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A chicken embryo gene expression database

	Anatomical Location
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	GEISHA ID
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COL4A1
collagen type IV alpha 1 chain

The human orthologue of this gene is associated
with the following human diseases:

Gene

Official Symbol	COL4A1
Official Full Name	collagen type IV alpha 1 chain
CGNC ID	12637
also known as	collagen alpha-1(IV) chain\|collagen IV a1 chain\|collagen, type IV, alpha 1
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_001162399
Polypeptide	NP_001155871

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	1282	ENSG00000187498	MIM:611773	MIM:120130
Mouse	12826	ENSMUSG00000031502	All phenotypic alleles (15):Chemically induced(11) Radiation induced(2) Targeted, knock-out(1) Targeted, other(1)	MGI:88454
Xenopus	100124870, 373764			6451484
Zebrafish	554269	ENSDARG00000055009	ZDB-GENE-081105-114	ZFIN:ZDB-GENE-081105-114

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	395530
Ensembl Gene	ENSGALG00000016841
KEGG	gga:395530

GEISHA Id	COLIVA1.Halfter.2008	Data Source	Publication
Complete cDNA Template Probe	show GCGCCGCGGCCGGCACGGAGGGGAGAGGCGTGCATGTGGGACCGGCCCCGAGGAGCCCCCACGCCGCGCTGAGCCGCCG GCGCCCCGCCGCCCAGGGACCGACGGAGCAGCGCGGTGCGCGGTAACATGTGGCGTTGGCTGGGCTTCGGGCTGCTGCT GAGCGCCGAGCTCAGCGCCGTGTCCGCCGCGGGTTGTTCTGGTTGTGGAAAATGTGACTGCAGTGGAGTAAAAGGACAA AAGGGAGAAAGAGGCCTTCCGGGACTACAGGGTGTGATTGGGTTTCCTGGAATGCAAGGACCTGAAGGTCCCCCTGGGC CACCAGGACTTAAGGGTGATACTGGAGAACCAGGGCTGCCAGGAACAAAAGGAACAAGAGGCCCACCAGGACCATCAGG ATTTCCAGGAAACCCAGGCCTCCCTGGCATTCCTGGACAAGATGGCCCTCCTGGTCCACCTGGCATTCCAGGATGTAAT GGCACAAAGGGTGAAAGAGGTCCAGTAGGTCCCCCAGGTTTACCGGGACTGACTGGAAGCATAGGACCCCCAGGACCTC CTGGAATTAAGGGAGATCCAGGTGAAGTGATTGGTATTTTACCTCCTAGTGTGCTAAAAGGTGATAAAGGCTTTCCTGG CCAACCTGGACTACCTGGTCCACCTGGAACTCCAGGGTTTCAGGGACCAATGGGGCCACCAGGGATTCCAGGAGAACCA GGTCCCCCCGGGCCACCAGGACCCCCAGGCGAGAAGGGCTACATGGGCTTGGGCTTTCAAGGTCCCAAAGGTGAAAAGG GAGAACAAGGGGTCCAGGGTCCCCCGGGGCCACCAGGACCAGCACCACACATGAAAGAAAAAGGAAGCGAAATCATAAA GGGAGAAAAGGGTGAGCCAGGTGAAAAGGGTGAACAGGGAGTCCCAGGATTGCCAGGCTCAGGTTACAGAGGAGAAAAG GGTGAACCTGGGAAGCCCGGTCCACGTGGAAAGCCTGGAAAAGATGGTGAACCAGGACCAAAAGGAGAACCCGGCTTGC CTGGAGGGTTTGGGATTCCAGGAAGGCCTGGGGAACCTGGTGCTAAGGGTGAAAAAGGTGATCAAGGTCCTCAAGGGCC TCCAGGAAGAATTATAGATGCTGGACCAATAGATACTTTTGGTGAAAAAGGAGACCCTGGAGTTTCAGGTTTGCCTGGA CTAAAAGGTCAAAAAGGTGAAAAAGGTTTCCCTGGTGCACAAGGGATCCCAGGAATTCCAGGTCGACCAGTTCCAGACA TGGTAGGATCACCTGGTGTCCCTGGCCAGAGAGGTGAAAAAGGTGAAAAGGGTTCTCCAGGATTCCCTATACCTGGACC TCCTGGAAGAGATGGTTTCCCAGGCCCACCCGGGTTGCCCGGCCCACCAGGTCCTCCAGGTGTAACAGATGGAATAGAT CAATGTCAGCAAGGGCAACCTGGTGCACCAGGTGTACCTGGACCTCCAGGGCAACATGGATTTCCAGGAGAGATGGGAG AGAAAGGTGAAAAAGGTGAAACCTGTGCCTTGTGTGATAAAGTAGGACCCCCTGGACTTCCAGGACCACAAGGACTACC GGGTCCAGCAGGTTTTCCGGGACAGTCAGGTTTCAAGGGTGACAGAGGCTTACCTGGACTTGATGGCCTTCCAGGCGTA CCCGGGCCCCCAGGCGCTCCAGGACTCATTGGCCTCCCTGGGGCAAAAGGAGAACCAGGAGACTTTACTTATGATTCCA TCCTGAAAGGTGAGAAGGGAGATCCTGGTTTCCCAGGACAACCAGGTATTCCTGGAAGAGAAGGAACACCAGGAAAAGA CGGATTGCCAGGTCCTCAAGGTCCAAAAGGAGCATCGGGTACAGCTGGCTTGAAAGGAGAACGTGGTCCCCCTGGACAA CCTGGATTCCCTGGAGTACGTGGTGAAAGAGGTTTACCTGGCTCTCCTGGGGTAGGCACTGCAGGGTTACCTGGTGACA AAGGAGAGAGAGGTTTTGCTGGAACTCCAGGTTTACCAGGTCTTCCAGGAACAAAAGGTGAAGCAGGACGAACTGTACC ACTCCCTGGACCTCCTGGGGCAGATGGCCTTCCTGGACCACCTGGTTTCCCTGGACCCCAAGGTGACAAAGGGAATCCT GGGCTTCCGGGGAGACCTGGCCTGCCAGGAGAAAAAGGTGCTGTTGGGCAGCCAGGTATAGGGTTTCCTGGACCTCCAG GACCCAAAGGTTTCCCAGGTCAGCCTGGCTCACCTGGTCCTCCGGGTACTCCTGGAACCCCTGGCCTGGATGGTTTTCC AGGCACACCAGGTTTACAAGGTCAAAAAGGTGAACCTGGAGTGGGTCTCCCTGGTCCTAAAGGGTTACCAGGCATCCCA GGTCCAGCTGGCATCCCTGGAGAAAAAGGAAATCCAGGGCTGCCTGGCTTACGAGGTGAACAAGGATTCCCAGGTGTAC CTGGACAACAAGGATTTAGAGGAGATCCAGGCCTCCCTGGACTACAGGGCTTGCCAGGCCCCCAGGGCTCACCAGGAGT GGGCCCACCGGGATTGCCAGGGCCCGCTGGGCAGCCAGGACCTGAGGGGCCACCAGGATTTCCTGGAATAAAAGGAGAA AGGGGCTTCCCTGGTATCCCAGGTCTAGATATGCCAGGGCCAAAAGGAGATAAAGGTAGCCAGGGCCAGCCTGGAGTAC CAGGGTCTGTGGGGCTACCTGGCCTGCCAGGTCCACAAGGATCTGTTGGACTGAAAGGATCAGCAGGAGCCAAAGGAGA AATGGGAGTTATGGGAACTCCAGGGTTGCCAGGGACTCCTGGACCAGTTGGAGATCGAGGGTTGCCTGGTGAAAAAGGT AGCCAAGGTTTGAAAGGTGTGGTTGGACCACAGGGTGAACCAGGTGTCAAAGGGGATAAAGGTGAAGCTGGTCTTCCGG GAATACCTGGAAGCATGGACACCATGGACATGGTTAGTCTCAAAGGCCAAAAGGGAGATCCTGGAGAAAAAGGGGACCT TGGTCCAACAGGAGAAAAAGGGTTACGTGGGGAGTATGGAGAACCAGGAATTCCAGGAAGGGATGGTGAACCTGGTACT CCGGGACAACCAGGACCAAAAGGAGATCAAGGCCCCCCAGGGTACCCAGGAGATCCAGGAATTCCAGGGCAGAAAGGAT CAGTTGGTGAAATGGGTTTGCCAGGAACACCTGGAGAAAAGGGTCTGCCTGGAATACCAGGTTCACCAGGCACACCAGG GTTCCCTGGGCAAAAAGGTGAAAAAGGAGACAAAGGAGCAGCAGGTTTTCCTGGAATTGGCTTTCCAGGATCTCCTGGT GAGAAGGGAGAACCAGGAAGAACAGGCAGTCCGGGTTTGTCTGGAGACAAAGGTGAAAAGGGTAATGCAGGAATTCCAG GAATGCCGGGTGCTCCAGGTCCCAAAGGATCCCCTGGCATTGCAGGATTTCCAGGCAACCCAGGCCTCCATGGAGCAAA GGGTGAAAAAGGACTTCCTGGCTTAAGTGGCATCCCAGGCTTAAAAGGAGAACCAGGTGAACCTGGTGTTCCTGGTCCT GCTGGTTCCATTGGTCAGAAGGGTGAACCAGGCTATGATGGGATTCCAGGCACAGCTGGTGCAAAGGGTGAACAAGGTG TACCAGGTAGAGGAGTTCCAGGATATCCAGGTGCAAAGGGAGATAAAGGTGCAAAGGGTGAAGTGGGTTTCCCAGGATC CCCAGGAATTCCAGGGATTCCAGGCTTAAAAGGAGAACAAGGGTATGCTGGCCCACCCGGCCCTAAAGGCAACCAAGGT CTTCCTGGACTACCAGGAAGTGCAATTGAGGGCCCTAAAGGAGACAGAGGACCACAAGGCCAACCCGGCCTTCCAGGTT TACCAGGTCCAACGGGGCCACCAGGACCTCCAGGTCTGAAGGGAGCTAAAGGAGAGCAGGGAAGCGATGGCTGGCCTGG AACTCCTGGAGGTCCAGGAGATAAAGGCGATCCAGGTTTCCAGGGACTGCCAGGTAGTCCTGGTTTGCCAGGAGGTGCT GGTGAAAAGGGTGATCTAGGGCCTCCAGGTGTTCCAGGTGTTCCAGGTCCAAAAGGATCTGCAGGCTTCCCAGGCCTCA AGGGTGAGCGAGGTGACCAAGGTCTTCCTGGATCTAAAGGTTTACAAGGCCCGCCGGGCCCCCCAGGTGCTTTTCAGCT TATCAAAGGAGATCCTGGCTTACCTGGCCCGGTAGGACCAGTTGGTCTCAAAGGATTCCCAGGACATCCAGGTCCCAAA GGACAGCAAGGAGTAACAGGGCCTTCAGGTGTACCTGGACCACCTGGTAGTCCAGGGTTTGATGGCAGACCAGGGCAAA AAGGAGAAGTTGGTCCTTATGGTCCTCCAGGGCCCAGAGGAATCCCTGGTCCGCCTGGCCCTGAAGGTTTGCCTGGGGC TATGGGTCCACCAGGTGCAGCATCTGTTGCTCATGGCTTCCTTGTCACCAGACACAGTCAAACCACTGAAGAACCACAA TGTCCATTTGGAACAAGGCTGATTTACCATGGCTACTCCCTTCTTTATGTACAAGGAAATGAAAGAGCACACGGTCAAG ATCTGGGCACTGCAGGGAGCTGTCTTCGTAAATTTAGTACTATGCCTTTCTTATTTTGCAATATCAACAATGTATGTAA CTTTGCATCAAGGAATGACTATTCCTACTGGCTGTCCACTCCTGAACCCATGCCAATGAGTATGGCACCTATCACTGGT GAAAGTATCAGACCATTCATCAGCAGATGCTCTGTGTGTGAAGCTCCTGCTATGGTAATCGCCGTTCACAGTCAAACAA TCCAGATACCACCATGTCCTGAAGGCTGGAGTTCCCTTTGGATTGGTTACTCCTTTGTCATGCACACCAGTGCTGGTGC TGAGGGCTCTGGCCAGGCCCTGGCGTCTCCTGGTTCCTGCCTGGAGGAGTTCCGCAGCGCTCCCTTCATTGAATGCCAT GGCCGGGGCACCTGCAATTATTATGCAAATGCTTACAGCTTCTGGCTTGCCACTATAGAGAGGAATGAGATGTTCAAGA AACCGACTCCGTCAACTTTGAAAGCAGGGGATCTGCGCTCCAACGTTAGCCGTTGTCAAGTCTGTATGAGAAATACATA ATGACTTTTGAATTTCAACTTATTTCACACAATATGGTGCTATTTGTTTAACAGCAATGAAGCCTAGACATATATCATA TGTACCTCATTGTTGTCCAATATGAAAACAGTAAAGTGCCTTTTAGGAACTTGCATAACTAACACACACTGCTTTACTG GCCCTGTCCTTGCTGAAGAAGAAAAGAGACAACAAAGATAAGCTTCAAATGTTGACATGCCAAATGGCACTTTTGATCA AAAAATATATATTTTTTATATAAATGCAATGCACTGATAGAATAAAGAGTCAGCATTCGTCCAGAAAAATGCAAAGGTG CTAGGAGGTATGCAGTTCTGCCTTATACTGTTGGACTCCCCTTTCTCATTCTTGTATTATATATTTAGATTCATTTTTC TTCCCCAGATGAGTTTGTTGTTATCATTATTTAGGTGTCTCAAAATCCCAGACTCTTGTGTATGTACTTATTGTTCCTT ATTGTACAAAGCAATACTAATGTAAAAAAAAAAAAAAAAAAAAAAAAAGAGTTCTGGGATTACAGACTGTGGTTAAGCA ACAAGTAACCATCTTTTCAAAGCATAGATTGCCATCCCGCAAACCTTTGCTTCTGTTGTAGTCCTTAGCGCTATTGGTT GTAATGGGACTACACCTGGAAGAGACTTCTGAATCGGTCTCCCAATAGGCAAGTAAGTGTTTCTGCTATGTTGGTACTA TGCAGCTTCTTCATGCAGTAGAACAAACTTTCCTGTGGAATAAAGAATGATCCAGCAATGGTCAAGAAAAAAAATATAT AAATGTGTTAGTAATTTATATAGAGATCAACCATTAGTCTTTGAGTTTATCATTTCAGAAAGAAGCTTACAGAAGTTTT CTTCTTTGCAGTGTCATAAATTCGGTGTTAAATACCATAATATGATGTGAAATGTTCATTTTATATAGGTCATTTCAAT TCCAAATTTGCAGAGACTGAACCCAGGTTAATAGCTATTTGTGTTTATTATAGTAAATCCCGCTTTGAGCTTGTAGTCT TTATTCTGTATTTAATATTTTTCAGGGTTTTAAACACTACTCACACACTGAATGACTTGATTTTGAGAAGTATAAGGCC TTCATTTTGTTAATACCGTGCCAAAAAATTCTTTACAGTGGCCTCATTAATATTTCTAAAGAATTTCTATGCAATGACA CCAATGTTTGAGCACATCTGCATCCAGAAGTGTTTTACAGACTATCATCATGCAAATACCAAAAGTTTTTTTTTTTTTT ACAAATGCCGAGGCCTTTGTGTAATTTCTTAAGTGTGTATTATTTCTTACAAAGTCAAGTTTGTAATAAAACTATTTGT GTAAAAA
Citation	Halfter W, Dong S, Dong A, Eller AW, Nischt R. Origin and turnover of ECM proteins from the inner limiting membrane and vitreous body. Eye (Lond). 2008 Oct;22(10):1207-13. doi: 10.1038/eye.2008.19. Epub 2008 Mar 14.
Copyright	© 2013 The Royal College of Ophthalmologists
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_001162399.1