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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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VSX1
visual system homeobox 1

The human orthologue of this gene is associated
with the following human diseases:

Gene

Official Symbol	VSX1
Official Full Name	visual system homeobox 1
CGNC ID	6501
also known as	CHX10-1, visual system homeobox 1\|homeobox protein Chx10-1\|transcription factor VSX1
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_204769
Polypeptide	NP_990100

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	30813	ENSG00000100987	MIM:122000	MIM:605020
Mouse	114889	ENSMUSG00000033080	All phenotypic alleles (4):Targeted, knock-out(2) Targeted, other(2)	MGI:1890816
Xenopus	100101658, 779073			853165
Zebrafish	30598	ENSDARG00000056292	ZDB-GENE-990415-205	ZFIN:ZDB-GENE-990415-205

Gene Ontology

Molecular Function	sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Process	multicellular organismal development, response to stimulus, transcription, DNA-templated, more...visual perception
Cellular Component	nucleus

Links to other databases

Entrez Gene	395537
Ensembl Gene
KEGG	gga:395537

Entry 1

GEISHA Id	VSX1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	CCGCATCCAGGTTTGGTTTC
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGTCCCGTTTTCACACTGCTGTCG	cDNA Template Length	715
Forward cDNA Template Probe	show CACGGNNNTTATCAACTTGCGTGCTGGGACACTCTCCAGCCTCAACCTGGGCTTCACCTGATGCTCTGCTGAGAAGTGC CCTTCTAAGTGAGGGAATAGAGCCGGGAGGAAGGTATCCAGTTTAAAGATGCCCTGAATTCAGATAAAAGTTCAATTAT TTCAGAAAAATTATGAAAATTTATCATTAACCCAGTAAGTATTCGGACCTCCAAGGAAGGCTGTGAGCTCGAGGCCTCT CCCGGGGGGCCCCAAGCTCAGGGGCCCCGGTCCTTCGGCCCTGGGTGGGGATCCCCTTTGAACAACTGGCCCATGACCC TCATCTTTTCCAGCTGGGCTGCCCGGAAAAGGTCAAGGGTTGTGTCTTCGGAATCTTTCACAGGGCCAGCCTTTCCGAA CCTCCCCGGGAAACGGGCCGGCTTCCCTGGAAGTTCCTCTCGATCCGGCCCGGATGACGACCCATCTGCCGGTTTCTCC GGATATTCGACTTCCTGGTGCACTACCGGGAACTCCTTGTGCTTGCCCGGAACCAACGGGGCTCAGGATCCAACCAGCC AATTCTTGGCAAAGTTAATAATGAACCCGGCCAAAGGAATGAATTGCCGCACCATGGTTCCGAAAAGGCCGAATTAACC CATCAGGTTGTTCGGGCCCAGGAATTTTTCCGGTTTCGGCAATTTGGTTCTCCGGTCCTAAAACCAAACCTGGATTAAG GANNNNAACCNTTGAAACTGGCTGGGGCAGCAGAAGGAT

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 11

Eye
Neural Plate/Tube

13-18

stage 17

stage 18

Ear/Otic Placode
Eye
Mesonephros
Neural Crest
Spinal Cord

19-24

stage 21

stage 22

stage 24

Ear/Otic Placode
Eye
Mesonephros
Spinal Cord

stage 25

Ear/Otic Placode
Eye
Mesonephros
Spinal Cord

Entry 2

GEISHA Id	CHX10.1.Li.2008	Data Source	Publication
Complete cDNA Template Probe	show CGGCGGTGCCCGCTCCGGGCTGGGCCAGGCGGCGGCGATGCCGGGCCGGGCGGACCCGTCGGGGGGCCGCGCGGCGGTG CCGGTGCCGCTTCCCGTCGCGGTGGCGGCGGCCCCGAGCCCGGCGTCGGTTCGCAGCGCCCTCCCCGAGCGGTCGGCGC GTCCGGGAGGAGCGGGGCTGCGGGCCAAGGGCTTCGCCATCACCGACCTGCTGGGGCTGGAGGCCGAGCTGCAGCCCCC CCCCGGGGCCGCCCCCGGGCCCGCCGGCGGCTACGAAGGCGGCGGGGCGCTGGGGCTGGGGCTGGGGCTGCTGTGCGGC TTGGCGGGGCCCGGAGCCCCCTGCCTGCTGCCCGCCCCGCTGCCGCTGCTGCCCGCCCGCGGCCCCCGCCCGGGTCCCC CCGGGCCTCCGCCCGCCGCCCGCCGCCACAAGGAGAGTGCCTCCGATGAGGACAGCCTGTCCGGGGACGCCAGCGAGCT GAAGATGCCGGCTTCGCAGATCAAGAGGAAGAAGCGGCGGCACAGGACGGTGTTCACGGCCCATCAGCTGGAGGAGCTG GAGAAGGCGTTCAACGAAGCTCACTACCCCGACGTGTACGCCAGGGAGATGCTGGCGGTGAAGACGGAGCTGCCCGAGG ACCGCATCCAGGTTTGGTTTCAGAACCGAAGAGCCAAGTGGCGGAAGCGGGAGAAGTGCTGGGGCCGGAGCAGCGTGAT GGCTGAGTACGGCCTCTACGGAGCCATGGTGCGGCACTCCATCCCTCTGCCCGAGTCCATCATCAACTCTGCCAAGAGT GGGCTGGTGGGATCCTGCGCCCCGTGGCTGCTGGGCATGCACAAGAAGTCCATGGAGGTGAGCAGGAAGGCGGAGAGCC AGGAGAAGCCGGCAGATGGCTGGCAAGCGGAGCAGGATGGAGAGGAACTCCAAGGGAAGCAGGCCAGTTCCCAGAGGAG CTCCGAAAAGCTTGGCCCTGCGAAAGATCCCGAAGACACAGCCATCGACCTCTCCAGGACAGCCAAGCAGGAAAAGAGG AGCGTACTGAGACAGTGCGTCAACGGGGACCCCACCACAGAGCAGAAGGACAGGGACCACTGAGCTTGGGCCACCCCGG AAGAGGCCAGAGCTCACAGCTTTCATGGGAGATCAGAATACTTACTGGTTTATTGATATATCTCTATATTTTTCTGAAA TAATTGAACTTTTATCTGAATTCAGGGCATCTTTAAACTGGATACCTTCCTCCCGGCTCTATTCCCTCACTTAGCTGTT CACTTCTCAGCAGAGCGCAGGTGAAGCCAGGTTGGAGGCTGGGAGAGGTGTCCCAACACAGCCGACAGCAGTGTGAAAA CGGGACCATCCTTTGGGCAGCACAGATGGCTGCTCAGGAGAGCCCCCATTCTCCTCTGGGATGTGTCCCGGGCTATCCA AGAGCACAAAGAGCAGCAGTGCCATGGGAATCGCTCCCATACCCGGGTGCAGAGATGATAGCGCAGGTCGTGGACGCCT TCTCTGAGCACTTCCAGCCCTGCACAGCACCCATGTGGTGGTTCCCTCTGCTTCGGGCACACGATTCTTCCACCTCAAG GAGCAGCAGGGCTTTTAAACACGGTAGGGTCCATCCTCAGGCTGGTGTAACTCGACCAGTTTATACCTCCTGAGGATCT GGCCTGCCAATGCAGCCTTACCACTGGATTTACACTGTGTAGCTTCCTTAACTCATGTTTGGGAGAAGGGGGTAAAACC GTTTTTGTTTATGCAATGATTTTGTACACTCTTGAATGTTATCTTCCATACTATGCATAATAGAACAGAAAACGAAGCC ATAGCAACAATTGAACAGTCTCGGGAACTGACGTAAGAGAATACTTTGTCTGTAAATAGTGTAATGTCAGAGCTTGTTT CTTGGTCGTCCTATATTTATGTCTTAAAAGCACTTTAGTGATCTGGATTTTTGAATGTGGCTGTTCCTGTTTTGTCCAC CATTTATTTATTACACACCCG
Citation	Li X, Glubrecht DD, Mita R, Godbout R. Expression of AP-2delta in the developing chick retina. Dev Dyn. 2008 Nov;237(11):3210-21.
Copyright	Copyright © 2008 Wiley-Liss, Inc.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204769).