GEISHA - A Chicken Embryo Gene Expression Database
Browse By
- Anatomical Location
- Stage
- Gene Name
- GEISHA ID
- Multiple Parameters
Search
- Quick Search
Data Class
Enter Text:
go
- Gene Family QuickSearch
Transcription Factors
Growth Factors
Receptors
MicroRNAs
- Human Disease Gene Search
Documents
- Downloads
- Protocols
- About GEISHA
- Contact Us
Resources
- Transgenic Birds
- Model Organism Databases
- Gene Expression Databases
- Genomic Resources
- Anatomical Atlases
- Chicken Stage Series
_

SOX8
SRY-box 8

Gene
Official SymbolSOX8
Official Full NameSRY-box 8
CGNC ID49341
also known astranscription factor SOX-8|SOX8 transcription factor|SRY (sex determining region Y)-box 8, Transcription factor SOX-8
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204731
PolypeptideNP_990062
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.4309
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human30812ENSG00000005513MIM:605923
Mouse20681ENSMUSG00000024176All phenotypic alleles (4):Targeted, knock-out(1) Targeted, other(3) MGI:98370
Xenopus100497725, 399214480864
Zebrafish386704, 102216265ENSDARG00000037782ZDB-GENE-031114-1, ZDB-GENE-130530-719ZFIN:ZDB-GENE-031114-1, ZFIN:ZDB-GENE-130530-719
Gene Ontology
Molecular FunctionDNA binding
Biological Processheart valve development, oligodendrocyte differentiation, regulation of transcription, DNA-templated, more...transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene395483
Ensembl GeneENSGALG00000005263
KEGGgga:395483

Entry 1

GEISHA Idpgm2n.pk009.c2Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GGAATTCTATTTGGCAAAGGGATGAAAAGTGGCATTTTAAATGGGATGGGGGGGATGTCTCGTCCGCTTGTCAATATTG
GTAAGGATGTGCTTTTTTTCTGCCTCTATAACTGATATTTTAACACGTTTTTGCAGTAGGCTTTTGTTTTTTTGGTGCT
ACGGCAAATTTGTATTGAACTCTTTGGTCAGTGCAGTGGGGATGTGAGTTGGAAAATAAACTGAAAACTTCCAGGGAAA
AGACATTAATTTTGGATTTTTCTTTTTCCTCTTTTTTTTTTTTTTTTTTTAAATCCATCCCAAACCAGTTTGTTAAGCG
AAAATGAGAAACGTCCCTTTGTGGAAGAAGCTGAGCGGCTCAGGGTCCAGCACAAAAAGGATCACCCGGATTATAAATA
CCAGCCCCGGAGGAGGAAAAGCGTGAAAGCTGGGCAGAGCGACTCCGACTCCGGGGCCGAGCTCAGCCATCACGCCGGC
ACCCAGATCTACAAGGCTGACAGCGGGCTGGGGGGCATGGCTGATGGCCACCACCACGGCGAGCATGCAGGTAAAGGGT
CCTGGGGGCTGAGAACTGCTCATTGTGGGGGTGTTGTTTTGTGACTCGAACCCACCAGTGGGCACAGGCATGTCTGCAC
GCTCAAAGCCTGTGCAGCGTGGGACTGGGGGGCAGCCAAAAGCAGAGCCATTGCTCTAAGAGCTGAGGTTTTGCATCGG
GTGGTGTGCGTGGCCATGCATTTAGTTAATAAATGCAACCAGAAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 9
stage 10
Neural Crest
 
13-18
stage 13
Ear/Otic Placcode
Face Mesenchyme
otic placcode
19-24
stage 19
stage 21
stage 21
stage 23
Ear/Otic Placcode
Face Mesenchyme
Lateral Plate Mesoderm
Limb Buds
Myotome
Nasal Placcode/Nerve
Pharyngeal Arches and Clefts
Somites
Spinal Ganglia and Nerves
Stomach
Wing Ectoderm
Wing Mesenchyme
 
25
stage 25
stage 25
Forebrain
Leg Bones
Leg Mesenchyme
Midbrain
 

Entry 2

GEISHA IdSox8.McKeown.2005Data SourcePublication
Complete cDNA Template Probeshow
ATGCTCAACATGACCGAGGAGCACGACAAAGCGCTGGAGGCTCCGTGCAGCCCCGCGGGCACCACCAGCTCCATGTCCC
ACGTGGACTCGGACTCCGACTCCCCGCTGTCCCCCGCCGGCTCCGAGGGCCTGGGCTGCGCCCCCGCGCCCGCCCCGCG
CCCCCCCGGTGCCGCCCCGCTGGGCGCTAAGGTGGATGCGGCCGAGGTGGACGAGCGCTTCCCCGCCTGCATCCGCGAC
GCCGTCTCGCAGGTGCTGAAGGGCTACGACTGGAGCCTGGTGCCCATGCCCGTGCGCGGCAACGGGTCGCTCAAGGCGA
AGCCGCACGTCAAGCGGCCCATGAACGCCTTCATGGTGTGGGCGCAGGCCGCCCGCAGGAAGCTGGCCGACCAATACCC
GCACCTGCACAACGCCGAGCTCAGCAAGACGCTGGGCAAGCTCTGGCGTTTGTTAAGCGAAAATGAGAAACGTCCCTTT
GTGGAAGAAGCTGAGCGGCTCAGGGTCCAGCACAAAAAGGATCACCCGGATTATAAATACCAGCCCCGGAGGAGGAAAA
GCGTGAAAGCTGGGCAGAGCGACTCCGACTCCGGGGCCGAGCTCAGCCATCATGCCGGCACCCAGATCTACAAGGCTGA
CAGCGGGCTGGGGGGCATGGCTGATGGCCACCACCACGGCGAGCATGCAGGCCAGCCCCATGGGCCGCCCACGCCGCCC
ACGACCCCCAAAACTGACCTGCACCACGGCAGCAAGCAGGAGCTGAAGCATGAGGGCCGCCGCCTCGTGGAGAGCGGCC
GCCAGAACATTGACTTCAGCAACGTGGACATTTCAGAGCTGAGCAGCGAGGTCATCAACAACATGGAGACCTTCGATGT
GCACGAGTTTGACCAGTACCTGCCGCTCAATGGCCATACTGCCATGCCGGCTGACCACGGCCCCGGTGCTGGCTTCTAC
AGCACGTCCTACTCCCACTCGGCAGCAGGCGCCGGCGGGGCTGGCCAGGTGTGGACTCACAAGAGCCCGGCCTCGGCAT
CGCCGTCATCGGCTGATTCGGGCCAGCAAAGGCCGCACATCAAAACGGAGCAGCTGAGCCCCAGCCACTACAGCGACCA
GTCCCACGGCTCCCCTGCGCACTCTGACTACGGCTCCTACAGCACCCAGGCCTGTGCCACCACTGCCTCCACCGCCACA
GCTGCCGCCTCCTTCTCCAGCTCCCAGTGCGACTACACGGACCTGCAGAGCTCCAACTACTACAACCCCTATCCCGGTT
ACCCCTCCAGCATCTACCAGTACCCCTACTTCCACTCCTCACGGCGTCCCTACGCGACGCCCATCCTCAACGGCTTGTC
CATCCCGCCGGCCCACAGCCCCACCGCTAACTGGGACCAGCCGGTCTACACAACCCTGACGAGGCCTTAAAAAGGATGC
GTGGAGCCTCCCCCAGGGCTTCCCCGACGTATGCACTAATGAAGGAACGAAGAGGAAGAACGTGGAGTGCCGCGATTGT
TTCCCAAGTGCCTCCTGAGCCGCTGGGAACTCTGCTCGTTGCGACTGGGTGTCCCCTTGCTTTGAAACTCTCCAAAAGG
ACAGAGCTCTATTTTTCTTTAATTAATAAAATT
CitationMcKeown S, Lee V, Bronner-Fraser M, Newgreen D, Farlie P. Sox10 Overexpression Induces Neural Crest-Like Cells From All Dorsoventral Levels of the Neural Tube but Inhibits Differentiation. Dev Dyn. 2005 Jun;233(2):430-44.
CopyrightCopyright © 2005 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # AF228664).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
Neural Crest
 
13-18
stage 18
Limb Buds
Neural Crest
 

Entry 3

GEISHA IdSox8.Bell.2000Data SourcePublication
Complete cDNA Template Probeshow
GAGCTCCAACTACTACAACCCCTATCCCGGTTACCCCTCCAGCATCTACCAGTACCCCTACTTCCACTCCTCACGGCGT
CCCTACGCGACGCCCATCCTCAACGGCTTGTCCATCCCGCCGGCCCACAGCCCCACCGCTAACTGGGACCAGCCGGTCT
ACACAACCCTGACGAGGCCTTAAAAAGGATGCGTGGAGCCCCCCCCAGGGCTTCCCCGACGTATGCACTAATGAAGGAA
CGAAGAGGAAGAACGTGGAGTGCCGCGATTGTTTCCCAAGTGCCTCCTGAGCCGCTGGGAACTCTGCTCGTTGCGACTG
GGTGTCCCCTTGCTTTGAAACTCTCCAAAAGGACAGAGCTCTATTTTTCTTTAATTAATAAAATT
CitationBell KM, Western PS, Sinclair AH. SOX8 expression during chick embryogenesis. Mech Dev. 2000 Jun;94(1-2):257-60.
CopyrightCopyright © 2000 Elsevier Science Ireland Ltd. All rights reserved.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 11
Unlabeled
 
19-24
stage 20
stage 21
stage 24
stage 24
stage 24
Dermatome
Face Mesenchyme
Limb Buds
Myotome
Somites
Spinal Ganglia and Nerves
Tail
Wing Mesenchyme
 
25-30
stage 27
stage 27
stage 27
Dermatome
Limb Buds
Myotome
Spinal Cord
Spinal Ganglia and Nerves
 
31-32
stage 31
stage 31
stage 31
stage 32
stage 32
stage 32
Duodenum
Epicardium
Heart
Leg
Limb Buds
Pancreas
 

Entry 4

GEISHA IdSox8.Chimal-Monroy.2003Data SourcePublication
Complete cDNA Template Probeshow
ATGCTCAACATGACCGAGGAGCACGACAAAGCGCTGGAGGCTCCGTGCAGCCCCGCGGGCACCACCAGCTCCATGTCCC
ACGTGGACTCGGACTCCGACTCCCCGCTGTCCCCCGCCGGCTCCGAGGGCCTGGGCTGCGCCCCCGCGCCCGCCCCGCG
CCCCCCCGGTGCCGCCCCGCTGGGCGCTAAGGTGGATGCGGCCGAGGTGGACGAGCGCTTCCCCGCCTGCATCCGCGAC
GCCGTCTCGCAGGTGCTGAAGGGCTACGACTGGAGCCTGGTGCCCATGCCCGTGCGCGGCAACGGGTCGCTCAAGGCGA
AGCCGCACGTCAAGCGGCCCATGAACGCCTTCATGGTGTGGGCGCAGGCCGCCCGCAGGAAGCTGGCCGACCAATACCC
GCACCTGCACAACGCCGAGCTCAGCAAGACGCTGGGCAAGCTCTGGCGTTTGTTAAGCGAAAATGAGAAACGTCCCTTT
GTGGAAGAAGCTGAGCGGCTCAGGGTCCAGCACAAAAAGGATCACCCGGATTATAAATACCAGCCCCGGAGGAGGAAAA
GCGTGAAAGCTGGGCAGAGCGACTCCGACTCCGGGGCCGAGCTCAGCCATCATGCCGGCACCCAGATCTACAAGGCTGA
CAGCGGGCTGGGGGGCATGGCTGATGGCCACCACCACGGCGAGCATGCAGGCCAGCCCCATGGGCCGCCCACGCCGCCC
ACGACCCCCAAAACTGACCTGCACCACGGCAGCAAGCAGGAGCTGAAGCATGAGGGCCGCCGCCTCGTGGAGAGCGGCC
GCCAGAACATTGACTTCAGCAACGTGGACATTTCAGAGCTGAGCAGCGAGGTCATCAACAACATGGAGACCTTCGATGT
GCACGAGTTTGACCAGTACCTGCCGCTCAATGGCCATACTGCCATGCCGGCTGACCACGGCCCCGGTGCTGGCTTCTAC
AGCACGTCCTACTCCCACTCGGCAGCAGGCGCCGGCGGGGCTGGCCAGGTGTGGACTCACAAGAGCCCGGCCTCGGCAT
CGCCGTCATCGGCTGATTCGGGCCAGCAAAGGCCGCACATCAAAACGGAGCAGCTGAGCCCCAGCCACTACAGCGACCA
GTCCCACGGCTCCCCTGCGCACTCTGACTACGGCTCCTACAGCACCCAGGCCTGTGCCACCACTGCCTCCACCGCCACA
GCTGCCGCCTCCTTCTCCAGCTCCCAGTGCGACTACACGGACCTGCAGAGCTCCAACTACTACAACCCCTATCCCGGTT
ACCCCTCCAGCATCTACCAGTACCCCTACTTCCACTCCTCACGGCGTCCCTACGCGACGCCCATCCTCAACGGCTTGTC
CATCCCGCCGGCCCACAGCCCCACCGCTAACTGGGACCAGCCGGTCTACACAACCCTGACGAGGCCTTAAAAAGGATGC
GTGGAGCCTCCCCCAGGGCTTCCCCGACGTATGCACTAATGAAGGAACGAAGAGGAAGAACGTGGAGTGCCGCGATTGT
TTCCCAAGTGCCTCCTGAGCCGCTGGGAACTCTGCTCGTTGCGACTGGGTGTCCCCTTGCTTTGAAACTCTCCAAAAGG
ACAGAGCTCTATTTTTCTTTAATTAATAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
CitationChimal-Monroy J, Rodriguez-Leon J, Montero JA, Gañan Y, Macias D, Merino R, Hurle JM. Analysis of the molecular cascade responsible for mesodermal limb chondrogenesis: Sox genes and BMP signaling. Dev Biol. 2003 May 15;257(2):292-301.
CopyrightReprinted with permission from Elsevier. Copyright © 2003 Elsevier B.V. All rights reserved.
Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204731.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 22
stage 24
Leg Mesenchyme
 
25-30
stage 26
Leg Mesenchyme
 
31
stage 31
Leg Bones
 

Entry 5

GEISHA IdSOX8.Betancur.2011Data SourcePublication
Complete cDNA Template Probeshow
ATGCTCAACATGACCGAGGAGCACGACAAAGCGCTGGAGGCTCCGTGCAGCCCCGCGGGCACCACCAGCTCCATGTCCC
ACGTGGACTCGGACTCCGACTCCCCGCTGTCCCCCGCCGGCTCCGAGGGCCTGGGCTGCGCCCCCGCGCCCGCCCCGCG
CCCCCCCGGTGCCGCCCCGCTGGGCGCTAAGGTGGATGCGGCCGAGGTGGACGAGCGCTTCCCCGCCTGCATCCGCGAC
GCCGTCTCGCAGGTGCTGAAGGGCTACGACTGGAGCCTGGTGCCCATGCCCGTGCGCGGCAACGGGTCGCTCAAGGCGA
AGCCGCACGTCAAGCGGCCCATGAACGCCTTCATGGTGTGGGCGCAGGCCGCCCGCAGGAAGCTGGCCGACCAATACCC
GCACCTGCACAACGCCGAGCTCAGCAAGACGCTGGGCAAGCTCTGGCGTTTGTTAAGCGAAAATGAGAAACGTCCCTTT
GTGGAAGAAGCTGAGCGGCTCAGGGTCCAGCACAAAAAGGATCACCCGGATTATAAATACCAGCCCCGGAGGAGGAAAA
GCGTGAAAGCTGGGCAGAGCGACTCCGACTCCGGGGCCGAGCTCAGCCATCATGCCGGCACCCAGATCTACAAGGCTGA
CAGCGGGCTGGGGGGCATGGCTGATGGCCACCACCACGGCGAGCATGCAGGCCAGCCCCATGGGCCGCCCACGCCGCCC
ACGACCCCCAAAACTGACCTGCACCACGGCAGCAAGCAGGAGCTGAAGCATGAGGGCCGCCGCCTCGTGGAGAGCGGCC
GCCAGAACATTGACTTCAGCAACGTGGACATTTCAGAGCTGAGCAGCGAGGTCATCAACAACATGGAGACCTTCGATGT
GCACGAGTTTGACCAGTACCTGCCGCTCAATGGCCATACTGCCATGCCGGCTGACCACGGCCCCGGTGCTGGCTTCTAC
AGCACGTCCTACTCCCACTCGGCAGCAGGCGCCGGCGGGGCTGGCCAGGTGTGGACTCACAAGAGCCCGGCCTCGGCAT
CGCCGTCATCGGCTGATTCGGGCCAGCAAAGGCCGCACATCAAAACGGAGCAGCTGAGCCCCAGCCACTACAGCGACCA
GTCCCACGGCTCCCCTGCGCACTCTGACTACGGCTCCTACAGCACCCAGGCCTGTGCCACCACTGCCTCCACCGCCACA
GCTGCCGCCTCCTTCTCCAGCTCCCAGTGCGACTACACGGACCTGCAGAGCTCCAACTACTACAACCCCTATCCCGGTT
ACCCCTCCAGCATCTACCAGTACCCCTACTTCCACTCCTCACGGCGTCCCTACGCGACGCCCATCCTCAACGGCTTGTC
CATCCCGCCGGCCCACAGCCCCACCGCTAACTGGGACCAGCCGGTCTACACAACCCTGACGAGGCCTTAAAAAGGATGC
GTGGAGCCTCCCCCAGGGCTTCCCCGACGTATGCACTAATGAAGGAACGAAGAGGAAGAACGTGGAGTGCCGCGATTGT
TTCCCAAGTGCCTCCTGAGCCGCTGGGAACTCTGCTCGTTGCGACTGGGTGTCCCCTTGCTTTGAAACTCTCCAAAAGG
ACAGAGCTCTATTTTTCTTTAATTAATAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
CitationBetancur P, Sauka-Spengler T, Bronner M. A Sox10 enhancer element common to the otic placode and neural crest is activated by tissue-specific paralogs. Development. 2011 Sep;138(17):3689-98.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204731.1).
no images

Entry 6

GEISHA IdSox8.Betancur.2011Data SourcePublication
Complete cDNA Template Probeshow
ATGCTCAACATGACCGAGGAGCACGACAAAGCGCTGGAGGCTCCGTGCAGCCCCGCGGGCACCACCAGCTCCATGTCCC
ACGTGGACTCGGACTCCGACTCCCCGCTGTCCCCCGCCGGCTCCGAGGGCCTGGGCTGCGCCCCCGCGCCCGCCCCGCG
CCCCCCCGGTGCCGCCCCGCTGGGCGCTAAGGTGGATGCGGCCGAGGTGGACGAGCGCTTCCCCGCCTGCATCCGCGAC
GCCGTCTCGCAGGTGCTGAAGGGCTACGACTGGAGCCTGGTGCCCATGCCCGTGCGCGGCAACGGGTCGCTCAAGGCGA
AGCCGCACGTCAAGCGGCCCATGAACGCCTTCATGGTGTGGGCGCAGGCCGCCCGCAGGAAGCTGGCCGACCAATACCC
GCACCTGCACAACGCCGAGCTCAGCAAGACGCTGGGCAAGCTCTGGCGTTTGTTAAGCGAAAATGAGAAACGTCCCTTT
GTGGAAGAAGCTGAGCGGCTCAGGGTCCAGCACAAAAAGGATCACCCGGATTATAAATACCAGCCCCGGAGGAGGAAAA
GCGTGAAAGCTGGGCAGAGCGACTCCGACTCCGGGGCCGAGCTCAGCCATCATGCCGGCACCCAGATCTACAAGGCTGA
CAGCGGGCTGGGGGGCATGGCTGATGGCCACCACCACGGCGAGCATGCAGGCCAGCCCCATGGGCCGCCCACGCCGCCC
ACGACCCCCAAAACTGACCTGCACCACGGCAGCAAGCAGGAGCTGAAGCATGAGGGCCGCCGCCTCGTGGAGAGCGGCC
GCCAGAACATTGACTTCAGCAACGTGGACATTTCAGAGCTGAGCAGCGAGGTCATCAACAACATGGAGACCTTCGATGT
GCACGAGTTTGACCAGTACCTGCCGCTCAATGGCCATACTGCCATGCCGGCTGACCACGGCCCCGGTGCTGGCTTCTAC
AGCACGTCCTACTCCCACTCGGCAGCAGGCGCCGGCGGGGCTGGCCAGGTGTGGACTCACAAGAGCCCGGCCTCGGCAT
CGCCGTCATCGGCTGATTCGGGCCAGCAAAGGCCGCACATCAAAACGGAGCAGCTGAGCCCCAGCCACTACAGCGACCA
GTCCCACGGCTCCCCTGCGCACTCTGACTACGGCTCCTACAGCACCCAGGCCTGTGCCACCACTGCCTCCACCGCCACA
GCTGCCGCCTCCTTCTCCAGCTCCCAGTGCGACTACACGGACCTGCAGAGCTCCAACTACTACAACCCCTATCCCGGTT
ACCCCTCCAGCATCTACCAGTACCCCTACTTCCACTCCTCACGGCGTCCCTACGCGACGCCCATCCTCAACGGCTTGTC
CATCCCGCCGGCCCACAGCCCCACCGCTAACTGGGACCAGCCGGTCTACACAACCCTGACGAGGCCTTAAAAAGGATGC
GTGGAGCCTCCCCCAGGGCTTCCCCGACGTATGCACTAATGAAGGAACGAAGAGGAAGAACGTGGAGTGCCGCGATTGT
TTCCCAAGTGCCTCCTGAGCCGCTGGGAACTCTGCTCGTTGCGACTGGGTGTCCCCTTGCTTTGAAACTCTCCAAAAGG
ACAGAGCTCTATTTTTCTTTAATTAATAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
CitationBetancur P, Sauka-Spengler T, Bronner M. A Sox10 enhancer element common to the otic placode and neural crest is activated by tissue-specific paralogs. Development. 2011 Sep;138(17):3689-98.
Copyright© 2011. Published by The Company of Biologists Ltd
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_204731.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 8
stage 9
stage 11
Ear/Otic Placode
Neural Crest
Neural Plate/Tube
 
31-44
stage 44
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.4309

Mouse

EmageMGI:98370
EurexpressMGI:98370
MGI GXDMGI:98370

Frog

Xenbase480864

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-031114-1, ZDB-GENE-130530-719
Home | Contact
     
© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona