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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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SLC1A3
solute carrier family 1 member 3

The human orthologue of this gene is associated
with the following human disease:

Episodic ataxia, type 6

Gene

Official Symbol	SLC1A3
Official Full Name	solute carrier family 1 member 3
CGNC ID	2616
also known as	excitatory amino acid transporter 1\|Na+-dependent glutamate/aspartate transporter\|solute carrier family 1 (glial high affinity glutamate transporter), member 3
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_425011
Polypeptide	XP_425011
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.49289

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	34251			FBgn0026439
Human	6507	ENSG00000079215	MIM:612656	MIM:600111
Mouse	20512	ENSMUSG00000005360	All phenotypic alleles (7):Targeted, knock-out(3) Targeted, other(3) Gene trapped(1)	MGI:99917
Xenopus	100127700, 398856			975312
Zebrafish	100334080, 556181, 323439	ENSDARG00000043148, ENSDARG00000026218	ZDB-GENE-090708-3, ZDB-GENE-030131-2159	ZFIN:ZDB-GENE-090708-3, ZFIN:ZDB-GENE-030131-2159

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	395443
Ensembl Gene	ENSGALG00000003582
KEGG	gga:395443

Entry 1

GEISHA Id	SLC1A3.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5’-TCTCCAGTGAAGCCCCTTCT-3’
Reverse cDNA Template Primer	5’-AATTAACCCTCACTAAAGGGGGCTGAGCAAGGGAATCTT-3’	cDNA Template Length	876
Complete cDNA Template Probe	show TCTCCAGTGAAGCCCCTTCTTAGAAATATTAATTATATATGTTCTTCTTTTAACTTTTATTGTTGTAGAGGTTAAACTG GAAAGTTTTATAATACAGCTACAGTTAGGGAAATGAAGAAATATTAATCAGAAGGCAGAGTAATATTGAGTGATTGTTT TTATTTAAATGTTCATTTTTCTTCTTTCTTCCTTGCCCAACAAAATAAAATCTGACTATATGAATGAAGGATTCCCTTG TAATGCCCCAAGTGCAACACAAAAAATATTCAGTATGCTGCTTTTGTCTTTAAGAGAACATAAATGTGGTGTATTTCAC CGTAATGAAAATGTCAACATCCTGATAGAAGGTAAATTTTTTCCCATGTTTAGAGCAACAAGGCAAGACTGTTTTGTTT AGGACTGAAAACTCCTGCCCATCTTCTCCAGTTGATTAGTCCAGACAGTAGGAGCAGGAACTCTTCAGTGATTGAAGTG AGCAGGGTTTAACTCAGAGCATTGAGTGGTCAAACCTACAAAGCTCTTGTATTAATCTCTCACTGAAAGAAAGCAAGTG TGACTTTTACGTTTTTGCTAACAGAATGCAAATCTAGGATATAGATAGACATTTTCTGATATGTGTAATTAGAGATATT TTTATATAGATACTGTATTCAAAATGTGTGTATAAATTTTAACTGTAGAATGTACAGCATAACGATTTAATTTTTGTTA AGATTCTGTTTGGAAATACATTGCAAAGACATAATGTAAATGGCTGTCTTCCTATGACATCAGCTGAGAAAAATGAATT GTTTCACAAAATATGCGATCTTTTTTTATACTAACTTTGTTTCTTATGGAAATCAGGTATTATAGAAAGATTCCCTTGC TCAGCCC

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 11

Unlabeled

13-18

stage 17

Unlabeled

19-24

stage 19

stage 23

Head Mesenchyme
Sclerotome
Unlabeled

25-26

stage 26

Head Mesenchyme
Lung
Pharyngeal Arches and Clefts
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves

Entry 2

GEISHA Id	GLAST/SLC1A3.Domowicz.2008	Data Source	Publication
Complete cDNA Template Probe	show CAGGCCTTAAAAGACTTCTTTGATAGCCTTAATGAGGCTATCATGAGACTGGTAGCTCTAATCATGTGGTATGCTCCAC TTGGAATCCTCTTTCTGATTGCTGGAAAAATTGTTGAGATGGAAGATATGGGTGTGATTGGTGGTCAGCTTGCCATGTA TACTGTAACAGTTATAATCGGTTTGCTTATTCACGCTGTCATAGTCCTACCTCTGCTGTACTTCCTAATCACTCGTAAG AACCCTTGGGTATTTATTGGAGGCCTAATCCAGGCTCTGGTCACAGCTTTGGGAACATCTTCCAGTTCTGCAACACTGC CTGTTACATTTAAGTGTCTAGAAGAAATAAATGGAGTGGACAAACGAGTTACAAGATTTGTACTGCCAGTTGGTGCTAC CATTAATATGGATGGAACTGCATTATATGAGGCTTTGGCTGCAATTTTCATTGCACAGGTTAACAACTTTGATCTGAAC TTTGGGCAGATTATCACAATCAGCATCACAGCTACAGCTGCCAGTATTGGGGCTGCGGGCATTCCTCAAGCTGGGCTGG TCACCATGGTCATTGTGCTTACATCAGTAGGTTTGCCTACGGATGATATCACTCTTATCATTGCAGTGGACTGGTTCTT GGATCGTCTCCGTACCACTACCAATGTCTTGGGAGACTCCATTGGAGCAGGGATTGTTGAACACTTATCACGGCATGAG CTGAAGAACAGGGATGCCGAGATGGGGAATTCTGTGATAGAGGAGAATGAAATGAAGAAACC
Citation	Domowicz MS, Sanders TA, Ragsdale CW, Schwartz NB. Aggrecan is expressed by embryonic brain glia and regulates astrocyte development. Dev Biol. 2008 Mar 1;315(1):114-24. Epub 2008 Jan 22.
Copyright	Copyright © 2008 Published by Elsevier Inc.
Comments	Specific probe sequence used: nt 10531765 of NCBI accession number XM425011.

Stage

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Location (click to highlight)

Comments (click to highlight)

31-34

stage 34

Hindbrain

Entry 3

GEISHA Id	GLAST.Domowicz.2011	Data Source	Publication
Complete cDNA Template Probe	show ATCATGTGGTATGCTCCACTTGGAATCCTCTTTCTGATTGCTGGAAAAATTGTTGAGATGGAAGATATGGGTGTGATTG GTGGTCAGCTTGCCATGTATACTGTAACAGTTATAATCGGTTTGCTTATTCACGCTGTCATAGTCCTACCTCTGCTGTA CTTCCTAATCACTCGTAAGAACCCTTGGGTATTTATTGGAGGCCTAATCCAGGCTCTGGTCACAGCTTTGGGAACATCT TCCAGTTCTGCAACACTGCCTGTTACATTTAAGTGTCTAGAAGAAATAAATGGAGTGGACAAACGAGTTACAAGATTTG TACTGCCAGTTGGTGCTACCATTAATATGGATGGAACTGCATTATATGAGGCTTTGGCTGCAATTTTCATTGCACAGGT TAACAACTTTGATCTGAACTTTGGGCAGATTATCACAATCAGCATCACAGCTACAGCTGCCAGTATTGGGGCTGCGGGC ATTCCTCAAGCTGGGCTGGTCACCATGGTCATTGTGCTTACATCAGTAGGTTTGCCTACGGATGATATCACTCTTATCA TTGCAGTGGACTGGTTCTTGGATCGTCTCCGTACCACTACCAATGTCTTGGGAGACTCCATTGGAGCAGGGATTGTTGA ACACTTATCACGGCATGAGCTGAAGAACAGGGATGCCGAGATGGGGAATTCTGTGATAGAGGAGAATGAAATGAAGAAA C
Citation	Domowicz MS, Henry JG, Wadlington N, Navarro A, Kraig RP, Schwartz NB. Astrocyte precursor response to embryonic brain injury. Brain Res. 2011 May 10;1389:35-49. Epub 2011 Mar 9.
Copyright	Copyright © 2011, Elsevier
Comments	Template sequence taken from Domowicz, 2008. Nt10531765 were used from clone acc# XM_425011.2.