGGCTCCTACGACCCGCTC AGCCCCGAGGAGCAGGAGCTGCTCGACTTCACCAGCTGGTTCTGATCCGGCCCCGGCAGGACGCTCGCGAAAGGGGAGA TAAGCGCCTCTCCCGCAACCACGCTCGCGGAGCACGCCACCGCCGGCCCACTACCAACTGTTGCGTTTTCCTCTCCCCG CCGTCGGAGGGCGGTGCGGGCACGGCTCTCGGCGGGCGGCTGCGTCCCCGCGGGGCGGGCGGGGCGGCCACCCTCAGCC CGGAGGCCCGAACCCCGTTCTGTGCCCCGCGGTGGCCCCGAGGAGCCCTTTCCCTGCTGCCCGTCCCCTCCGTACGGCG TCCGCGCTCTCTGGACCACGTTTCCCGGTGTTTGTGGAGATGTCGAGATGAAGCTATGCTGTACTCAAAGAACCCCCCC CCCGACCCGTTCCAGAGTCGCCCTCCCTCCGACCCTTTTTTTTTTCACCATAGAATGCTTCCAATTTTTTTTTTTTTAA TTATTATTTTGGTGAATTTTTTTATTATAAGAAAATCTATTTGTATCCTCCCTGACCAGTTTGGGGACATATATTAAGC TATTTTTGTACATAAGAGAGAGAGAGATTTATAGAGGTTTTGTACAAATGGTTTAAAATGTGTATATCTTGATACGTTT TTTAATACACGATGCTTTTACCTCTCGGTGTGTAGACGTGCGGTCGGCGTTACTTTCCCGCTGCCATCTCGGTCCGTGC TTTTGTCGAGGCCTTGGACTCCCTCCAGCTGTACTTTAGCACCGACGTGTCTTACTTCATAGAAACTTTGTTAATGTAT TAATAACGTTGTGAAAACCGTGTTCCGAGGGAACCACGTTTATGCAGCTATTGTCCAAACGCAGAAGAGCGGCCGTCTG GTTTTGTATGCTGCCTTTTGGGGGGGAAAAAAAAAAAACCAACCAAGTGACAATGCTACAAATAAGGAACCAACCGGCC CCGCTGGCACTGCCTTTTTCGTATTGCTCTATGACAAGCTCACCAGGCCCTGTATAACCCTGTTTTATACAAACTAGTT TCGTAATAAAACTTTCTCGTGCCGAATTC
Citation	Leslie Ratié, Michelle Ware, Frédérique Barloy-Hubler, Hélène Romé, Isabelle Gicquel, Christèle Dubourg, Véronique David and Valérie Dupé. Novel genes upregulated when NOTCH signalling is disrupted during hypothalamic development. Neural Dev. 2013 Dec 23;8:25. doi: 10.1186/1749-8104-8-25.
Copyright	© 2013 Ratié et al.; licensee BioMed Central Ltd.
Comments	The sequence below was obtained from NCBI (acc # NM_204412.1) using the information provided in the publication as described in Ratie et al.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-15

stage 14

stage 15

Hypothalamus
Mesencephalon

Double Labeled ISH: HEY1, blue; SHH, red
left embryo = control vehicle, DMSO; right embryo = DAPT-treated

Entry 12

GEISHA Id	ASCL1.Ware.2014	Data Source	Publication
Complete cDNA Template Probe	show GAATTCGGCACGAGCCGTGCACACGTGAGCGTCACGAGCCTCCCCGACGTCGACGAAGTTCGGAGGGAGAAGGGAGGGG GGGCCCGAGCCGTCCCGTTCCCGGACGGTCGACGTCCTCCGTGGACGCTCTCCCCTCTCCGACTTCCGCGCGTGACGAG CGGAGCCGCCGCTCCTCTCTCTCCCCCCTCTATCTCTCCACCTCCGGCGGGGGGGCAACGGGGAGCGCCCCCGCCTCGC ACGACGCCCCCGCGCCCATGGCCAGCGGCAGCCCCGCCGGGATGGCCAGCGGGCAGCCGCCCTTCCTGCAGCCCGCCTG CTTCTTCGCCGCCGCCGTGGCCGCCGCCGCCGCCGCCGCTCCGCCGGGGCCGCCCCCGGGGGCGCCGCCGCCGCCGCTC CCGCAGCTGAGCCCGGCGGGCGGGCGGCCGTCTCCCGGCGGGAAGCCGTCCGCGGCGCGGGCCGCCAAGCGGCAGCGCT CGGCCTCGCCGGAGCTGATGCGCTGCAAGAGGCGGCTCAACTTCAGCGGCTTCGGCTACAGCCTCCCGCAGCAGCAGCC CGCCGCCGTAGCGCGGCGCAACGAGCGGGAGCGCAACCGAGTCAAGCTGGTGAACCTTGGGTTCGCCACGCTCCGCGAG CACGTCCCCAACGGCGCGGCTAACAAGAAGATGAGCAAAGTGGAGACGCTGCGCTCCGCCGTCGAGTACATCCGCGCCC TGCAGCAGCTGCTCGACGAGCACGACGCCGTCAGCGCCGCCTCCCAGGCCGGCGTGCTGTCGCCCACCATCTCGCCCGG TTACTCCCACGACATGAACTCCATGGCGGGCTCCCCCGTCTCCTCCTACTCCTCCGACGAGGGCTCCTACGACCCGCTC AGCCCCGAGGAGCAGGAGCTGCTCGACTTCACCAGCTGGTTCTGATCCGGCCCCGGCAGGACGCTCGCGAAAGGGGAGA TAAGCGCCTCTCCCGCAACCACGCTCGCGGAGCACGCCACCGCCGGCCCACTACCAACTGTTGCGTTTTCCTCTCCCCG CCGTCGGAGGGCGGTGCGGGCACGGCTCTCGGCGGGCGGCTGCGTCCCCGCGGGGCGGGCGGGGCGGCCACCCTCAGCC CGGAGGCCCGAACCCCGTTCTGTGCCCCGCGGTGGCCCCGAGGAGCCCTTTCCCTGCTGCCCGTCCCCTCCGTACGGCG TCCGCGCTCTCTGGACCACGTTTCCCGGTGTTTGTGGAGATGTCGAGATGAAGCTATGCTGTACTCAAAGAACCCCCCC CCCGACCCGTTCCAGAGTCGCCCTCCCTCCGACCCTTTTTTTTTTCACCATAGAATGCTTCCAATTTTTTTTTTTTTAA TTATTATTTTGGTGAATTTTTTTATTATAAGAAAATCTATTTGTATCCTCCCTGACCAGTTTGGGGACATATATTAAGC TATTTTTGTACATAAGAGAGAGAGAGATTTATAGAGGTTTTGTACAAATGGTTTAAAATGTGTATATCTTGATACGTTT TTTAATACACGATGCTTTTACCTCTCGGTGTGTAGACGTGCGGTCGGCGTTACTTTCCCGCTGCCATCTCGGTCCGTGC TTTTGTCGAGGCCTTGGACTCCCTCCAGCTGTACTTTAGCACCGACGTGTCTTACTTCATAGAAACTTTGTTAATGTAT TAATAACGTTGTGAAAACCGTGTTCCGAGGGAACCACGTTTATGCAGCTATTGTCCAAACGCAGAAGAGCGGCCGTCTG GTTTTGTATGCTGCCTTTTGGGGGGGAAAAAAAAAAAACCAACCAAGTGACAATGCTACAAATAAGGAACCAACCGGCC CCGCTGGCACTGCCTTTTTCGTATTGCTCTATGACAAGCTCACCAGGCCCTGTATAACCCTGTTTTATACAAACTAGTT TCGTAATAAAACTTTCTCGTGCCGAATTC
Citation	Ware M, Hamdi-Rozé H and Dupé V (2014) Notch signaling and proneural genes work together to control the neural building blocks for the initial scaffold in the hypothalamus. Front Neuroanat. 2014 Dec 2;8:140. doi: 10.3389/fnana.2014.00140.
Copyright	Copyright © 2014 Ware, Hamdi-Rozé and Dupé
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # NM_204412.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 10

Hypothalamus

13-15

stage 15

Hypothalamus

Double labeled in situ: Ascl (purple), Shh (Red)

Data from NCBI Unigene EST Profile
Unigene ID: Gga.488

Mouse

Emage
Eurexpress
MGI GXD

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN

Home

Contact

ASCL1achaete-scute family bHLH transcription factor 1

Entry 1

Entry 2

Entry 3

Entry 4

Entry 5

Entry 6

Entry 7

Entry 8

Entry 9

Entry 10

Entry 11

Entry 12

Mouse

Frog

Fruit Fly

Zebra Finch

Zebrafish

ASCL1
achaete-scute family bHLH transcription factor 1