GEISHA - A Chicken Embryo Gene Expression Database
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TCF3
transcription factor 3

Gene
Official SymbolTCF3
Official Full Nametranscription factor 3
CGNC ID739
also known asG12, transcription factor E2-alpha|class A basic helix-loop-helix transcription factor G12|helix-loop-helix protein E12|helix-loop-helix protein E47|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47), transcription factor 3, TCF3, E2A immunoglobulin enhancer binding factors E12/E47
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Sequence Information
Genomic
RNANM_204486
PolypeptideNP_989817
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human6929ENSG00000071564MIM:147141MIM:147141
Mouse21423ENSMUSG00000020167All phenotypic alleles (22):Targeted, knock-out(7) Targeted, other(15) MGI:98510
Xenopus100101779, 379355478264
Zebrafish664768, 30310ENSDARG00000052383, ENSDARG00000005915ZDB-GENE-051113-64, ZDB-GENE-990415-51ZFIN:ZDB-GENE-051113-64, ZFIN:ZDB-GENE-990415-51
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395146
Ensembl GeneENSGALG00000001093
KEGGgga:395146

Entry 1

GEISHA IdTCF3.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerCCAGTCCGAGCACGCTTTCC
Reverse cDNA Template PrimerAATTAACCCTCACTAAAGGGCCGCTTTGGGGTTCAGATTGcDNA Template Length1474
Forward cDNA Template Probeshow
GGTAAGCGTGTATGCCCCTACTGCGCTCGGTTCGTATGACGAACGGCCTGGTGGAGGATTATCACCTTTGAGTCGTGTG
CGTTTGTTCCGCTGTTTGTAGGTGCGAGCTTGAGCACATTGCGTTCCGAGTCTCTTTAAAGGCCTCGTTGATGTCACGG
ACCCGCAGGCGCTCACGGGCATTATTGGCGACCCTCCTTTCTCTCTCTCTCTAGGCTTTTTGCTCTGGGGGAAGAACAT
CGTCCTCCTCATCCTCATCTTGACTTGTTCTATTCCGGGAGGGTTTCAGCTCCTTCTTCTCCTCTTCAGAGTTATCCGC
CACTGATGTGTTCTCCTCATCCTCCTTCTCTTCCCTCTTTATCGAGATGGTTCCCGAGGAGACGCTGCTTCGCCCCAGC
CCCCCTGACAAGCCACTGTACGTGTCCTGCTGCCTGTTGAGGTCGGGGAGTGAGCTGGGCTGTGACGGAAGTGTGACAT
GGTTGTGGAGCATGCTGGGGGTGCTGGACAGCCCCTCTTCAGGGTGACCTCCTCCCACCAGGCTGGGGTGCCGGCCCCC
CACGGACATGACGGACGCAGGGAAGGCCTGGCCCAAGCTGCCCACAGCAGCACTGTGTGCGGGTGCAGAGCCCACCAGC
CCATGCATGTCCCCGTGGTTGCTCGGCATGGCGGCCGTCTGGTCCACAGCGTGATTCCTCACCACGTGGAGGGCTTCAT
CCAACCTGTCTTCCATTTTGTTTTGCAAACTGAGGAGGCTCCCTTAGTAGCTGGGAGATAAGGCACCCTGTCCCCCCGC
TCGAGACCACTGGGGATGTGCCTGACAGGCCCTGCGGGGAGCCGACCCGCGTGAAAGGTTTTAAGAAAATTATTGCTAA
ATTGACTGGGGAAAAATTGAAAATAGGCCCTCCCAAAACGTCCCCGAGCTCCCACCGGGTTCCTTGTTACCCCCATGTG
TCGGCCCGCGATCCGGGTGTTTGGGGGGACCCCATGGGGGGAGCCAAAAAAACCTCCCCAAGGCCCCCCATTCCCCTCC
TAAGCCCGGGATTCTGCTTTTTCTATTAAACGTCACCGGGAAAGGAAAATGGAAAGAACCCCCCCAGGCCCTATTGGAG
GCTAGAACAGGAGCCCGGGTGGGTTTTGACCCCCCCAAAAAGCCCGGGACAGGGGGGTTTCGGGGTTCCCCACCCCCTT
TCCCCGTGGAGGACCGGGAGGTCACGCCCCCCACTTGCCCCCCCCCCCCCCCGGAAGGGAAAACCCCCCCCCGGGGGGG
GCGGAAANNNNNGTATAACTCTCTCCACACTAGGTCGTCTTTCCTTAAACCCCGTTAACTTTGCTATCCCTTGCTTTCC
CCTCCTCATTTCTACTTCTCTCCACCACTTCTCCTCCCTCTCCCCTCTTCTACCTACCCTTAGCATCTCCCGC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Area Pellucida
Primitive Streak
 
4-6
stage 4
stage 5
stage 6
Area Pellucida
Extraembryonic Mesoderm
Headfold
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
 
7-12
stage 7
stage 9
stage 12
Blood Islands
Blood Vessels
Extraembryonic Mesoderm
Head Mesenchyme
Headfold
Heart
Intermediate Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Somites
Widespread Expression
 
13-18
stage 17
stage 18
Eye
Limb Buds
Neural Plate/Tube
Pharyngeal Arches and Clefts
Somites
Spinal Cord
Widespread Expression
 
19-24
stage 23
Eye
Face Mesenchyme
Forebrain
Leg
Midbrain
Neural Plate/Tube
Pharyngeal Arches and Clefts
Somites
Spinal Cord
Widespread Expression
Wing
 
25
stage 25
Eye
Face Mesenchyme
Forebrain
Leg
Midbrain
Neural Plate/Tube
Pharyngeal Arches and Clefts
Somites
Spinal Cord
Widespread Expression
Wing
 

Entry 2

GEISHA IdE12.Gammill.2002Data SourcePublication
Complete cDNA Template Probeshow
ACGCGGGGACCTTCATGCGCGGCCGCCGCTCCTCCCCGCGCACACGCACCGCGGGCTCGGTTCGGCCCCGGAACAGGAC
TGCCACTGTTGAGTCTGTGGGAGTATGAATCAGCAGCAGCAGAGAATGGCTGCAGTTGGGACAGACAAAGAGCTCAGTG
ACCTGCTGGACTTCAGTATGATGTTTCCCCTGCCAGTGGCTAATGGAAAAAACAGACCCACGACCCTAGCAAGCACTCA
GTTTGGAGGATCAGGTTTGGATGAAAGACCGGGATCGGGTTCCTGGGGAACGGGAGATCAAAACAGCTCCACGTTTGAC
CAAGGAAGGCAGAGCTATGGTGAAGGCCCCCACTACGGCGAGCACCGGGACCTGCCGTCGCACAACAGCTTGTCTTCAT
CTCCATTCCTGGGACCTGGACTAGTGGGGAAGAGCGGTGAAAGAGCCTCGTACTCCACGTTCGGAAGGGACGCCGGGAT
GCCAGGACTGAGCCAGACTGGTTTCCTGCCCAGCGAGATGGGAATCGCCAGTCCGAGCACGCTTTCCCCCACAGGAGTG
AAGGGGGGGTCGCAGTATTTTTCTTACCCCAACAACCCTCGCAGGAGAGGTGCTGAGAGCAGCATAGCAGATGGACAGC
CCAAAAAGGTTCGGAAGGTGCCTCCTGGACTCCCCTCCTCGGTGTATCCATCCAACTCAGGTGATGACTACAGCAGGGA
TCCGGCTGGATACACCCCCTCGAAACCTCCCAGCACTGTGTACCCCGGAGCCTTCTATATGGCAGACGGGCTCCACAAC
TCGCCAGACCTGTGGAGCTCCCCTGGTGCCATGAGCCAGTCCAGCTACGGGGCCATGCTGGGCAGTTCCTCCTCCCCTC
TCCCGCAGTCCGCCAGCTTCAACAGTTTACATCAGCATGAACGCATGAACTACCAGCTGCATTCAGGAGAGTTGAATGG
TGGGCTGCCCTCCGTGTCAGGCTTCTCCTCTGCCTCCACCCCATACGGCGTCTCCAGCCACACACCGCCGATCAGCGGG
ACCGACACCATGATGGGTAACAGAGGAACCACGGCTGGGAGCTCGGGAGACGCTCTTGGGAAGGCACTAGCTTCAATTT
ATTCCCCAGATCACTCTAGCAATAACTTCTCATCAAACCCCTCCACGCCGGTCGGCTCCCCGCAGGGCCTTGCAGGCAC
ATCCCAGTGGTCTCGAGCGGGCGGACAGGGTGCCTTATCTCCCAGCTACGAAGGGAGCCTCCACACTTTACAAAACAAA
ATGGAAGACAGGTTGGACGAAGCCATCCACGTGCTGAGGAATCACGCCGTGGGCCAGACGGCCGCCATGCCGAGCAACC
ACGGGGACATGCATGGGCTGCTGGGCTCTGCACCCGCACACAGTGCTGCTGTGGGCAGCCTGGGCCAGGCCTTCCCTGC
CTCCGTCATGTCCCTGGGGGGCCGGCACCCCAGCCTGGTGGGAGGAGGTCACCCTGAAGACGGGCTGTCCAGCACCCCC
AGCATGCTCCACAACCATGTCACACTTCCGTCACAGCCCAGCTCACTCCCCGACCTCAACAGGCAGCAGGACACGTACA
GTGGCTTGTCAGGGGGGCTGGGGCGAAGCAGCGTCTCCTCGGGAACCAACGAGATAAAGAGGGAAGAGAAGGAGGATGA
GGAGAACACATCAGTGGCGGATAACTCTGAAGAAGAGAAGAAGGAGCTGAAACCCTCCCGGAATAGAACAAGTCAAGAT
GAGGATGAGGAGGACGATCTTCTTCCCCCAGAGCAAAAAGCCGAGAGAGAGAGAGAAAGGAGGGTCGCCAATAATGCCC
GTGAGCGCCTGCGGGTCCGTGACATCAACGAGGCCTTTAAAGAGCTCGGACGCATGTGCCAACTCCACCTAAACAGCGA
AAAACCACAGACCAAACTGCTAATCCTCCACCAGGCCGTATCAGTCATACTGAACCTGGAGCAGCAAGTTAGAGAGCGC
AATCTGAACCCCAAAGCGGCCTGCTTGAAGCGTCGGGAAGAGGAGAAAGTGTCCGGAGTGGTGGGAGACCCCCAGATGA
CGCTTTCAGCTTCTCATCCTGGTCTCGGAGACGGTCACAACCCCGTTGGACACATGTAAAGATCCTTTTGTTCCTCCGG
ATGCAGAGACCCGTAGGATGCAAACCCTCGCTGTGATCTGCGACCTTCCCGAACCATGAACTTTAGTCCTGCTCATACT
GACACACGTGGACGGATCCTGGCGTGACGTAAGGGGTGGAAATGAAACACTTTGTCTGAAACGAAAGCAAACAAAACAG
AAAATTGCCTTAAGTATAAAGCGCGGAACAGGTCAATACATATCACTTCAGTTAGGAAGGGGTGGCGTGTTTTTTTGGC
TTGTTCACAAGCAGCCAGCAGCAAAAATGTGCCTAAGCTTAATATTCCTCTTTTTTTTTTTATTTTAAACGGCGGCGAC
GAGGGGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
CitationGammill LS, Bronner-Fraser M. Genomic analysis of neural crest induction. Development. 2002 Dec;129(24):5731-41.
CopyrightPublished by The Company of Biologists 2002. This material is protected by a copyright retained by the authors. Permission granted by Dr. Bronner-Fraser.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (NM_204486.2).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
Neural Crest
Neural Plate/Tube
Paraxial Mesoderm
 

Entry 3

GEISHA IdTCF3.Quinlan.2009Data SourcePublication
Complete cDNA Template Probeshow
ACGCGGGGACCTTCATGCGCGGCCGCCGCTCCTCCCCGCGCACACGCACCGCGGGCTCGGTTCGGCCCCGGAACAGGAC
TGCCACTGTTGAGTCTGTGGGAGTATGAATCAGCAGCAGCAGAGAATGGCTGCAGTTGGGACAGACAAAGAGCTCAGTG
ACCTGCTGGACTTCAGTATGATGTTTCCCCTGCCAGTGGCTAATGGAAAAAACAGACCCACGACCCTAGCAAGCACTCA
GTTTGGAGGATCAGGTTTGGATGAAAGACCGGGATCGGGTTCCTGGGGAACGGGAGATCAAAACAGCTCCACGTTTGAC
CAAGGAAGGCAGAGCTATGGTGAAGGCCCCCACTACGGCGAGCACCGGGACCTGCCGTCGCACAACAGCTTGTCTTCAT
CTCCATTCCTGGGACCTGGACTAGTGGGGAAGAGCGGTGAAAGAGCCTCGTACTCCACGTTCGGAAGGGACGCCGGGAT
GCCAGGACTGAGCCAGACTGGTTTCCTGCCCAGCGAGATGGGAATCGCCAGTCCGAGCACGCTTTCCCCCACAGGAGTG
AAGGGGGGGTCGCAGTATTTTTCTTACCCCAACAACCCTCGCAGGAGAGGTGCTGAGAGCAGCATAGCAGATGGACAGC
CCAAAAAGGTTCGGAAGGTGCCTCCTGGACTCCCCTCCTCGGTGTATCCATCCAACTCAGGTGATGACTACAGCAGGGA
TCCGGCTGGATACACCCCCTCGAAACCTCCCAGCACTGTGTACCCCGGAGCCTTCTATATGGCAGACGGGCTCCACAAC
TCGCCAGACCTGTGGAGCTCCCCTGGTGCCATGAGCCAGTCCAGCTACGGGGCCATGCTGGGCAGTTCCTCCTCCCCTC
TCCCGCAGTCCGCCAGCTTCAACAGTTTACATCAGCATGAACGCATGAACTACCAGCTGCATTCAGGAGAGTTGAATGG
TGGGCTGCCCTCCGTGTCAGGCTTCTCCTCTGCCTCCACCCCATACGGCGTCTCCAGCCACACACCGCCGATCAGCGGG
ACCGACACCATGATGGGTAACAGAGGAACCACGGCTGGGAGCTCGGGAGACGCTCTTGGGAAGGCACTAGCTTCAATTT
ATTCCCCAGATCACTCTAGCAATAACTTCTCATCAAACCCCTCCACGCCGGTCGGCTCCCCGCAGGGCCTTGCAGGCAC
ATCCCAGTGGTCTCGAGCGGGCGGACAGGGTGCCTTATCTCCCAGCTACGAAGGGAGCCTCCACACTTTACAAAACAAA
ATGGAAGACAGGTTGGACGAAGCCATCCACGTGCTGAGGAATCACGCCGTGGGCCAGACGGCCGCCATGCCGAGCAACC
ACGGGGACATGCATGGGCTGCTGGGCTCTGCACCCGCACACAGTGCTGCTGTGGGCAGCCTGGGCCAGGCCTTCCCTGC
CTCCGTCATGTCCCTGGGGGGCCGGCACCCCAGCCTGGTGGGAGGAGGTCACCCTGAAGACGGGCTGTCCAGCACCCCC
AGCATGCTCCACAACCATGTCACACTTCCGTCACAGCCCAGCTCACTCCCCGACCTCAACAGGCAGCAGGACACGTACA
GTGGCTTGTCAGGGGGGCTGGGGCGAAGCAGCGTCTCCTCGGGAACCAACGAGATAAAGAGGGAAGAGAAGGAGGATGA
GGAGAACACATCAGTGGCGGATAACTCTGAAGAAGAGAAGAAGGAGCTGAAACCCTCCCGGAATAGAACAAGTCAAGAT
GAGGATGAGGAGGACGATCTTCTTCCCCCAGAGCAAAAAGCCGAGAGAGAGAGAGAAAGGAGGGTCGCCAATAATGCCC
GTGAGCGCCTGCGGGTCCGTGACATCAACGAGGCCTTTAAAGAGCTCGGACGCATGTGCCAACTCCACCTAAACAGCGA
AAAACCACAGACCAAACTGCTAATCCTCCACCAGGCCGTATCAGTCATACTGAACCTGGAGCAGCAAGTTAGAGAGCGC
AATCTGAACCCCAAAGCGGCCTGCTTGAAGCGTCGGGAAGAGGAGAAAGTGTCCGGAGTGGTGGGAGACCCCCAGATGA
CGCTTTCAGCTTCTCATCCTGGTCTCGGAGACGGTCACAACCCCGTTGGACACATGTAAAGATCCTTTTGTTCCTCCGG
ATGCAGAGACCCGTAGGATGCAAACCCTCGCTGTGATCTGCGACCTTCCCGAACCATGAACTTTAGTCCTGCTCATACT
GACACACGTGGACGGATCCTGGCGTGACGTAAGGGGTGGAAATGAAACACTTTGTCTGAAACGAAAGCAAACAAAACAG
AAAATTGCCTTAAGTATAAAGCGCGGAACAGGTCAATACATATCACTTCAGTTAGGAAGGGGTGGCGTGTTTTTTTGGC
TTGTTCACAAGCAGCCAGCAGCAAAAATGTGCCTAAGCTTAATATTCCTCTTTTTTTTTTTATTTTAAACGGCGGCGAC
GAGGGGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
CitationQuinlan R, Graf M, Mason I, Lumsden A, Kiecker C. Complex and dynamic patterns of Wnt pathway gene expression in the developing chick forebrain. Neural Dev. 2009 Sep 4;4:35.
CopyrightCopyright © 2009 Quinlan et al; licensee BioMed Central Ltd. [This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.]
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc# NM_204486.2).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 1
  
13-18
stage 13
stage 16
stage 16
Diencephalon
Forebrain
Hindbrain
Midbrain
 
19
stage 19
Forebrain
Hindbrain
Midbrain
 

Mouse

EmageMGI:98510
MGI GXDMGI:98510

Frog

Xenbase478264

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-051113-64, ZDB-GENE-990415-51
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