GEISHA - A Chicken Embryo Gene Expression Database
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HES4
hes family bHLH transcription factor 4

Gene
Official SymbolHES4
Official Full Namehes family bHLH transcription factor 4
CGNC ID49182
also known asHAIRY1, HES1, c-hairy1A, transcription factor HES-4|C-HAIRY1|c-hairy1B|hairy and enhancer of split 4|transcription factor HES-1, HES-1, C-HAIRY1
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001005848
PolypeptideNP_001005848
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.3754
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly38995FBgn0001168
Human3280ENSG00000114315MIM:139605
Mouse15205ENSMUSG00000022528All phenotypic alleles (6):Targeted, knock-out(2) Targeted, other(4) MGI:104853
Xenopus496617, 397813, 379073487994
Zebrafish30288ENSDARG00000006514ZDB-GENE-980526-144ZFIN:ZDB-GENE-980526-144
Gene Ontology
Molecular FunctionDNA binding, protein dimerization activity
Biological Processregulation of transcription, DNA-templated, transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene395128
Ensembl GeneENSGALG00000002055
KEGGgga:395128

Entry 1

GEISHA IdL11Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
TTTCAGACAGCACACAACTTCCTTTACTTTGCTTTGCTTGAACAGAGATAGATCAGCATGTTCAAGTGCGTTGGGTTGA
CTTGCCTCCTGGGCCATGGGAACAGCAGTATCTTCACTAGTGTAGCTAGCACCAACCCACCATGGTGCCTCTGGAGTGC
ATCGGCAGCACAGGCAACTGCATCCCACTGAAGCAGCATCACACCATGGCTTTCTTCTCATCCATCTTTCCCTTTTCAC
AAAATATGTGGTATTTCTCTGCTGTGCTGCTTGGTGTAAATATCTAGCCTGAGCTCTGCCTAAATTGCTGCGCTGTGCT
ATGGGTACTGTTGGAAGACAGTGTAGTCAGGACAAAAAGGAATTATGGTAAAATGTGATTCAAAGCTAGTGTAGATGAA
TCCAGTTTGTTTCCTCTTATTAATGGTGATGTATGAAGAAATGGATCTCAGCTATTCCCAGAAGCATTGCAAGAAATCC
ATTTTCCCATTGTCAAATACAGCACCTATTAAGGGAGAATGGTTTGCATTTGCATACCTACAGGTGGTTTCTCAGTTTC
ATAGGGGAACCT
Reverse cDNA Template Probeshow
GAAGCTCTCTCCCCTAAAGTCTATGGGGGTTTCCAGCTCGTCCCGGCCACTGATGGTCAATTCGCCTTCCTCATCCCCA
ACCCTGCGTTCCCACCTGGCTCTGGACCGGTTATCCCACTCTACGCCAACGCCAACGTCCCAGTGTCCACAAGTGGAGG
CTCTGGGAACGCGTCCACCACCCCATCAGCATCCCCGGTGCAGGGCTTGACATCATTTGGGCACAGCGTGGTGCCGGCA
TCCCAGGCAGGCAGCCCTATTGCTGAGCGCAGGGAGTCCGTCTGGAGGCCGTGGTGACCGTCCCATCCGTCCCTCATCC
CAAAAACTCTGCCTTGGCTCCGTTGTATGGAGCCCCGTTGTGGTTGTTGTATTTTCCTAAGCAGATTTCAACACGGGGA
AAGGATTAAAAAGGACCTCGCTAGGAACCGTGCTATTTATTAATCTCAGAGGTTGGGATCTCGATTTGTATTTTTACTC
CTTTTGAAATGCCTTTATCTGAGATATGTTTGTTTTTTTTTTGTTGGTTTTTTTTTTATTTTTAAGGAGAAATAAATGA
GAAATAGTTTTGTAACAGATAAAAAAAAAAAAAAAAAAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 6
Hensen's Node
Mesoderm, early
Neural Plate/Tube
 
7-12
stage 7
stage 7
stage 8
stage 9
stage 12
Hensen's Node
Midbrain
Neural Plate/Tube
Somites
 
13
stage 13
Anterior Intestinal Portal
Liver
Somites
 

Entry 2

GEISHA Idpgp1n.pk008.b9Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
CAAAACCCTTCCGAGGAAGCTTCTTGAGACCTCCCTGCCATGAATTTGCTCTTCCTTTTTTCTTCCTGCAGCCGCTCTC
AGCGCTGACCCCAGCGTGCTGGGCAAATACCGGGCTGGTTTCAATGAGTGCATGAACGAGGTGACGAGGTTCCTGTCCA
CCTGCGAGGGGGTGAACGCCGATGTGCGAGCCCGCCTGCTGGGCCACCTCTCTGCTTGCCTGGGGCAGATCGTGGCCAT
GAACTACCTGCCACCCCCTCCTGCTGGCCAACCCGCACATCTGGCTCAACCCCTGCACGTCCAACTGCCTCCTACCACC
ACCGGAGCGGTGCCGGTGCCGTGCAAGCTGGAACCGACCGAAGCTCTCTCCCCTAAAGTCTATGGGGGTTTCCAGCTCG
TCCCGGCCACTGACGGTCAATTCGCCTTCCTCATCCCCAACCCTGCGTTCCCACCTGGCTCTGGACCGGTTATCCCACT
CTACGCCAACGCCAACGTCCCAGTGTCCACAAGTGGAGGCTCTGGGAACGCGTCCACCACCCCATCAGCATCCCCGGTG
CAGGGCTTGACATCATTTGGGCACAGTGTGGTGCCGGCATCCCAGGCAGGCAGCCCTATTGCTGAGCGCAGGGAGTCCG
TCTGGAGGCCGTGGTGACCGTCCCATCCATCCCTCATCCCAAAAACTCTGCCTTGGCTCCGTTGTATGGAGCCCCGTTG
TGGTTGTTGTATTTTCCTAAGCAGATTTTAACACGGGGAAAGGATTAAAAAGGACCTCGCTAGGAACCGTGCTATTTAT
TAATCTCAGAGGTTGGGATCTCGATTTGTATTTTTACTCCTTTTGAAATGCCTTTATCCGA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 21
stage 21
stage 21
stage 22
Eye
Hindbrain
Limb Buds
Midbrain
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Spinal Cord
Surface Ectoderm
roof and floorplate HB and MB
25
stage 25
Forebrain
Hindbrain
Limb Buds
Midbrain
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Spinal Cord
Tail
 

Entry 3

GEISHA Idpgr1n.pk001.b14Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GCGCCGCCTCCCGCCCGCCGCCCGCACGGGGCTCCGCGCCCGCCCCCGTGGGGCCGCCCTCCCGCTGCCGTGCCGCGTT
GCGCCGCGGCGGCTGGCGCTGCCGCACCATGCCTGCCGACCTGATGGAGAAGAGCAGCGCCTCGCCGGTGGCCGCCACC
CCCGCCAGCATCAACGCGACGCCCGATAAGCCCAAAACGGCGGCGGAGCACCGGAAGTCCTCCAAACCCATCATGGAGA
AGCGGCGGCGGGCGCGCATCAACGAGAGCCTGGGGCAGCTGAAGACGCTGATCCTGGACGCGCTGAAGAAGGATAGTTC
GCGGCACTCCAAGCTGGAGAAGGCCGACATCCTGGAGATGACCGTCAAGCACCTGCGGAGCCTGCAGCGGGCGCAGATG
ACCGCTGCGCTGAGCACAGACCCTACGGTGCTGGGCAAGTACCGCGCCGGCTTCAGCGAGTGCATGAACGAAGTGACGC
GGTTCCTCTCCACCTGCGAAGGCGTCAACGCTGAGGTGCGCACCCGGCTCCTGGGCCACCTGGCCAGCTGCATGACCCA
GATCAACGCCATCAACTACCCCGTGCCGCCCCCGCCGCTGCCACCCCCACCCGCAGCCTTCGGGCCG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
stage 11
stage 12
Forebrain
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Surface Ectoderm
Telencephalon
anterior neuropore
13-18
stage 17
 pericardium
19-24
stage 19
stage 20
stage 20
stage 21
stage 21
stage 22
Allantois
Amnion
Dermatome
Diencephalon
Extraembryonic
Face Mesenchyme
Hindbrain
Midbrain
Pharyngeal Arches and Clefts
Somatopleure
Surface Ectoderm
Yolk Sack or Stalk
 
25
stage 25
Limb Buds
Somatopleure
 

Entry 4

GEISHA IdHES1.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerTTATAAAAGCTTGCGGCCGCAGAATATAGCGTGCTGGGCAAATACC
Reverse cDNA Template PrimerGCTCTAGAAATTAACCCTCACTAAAGGAACCACAACGGGGCTCCATACcDNA Template Length685
Complete cDNA Template Probeshow
TTTTATAAAAAGCTTGCGGCCGCAGAATATAGCGTGCTGGGCAAATACCGGGCTGGTTTCAATGAGTGCATGAACGAGG
TGACGAGGTTCCTGTCCACCTGCGAGGGGGTGAACGCCGACGTGCGAGCCCGCCTGCTGGGCCACCTCTCTGCTTGCCT
GGGGCAGATCGTGGCCATGAACTACCTGCCACCCCCTCCTGCTGGCCAACCCGCACATCTGGCTCAACCCCTGCACGTC
CAACTGCCTCCTACCACCACCGGAGCGGTGCCGGTGCCGTGCAAGCTGGAACCGACCGAAGCTCTCTCCCCTAAAGTCT
ATGGGGGTTTCCAGCTCGTCCCGGCCACTGACGGTCAATTCGCCTTCCTCATCCCCAACCCTGCGTTCCCACCTGGCTC
TGGACCGGTTATCCCACTCTACGCCAACGCCAACGTCCCAGTGTCCACAAGTGGAGGCTCTGGGAACGCGTCCACCACC
CCATCAGCATCCCCGGTGCAGGGCTTGACATCATTTGGGCACAGCGTGGTGCCGGCATCCCAGGCAGGCAGCCCTATTG
CTGAGCGCAGGGAGTCCGTCTGGAGGCCGTGGTGACCGTCCCATCCGTCCCTCATCCCAAAAACTCTGCCTTGGCTTCC
GTTGTATGGAGCCCTTGTGGTTCCTTTAGTGAGGGTTATTTTTAAAAGCAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
stage 6
stage 6
Early Mesoderm
Epiblast
Hensen's Node
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Tail
Sections pending.
7-12
stage 7
stage 8
stage 8
stage 9
stage 10
stage 11
Forebrain
Hensen's Node
Midbrain
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Somites
Tail
 
13-18
stage 15
stage 17
stage 18
Ear/Otic Placode
Ectoderm
Eye
Forebrain
Head Mesenchyme
Limb Buds
Midbrain
Neural Crest
Outflow Tract
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Retina
Somites
Spinal Cord
Sections pending.
19-24
stage 21
stage 24
Ectoderm
Forebrain
Head Mesenchyme
Limb Buds
Midbrain
Myocardium
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Retina
Somites
Spinal Cord
Spinal Ganglia and Nerves
Sections pending.

Entry 5

GEISHA IdHairy1.Rodrigues.2006Data SourcePublication
Complete cDNA Template Probeshow
ATGCCCGCCGACACGGGCATGGAAAAACCCACCGCTTCCCCCATCGCGGGGGCACCGGCCAGCGCCAGCCACACGCCGG
ACAAACCTCGGAGCGCCAGCGAGCACCGGAAGTCCTCCAAACCCATCATGGAGAAGCGACGGCGGGCGCGCATCAACGA
GAGCCTGGGGCAGCTGAAGATGCTCATCCTGGACGCGTTGAAAAAAGACAGCTCTCGGCACTCCAAGCTGGAGAAGGCG
GACATCCTGGAGATGACGGTGAAGCACCTGAGGAACCTCCAGAGGGCACAGATGGCAGCCGCTCTCAGCGCTGACCCCA
GCGTGCTGGGCAAATACCGGGCTGGTTTCAATGAGTGCATGAACGAGGTGACGAGGTTCCTGTCCACCTGCGAGGGGGT
GAACGCCGACGTGCGAGCCCGCCTGCTGGGCCACCTCTCTGCTTGCCTGGGGCAGATCGTGGCCATGAACTACCTGCCA
CCCCCTCCTGCTGGCCAACCCGCACATCTGGCTCAACCCCTGCACGTCCAACTGCCTCCTACCACCACCGGAGCGGTGC
CGGTGCCGTGCAAGCTGGAACCGACCGAAGCTCTCTCCCCTAAAGTCTATGGGGGTTTCCAGCTCGTCCCGGCCACTGA
CGGTCAATTCGCCTTCCTCATCCCCAACCCTGCGTTCCCACCTGGCTCTGGACCGGTTATCCCACTCTACGCCAACGCC
AACGTCCCAGTGTCCACAAGTGGAGGCTCTGGGAACGCGTCCACCACCCCATCAGCATCCCCGGTGCAGGGCTTGACAT
CATTTGGGCACAGCGTGGTGCCGGCATCCCAGGCAGGCAGCCCTATTGCTGAGCGCAGGGAGTCCGTCTGGAGGCCGTG
GTGACCGTCCCATCCGTCCCTCATCCCAAAAACTCTGCCTTGGCTCCGTTGTATGGAGCCCCGTTGTGGTTGTTGTATT
TTCCTAAGCAGATTTCAACACGGGGAAAGGATTAAAAAGGACCTCGCTAGGAACCGTGCTATTTATTAATCTCAGAGGT
TGGGATCTCGATTTGTATTTTTACTCCTTTTGAAATGCCTTTATCTGAGATA
CitationRodrigues S, Santos J, Palmeirim I. Molecular characterization of the rostral-most somites in early somitic stages of the chick embryo. Gene Expr Patterns. 2006 Oct;6(7):673-7. Epub 2006 Feb 20.
CopyrightReprinted with permission from Elsevier. Copyright © 2006 Elsevier B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001005848).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-10
stage 8
stage 9
stage 10
Head Mesenchyme
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Somites
Figure 2 includes HH stages 8-10.

Entry 6

GEISHA IdHairy1.Vasiliauskas.2003Data SourcePublication
Complete cDNA Template Probeshow
ATGCCCGCCGACACGGGCATGGAAAAACCCACCGCTTCCCCCATCGCGGGGGCACCGGCCAGCGCCAGCCACACGCCGG
ACAAACCTCGGAGCGCCAGCGAGCACCGGAAGTCCTCCAAACCCATCATGGAGAAGCGACGGCGGGCGCGCATCAACGA
GAGCCTGGGGCAGCTGAAGATGCTCATCCTGGACGCGTTGAAAAAAGACAGCTCTCGGCACTCCAAGCTGGAGAAGGCG
GACATCCTGGAGATGACGGTGAAGCACCTGAGGAACCTCCAGAGGGCACAGATGGCAGCCGCTCTCAGCGCTGACCCCA
GCGTGCTGGGCAAATACCGGGCTGGTTTCAATGAGTGCATGAACGAGGTGACGAGGTTCCTGTCCACCTGCGAGGGGGT
GAACGCCGACGTGCGAGCCCGCCTGCTGGGCCACCTCTCTGCTTGCCTGGGGCAGATCGTGGCCATGAACTACCTGCCA
CCCCCTCCTGCTGGCCAACCCGCACATCTGGCTCAACCCCTGCACGTCCAACTGCCTCCTACCACCACCGGAGCGGTGC
CGGTGCCGTGCAAGCTGGAACCGACCGAAGCTCTCTCCCCTAAAGTCTATGGGGGTTTCCAGCTCGTCCCGGCCACTGA
CGGTCAATTCGCCTTCCTCATCCCCAACCCTGCGTTCCCACCTGGCTCTGGACCGGTTATCCCACTCTACGCCAACGCC
AACGTCCCAGTGTCCACAAGTGGAGGCTCTGGGAACGCGTCCACCACCCCATCAGCATCCCCGGTGCAGGGCTTGACAT
CATTTGGGCACAGCGTGGTGCCGGCATCCCAGGCAGGCAGCCCTATTGCTGAGCGCAGGGAGTCCGTCTGGAGGCCGTG
GTGACCGTCCCATCCGTCCCTCATCCCAAAAACTCTGCCTTGGCTCCGTTGTATGGAGCCCCGTTGTGGTTGTTGTATT
TTCCTAAGCAGATTTCAACACGGGGAAAGGATTAAAAAGGACCTCGCTAGGAACCGTGCTATTTATTAATCTCAGAGGT
TGGGATCTCGATTTGTATTTTTACTCCTTTTGAAATGCCTTTATCTGAGATA
CitationVasiliauskas D, Laufer E, Stern CD. A role for hairy1 in regulating chick limb bud growth. Dev Biol. 2003 Oct 1;262(1):94-106.
CopyrightCopyright © 2003 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001005848)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 16
stage 17
stage 18
Limb Buds
Neural Plate/Tube
Somites
 
19-24
stage 19
stage 20
stage 21
stage 23
stage 23
stage 24
Leg Mesenchyme
Limb Buds
Neural Plate/Tube
Somites
Wing Mesenchyme
 
25-30
stage 26
stage 28
stage 30
Leg Mesenchyme
Wing Mesenchyme
 

Entry 7

GEISHA IdHAIRY1.Sheeba.2007Data SourcePublication
Complete cDNA Template Probeshow
ATGCCCGCCGACACGGGCATGGAAAAACCCACCGCTTCCCCCATCGCGGGGGCACCGGCCAGCGCCAGCCACACGCCGG
ACAAACCTCGGAGCGCCAGCGAGCACCGGAAGTCCTCCAAACCCATCATGGAGAAGCGACGGCGGGCGCGCATCAACGA
GAGCCTGGGGCAGCTGAAGATGCTCATCCTGGACGCGTTGAAAAAAGACAGCTCTCGGCACTCCAAGCTGGAGAAGGCG
GACATCCTGGAGATGACGGTGAAGCACCTGAGGAACCTCCAGAGGGCACAGATGGCAGCCGCTCTCAGCGCTGACCCCA
GCGTGCTGGGCAAATACCGGGCTGGTTTCAATGAGTGCATGAACGAGGTGACGAGGTTCCTGTCCACCTGCGAGGGGGT
GAACGCCGACGTGCGAGCCCGCCTGCTGGGCCACCTCTCTGCTTGCCTGGGGCAGATCGTGGCCATGAACTACCTGCCA
CCCCCTCCTGCTGGCCAACCCGCACATCTGGCTCAACCCCTGCACGTCCAACTGCCTCCTACCACCACCGGAGCGGTGC
CGGTGCCGTGCAAGCTGGAACCGACCGAAGCTCTCTCCCCTAAAGTCTATGGGGGTTTCCAGCTCGTCCCGGCCACTGA
CGGTCAATTCGCCTTCCTCATCCCCAACCCTGCGTTCCCACCTGGCTCTGGACCGGTTATCCCACTCTACGCCAACGCC
AACGTCCCAGTGTCCACAAGTGGAGGCTCTGGGAACGCGTCCACCACCCCATCAGCATCCCCGGTGCAGGGCTTGACAT
CATTTGGGCACAGCGTGGTGCCGGCATCCCAGGCAGGCAGCCCTATTGCTGAGCGCAGGGAGTCCGTCTGGAGGCCGTG
GT
CitationSheeba, CJ, Palmeirim, I, Andrade, RP, Chick Hairy1 protein interacts with Sap18, a component of the Sin3/HDAC transcriptional repressor complex. BMC Dev Biol. 2007; 7: 83. Published online 2007 July 10.
Copyright Copyright © 2007 Sheeba et al; licensee BioMed Central Ltd.This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
CommentsThe probe was amplified by PCR using the following primers: 5'ATGCCCGCCGACACGGGCATG3' and 5'CTACCACGGCCGCCAGACG3' and was extracted from NCBI Acc#NM_001005848.1.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13
stage 13
stage 13
Hindbrain
Isthmus/MHB
Paraxial Mesoderm
Spinal Cord
HH stage 13+

Entry 8

GEISHA IdHAIRY1.Tossell.2011Data SourcePublication
Complete cDNA Template Probeshow
GGGCCCGCCGCCAGCCAATGGGAGGGAGCGCCGCCGTTCGCCCGTCGCCTATTGGCTCCGAGGTCGGGAGAAGGGAGGG
GGCGGTGCGCGTGACGGACGGGCGCGGGGAGGACGGCCAATCGGAACCCGGCGTCCGTCCGCCCCGCGCTGCTATTGGC
CGAGGGGAGTGTGGGAACGGCCGCGGCGGCGGTTACACGAATGGGGAGCCGGCGGCGGTATAAAAGGCGGGGGGGCGCC
GCTCGCGGCATTGCCGGCCCCGCCGCGCCAGCGTCGCACGCGTCCGTTGCCCTTTCGGAGCGCCTTCCTTCCCGCGCTT
CCTTTTTTTTTTTTTTTTTAATCCCCTTATTTATTTTTTTTTTCCGATTTCTTCGTTTTTCACTTAATTTCCTTTGGTT
ATTTTAATTTCCCTTTTTACCTCGCCATGCCCGCCGACACGGGCATGGAAAAACCCACCGCTTCCCCCATCGCGGGGGC
ACCGGCCAGCGCCAGCCACACGCCGGACAAACCTCGGAGCGCCAGCGAGCACCGGAAGGTAAATGGCAGCGGATGGCGG
CGAGCCGCGGCCGGGCCGAGGTCGGTGTGCGGGGTCAGGGGACGGGGCCGGGGGCGAGCAGCGGGCGGTGACGGTGTGC
GATGTGCCCGCAGTCCTCCAAACCCATCATGGAGAAGCGACGACGGGCGCGCATCAACGAGAGCCTGGGGCAGCTGAAG
ATGCTCATCCTGGACGCGTTGAAAAAAGACGTGAGTACGGCAGCGATGGGCTCCGGAGGGGAGGGAGGGGGTTGGCGGT
GGGGTGTGATGCGGGGAGGGGGCTCTGAGTGCCGGTGTTGTTCCCTCA
CitationTossell K, Kiecker C, Wizenmann A, Lang E, Irving C. Notch signalling stabilises boundary formation at the midbrain-hindbrain organiser. Development. 2011 Sep;138(17):3745-57. Epub 2011 Jul 27.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # AB045236.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-10
stage 10
stage 10
Isthmus/MHB
Rhombomeres
 

Entry 9

GEISHA IdHairy1.Bell.2004Data SourcePublication
Complete cDNA Template Probeshow
CCATGCCCGCCGACACGGGCATGGAAAAACCCACCGCTTCCCCCATCGCGGGGGCACCGGCCAGCGCCAGTCACACGCC
GGACAAACCTCGGAGCGCCAGCGAGCACCGGAAGTCCTCCAAACCCATCATGGAGAAGCGACGGCGGGCGCGCATCAAC
GAGAGCCTGGGGCAGCTGAAGATGCTCATCCTGGACGCGTTGAAAAAAGACAGCTCTCGGCACTCCAAGCTGGAGAAGG
CGGACATCCTGGAGATGACGGTGAAGCACCTGAGGAACCTCCAGAGGGCACAGATGGCAGCCGCTCTCAGCGCTGACCC
CAGCGTGCTGGGCAAATACCGGGCTGGTTTCAATGAGTGCATGAACGAGGTGACGAGGTTCCTGTCCACCTGCGAGGGG
GTGAACGCCGACGTGCGAGCCCGCCTGCTGGGCCACCTCTCTGCTTGCCTGGGGCAGATCGTGGCCATGAACTACCTGC
CACCCCCTCCTGCTGGCCAACCCGCACATCTGGCTCAACCCCTGCACGTCCAACTGCCTCCTACCACCACCGGAGCGGT
GCCGGTGCCGTGCAAGCTGGAACCGACCGAAGCTCTCTCCCCTAAAGTCTATGGGGGTTTCCAGCTCGTCCCGGCCACT
GACGGTCAATTCGCCTTCCTCATCCCCAACCCTGCGTTCCCACCTGGCTCTGGACCGGTTATCCCACTCTACGCCAACG
CCAACGTCCCAGTGTCCACAGCATGGAGGTCTTCCGAACGCGTCCACCCACCGGCCGGCATCCCCGGTGCAGGGCTTGA
CATCATTTGGGCACGTGTGGTGCCGGCATCCCAGGCAGGCAGCCCTATTGCTGAGCGCAGGGAGGCCGTCTGGCGCCCC
TGGTAG
CitationBell GW, Yatskievych TA, Antin PB. GEISHA, a whole-mount in situ hybridization gene expression screen in chicken embryos. Dev Dyn. 2004 Mar;229(3):677-87.
CopyrightCopyright © 2004 Wiley-Liss, Inc.
CommentsThe probe sequence below was obtained from the GEISHA database using information provided in the publication, Geisha L11.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
Hensen's Node
 
7-12
stage 12
stage 12
Somites
 

Entry 10

GEISHA IdHES1.Moran.2012Data SourcePublication
Complete cDNA Template Probeshow
CGGAAGGTAAATGGCAGCGGATGGCGGCGAGCCCGCGGCCGGGCCGAGTCCTCCAAACCCATCATGGAGAAGCGACGGC
GGGCGCGCATCAACGAGAGCCTGGGGCAGCTGAAGATGCTCATCCTGGACGCGTTGAAAAAAGACAGCTCTCGGCACTC
CAAGCTGGAGAAGGCGGACATCCTGGAGATGACGGTGAAGCACCTGAGGAACCTCCAGAGGGCACAGATGGCAGCCGCT
CTCAGCGCTGACCCCAGCGTGCTGGGCAAATACCGGGCTGGTTTCAATGAGTGCATGAACGAGGTGACGAGGTTCCTGT
CCACCTGCGAGGGGGTGAACGCCGACGTGCGAGCCCGCCTGCTGGGCCACCTCTCTGCTTGCCTGGGGCAGATCGTGGC
CATGAACTACCTGCCACCCCCTCCTGCTGGCCAACCCGCACATCTGGCTCAACCCCTGCACGTCCAACTGCCTCCTACC
ACCACCGGAGCGGTGCCGGTGCCGTGCAAGCTGGAACCGACCGAAGCTCTCTCCCCTAAAGTCTATGGGGGTTTCCAGC
TCGTCCCGGCCACTGACGGTCAATTCGCCTTCCTCATCCCCAACCCTGCGTTCCCACCTGGCTCTGGACCGGTTATCCC
ACTCTACGCCAACGCCAACGTCCCAGTGTCCACAAGTGGAGGCTCTGGGGAACGCGTCCACCATCCCATCAGCATCCCC
TGTGCAAGGGCCTGACATCATTTGGGGCACAGCGTTGGTGGCCGGGATCCCAGGCAGGCCAGCCTATTG
CitationMoran CM, Myers CT, Lewis CM, Krieg PA. Hedgehog regulates angiogenesis of intersegmental vessels through the VEGF signaling pathway. Dev Dyn. 2012 Jun;241(6):1034-42.
CommentsThe cDNA template for the probe was obtained from BBSRC - HES1 (ChEST900h16 5) as described in the publication Moran et al., 2012.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-10
stage 10
stage 10
Primitive Streak
Somites
 

Entry 11

GEISHA Idc-hairy1.Aulehla.1999Data SourcePublication
Complete cDNA Template Probeshow
CCATGCCCGCCGACACGGGCATGGAAAAACCCACCGCTTCCCCCATCGCGGGGGCACCGGCCAGCGCCAGCCACACGCC
GGACAAACCTCGGAGCGCCAGCGAGCACCGGAAGTCCTCCAAACCCATCATGGAGAAGCGACGGCGGGCGCGCATCAAC
GAGAGCCTGGGGCAGCTGAAGATGCTCATCCTGGACGCGTTGAAAAAAGACAGCTCTCGGCACTCCAAGCTGGAGAAGG
CGGACATCCTGGAGATGACGGTGAAGCACCTGAGGAACCTCCAGAGGGCACAGATGGCAGCCGCTCTCAGCGCTGACCC
CAGCGTGCTGGGCAAATACCGGGCTGGTTTCAATGAGTGCATGAACGAGGTGACGAGGTTCCTGTCCACCTGCGAGGGG
GTGAACGCCGACGTGCGAGCCCGCCTGCTGGGCCACCTCTCTGCTTGCCTGGGGCAGATCGTGGCCATGAACTACCTGC
CACCCCCTCCTGCTGGCCAACCCGCACATCTGGCTCAACCCCTGCACGTCCAACTGCCTCCTACCACCACCGGAGCGGT
GCCGGTGCCGTGCAAGCTGGAACCGACCGAAGCTCTCTCCCCTAAAGTCTATGGGGGTTTCCAGCTCGTCCCGGCCACT
GACGGTCAATTCGCCTTCCTCATCCCCAACCCTGCGTTCCCACCTGGCTCTGGACCGGTTATCCCACTCTACGCCAACG
CCAACGTCCCAGTGTCCACAAGTGGAGGCTCTGGGAACGCGTCCACCACCCCATCAGCATCCCCGGTGCAGGGCTTGAC
ATCATTTGGGCACAGCGTGGTGCCGGCATCCCAGGCAGGCAGCCCTATTGCTGAGCGCAGGGAGTCCGTCTGGAGGCCG
TGGTGACCGTCCCATCCGTCCCTCATCCCAAAAACTCTGCCTTGGCTCCGTTGTATGGAGCCCCGTTGTGGTTGTTGTA
TTTTCCTAAGCAGATTTCAACACGGGGAAAGGATTAAAAAGGACCTCGCTAGGAACCGTGCTATTTATTAATCTCAGAG
GTTGGGATCTCGATTTGTATTTTTACTCCTTTTGAAATGCCTTTATCTGAGATATGTTTGTTTTTTTTTTTTGTTGGTT
TTTTTTTTATTTTTAAGGAGAAATAAATGAGAAATAGTTTTGTAACAGATAACTCCATCATGCCAAAGTTGTTTGTATC
CCGTCGGTCCGTGCGTGTGTTGCGTGTGCCTGTGTTGGAGACCTCCGAGAAAAAGAGAACAAAATGATACCGCAGGTGT
TGAAATAAATTGCTCTTTGAAATAGAA
CitationAulehla A, Johnson RL. Dynamic expression of lunatic fringe suggests a link between notch signaling and an autonomous cellular oscillator driving somite segmentation. Dev Biol. 1999 Mar 1;207(1):49-61.
CopyrightCopyright © 1999 Academic Press.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001005848.2). c-hairy1 is also known as HES4 in NCBI.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 14
stage 14
stage 15
Lateral Plate Mesoderm
Paraxial Mesoderm
Somites
 
31-44
stage 44
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.3754

Mouse

EmageMGI:104853
EurexpressMGI:104853
MGI GXDMGI:104853

Frog

Xenbase487994

Fruit Fly

BDGPFBgn0001168

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-980526-144
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