GEISHA - A Chicken Embryo Gene Expression Database
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FOXA2
forkhead box A2

Gene
Official SymbolFOXA2
Official Full Nameforkhead box A2
CGNC ID49366
also known asHNF-3BETA, hepatocyte nuclear factor 3-beta|hepatocyte nuclear factor-3beta|transcription factor Foxa2, FOX2A, HNF-3b , HNF3b
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204770
PolypeptideNP_990101
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.290
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395539
Ensembl Gene
KEGGgga:395539

Entry 1

GEISHA IdHNF-3bData SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
CGGTGAGCAACATGAACGCGGGGCTGGGCATGAACAGCATGAACACGTACATGACCATGTCGGCCATGAGCACCACGGC
CAACATGACGGCAGCCACCTCCATGAACATGTCCTACGCCAACACGGGCATGAGCCCTTCACTCGCCGGCATGTCCCCA
GGTGCGGGGGCCATGGCCGGCATGGGCTCGGCCGGCGTGGCGGGGATGGGTGCCCACCTGAGCCCCAGCATGAGCCCCA
TGGGAGGCCAAGCGGGCTCTATGAACGCCCTGGCCCCCTACACCAACATGAATTCCATGAGCCCCATCTATGGGCAATC
CAACCTCAACCGCTCGCGGGACCCCAAGACGTACCGGCGGAGCTACACGCACGCCAAGCCCCCCTACTCCTACATCTCG
CTCATCACCATGGCCATCCAGCAGTCGCCCAACAAGATGCTGACGCTGAGCGAGATCTACCAGTGGATCATGGACCTCT
TCCCCTTCTACCGCCAGAACCAGCAACGCTGGCAGAACAGCATCCGCCACTCGCTTTCCTTCAATGACTGCTTCCTCAA
GGTGCCCCGCTCCCCAGACAAGCCGGGCAAAGGCTCCTTCTGGACGCTGCACCCCGACTCGGGCAACATGTTTGAGAAC
GGCTGCTACCTGCGGCGCCAGAAGCGCTTCAAGTGTGAGAAGCAGCTGGCGACCAAGGACGGCGGCGGGGGCAAGAAGG
GGCCGGGGCAGCCCCCCAGCCAGCCCCTGGGGGAGGGCAGCTCCTCGGGGGGCTCCGAGGGCTCGGCGGGAGCTGAGTC
ACCAGCGAGTGCCTCGCCATGCCGGGACCACAAGCGTGCCCTGGCCGAGCTGAAGGGTGCGGCGGCGGGGCCGAGTCCC
GGGGAGCCGTCGGCGGCCTCTCCAGCGCAGCACCTGCTGGCCCCGCCGCACGCCGGGCTGCCCCACGACGCCCACCTCA
AGCCCGAGCACCACTACGCCTTCAACCACCCCTTCTCCATCAACAACCTGATGTCGTCCTCCGAGCAGCAGCACCACCA
CCACCCGCACCACCACCACCACCCCTCGCACAAAATGGACCTCAAGGCCTACGAGCAGGTGATGCACTACTCGGGCTAC
GCCTCGCCCGTGCCCGCCAGCCTGGCCATGGGGCCCGTAACGAACAAAAACCCATTGGAGTCCTCCCCTTTGGCCGGAG
AGACTTCTTACTACCAAGGTGTGTATTCCCGGCCCATCATGAACTCCTCCTAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
stage 6
Hensen's Node
 
7-9
stage 8
stage 9
Anterior Intestinal Portal
Notochord
 

Entry 2

GEISHA IdHnf-3beta.Yanai.2005Data SourcePublication
Complete cDNA Template Probeshow
GTGGCGGGGATGGGTGCCCACCTGAGCCCCAGCATGATCTCCATGGGAGGACAAGCGGGCTCTATGAACGCCCTGGCCC
CCTACACCAACATGAATTCCATGAGCCCCATCTATGGGCAATCCAACCTCAACCGCTCGCGGGACCCCAAGACGTACCG
GCGGAGCTACACGCACGCCAAGCCCCCCTACTCCTACATCTCGCTCATCACCATGGCCATCCAGCAGTCGCCCAACAAG
ATGCTGACGCTGAGCGAGATCTACCAGTGGATCATGGACCTCTTCCCCTTCTACCGCCAGAACCAGCAGCGCTGGCAGA
ACAGCATCCGCCACTCGCTTTCCTTCAATGACTG
CitationYanai M, Tatsumi N, Endo F, Yokouchi Y. Analysis of gene expression patterns in the developing chick liver. Dev Dyn. 2005 Jul;233(3):1116-22.
CopyrightWiley-Liss, Inc. 2005
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
Anterior Intestinal Portal
Endoderm
 
13-18
stage 17
Liver
Pancreas
 
19-24
stage 22
Duodenum
Liver
Pancreas
 
25-30
stage 25
Liver
Pancreas
cystic duct
31-42
stage 42
stage 42
Anterior Intestinal Portal
Endoderm
Liver
Pancreas
Splanchnic Mesoderm
extrahepatic bile ducts, gall bladder epithelium

Entry 3

GEISHA IdHNF3b.Chapman.2002Data SourcePublication
Complete cDNA Template Probeshow
CGGTGAGCAACATGAACGCGGGGCTGGGCATGAACAGCATGAACACGTACATGACCATGTCGGCCATGAGCACCACGGC
CAACATGACGGCAGCCACCTCCATGAACATGTCCTACGCCAACACGGGCATGAGCCCTTCACTCGCCGGCATGTCCCCA
GGTGCGGGGGCCATGGCCGGCATGGGCTCGGCCGGCGTGGCGGGGATGGGTGCCCACCTGAGCCCCAGCATGAGCCCCA
TGGGAGGCCAAGCGGGCTCTATGAACGCCCTGGCCCCCTACACCAACATGAATTCCATGAGCCCCATCTATGGGCAATC
CAACCTCAACCGCTCGCGGGACCCCAAGACGTACCGGCGGAGCTACACGCACGCCAAGCCCCCCTACTCCTACATCTCG
CTCATCACCATGGCCATCCAGCAGTCGCCCAACAAGATGCTGACGCTGAGCGAGATCTACCAGTGGATCATGGACCTCT
TCCCCTTCTACCGCCAGAACCAGCAACGCTGGCAGAACAGCATCCGCCACTCGCTTTCCTTCAATGACTGCTTCCTCAA
GGTGCCCCGCTCCCCAGACAAGCCGGGCAAAGGCTCCTTCTGGACGCTGCACCCCGACTCGGGCAACATGTTTGAGAAC
GGCTGCTACCTGCGGCGCCAGAAGCGCTTCAAGTGTGAGAAGCAGCTGGCGACCAAGGACGGCGGCGGGGGCAAGAAGG
GGCCGGGGCAGCCCCCCAGCCAGCCCCTGGGGGAGGGCAGCTCCTCGGGGGGCTCCGAGGGCTCGGCGGGAGCTGAGTC
ACCAGCGAGTGCCTCGCCATGCCGGGACCACAAGCGTGCCCTGGCCGAGCTGAAGGGTGCGGCGGCGGGGCCGAGTCCC
GGGGAGCCGTCGGCGGCCTCTCCAGCGCAGCACCTGCTGGCCCCGCCGCACGCCGGGCTGCCCCACGACGCCCACCTCA
AGCCCGAGCACCACTACGCCTTCAACCACCCCTTCTCCATCAACAACCTGATGTCGTCCTCCGAGCAGCAGCACCACCA
CCACCCGCACCACCACCACCACCCCTCGCACAAAATGGACCTCAAGGCCTACGAGCAGGTGATGCACTACTCGGGCTAC
GCCTCGCCCGTGCCCGCCAGCCTGGCCATGGGGCCCGTAACGAACAAAAACCCATTGGAGTCCTCCCCTTTGGCCGGAG
AGACTTCTTACTACCAAGGTGTGTATTCCCGGCCCATCATGAACTCCTCCTAA
CitationChapman SC, Schubert FR, Schoenwolf GC, Lumsden A. Analysis of spatial and temporal gene expression patterns in blastula and gastrula stage chick embryos. Dev Biol. 2002 May 1;245(1):187-99.
Copyright2002 Elsevier Science (USA). All rights reserved.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XII
Hypoblast
Kohler's Sickle
 
1-3
stage 3
Endoderm
Germinal Crescent
Head Process
Hensen's Node
Notochord
 
4-6
stage 4
stage 5
stage 6
Ectoderm
Endoderm
Head Process
Hensen's Node
Notochord
Primitive Streak
 

Entry 4

GEISHA IdHnf3β.Abe.2006Data SourcePublication
Complete cDNA Template Probeshow
TTAATGGCTGATCTGGGAGAGACAGAGCACCTGTAGACCAGGCATAATAATTGTACGCTAGAAGATGCAGAAGTCCTGC
CAGTAACTAAAAGAGGGAGTCCATCTGCATCTTCTAGCGTACAAATATTATGCCTGGTCTACAGGTGCTCTGTCTCTCC
CAGATCAGCCATTAACTGAACCCCCTGGTGGCCTCAGAACGGAATTCCGGAATTCCACCGAGGGAAAAGGTCGGTGCCG
CGCTGCCCCGCCTGGTGCCCGGGCAGGTACCTGAGGCAGAGCCGCGGGAAGGCATGAGGCAGAGCCGGGCCAGGGCCGG
GAGGAAGGCGGCCTGAGGCCGAGCAGCCGCGGGGAGAAAGTATGCTGGGAGCGGTGAAAATGGAAGGCCATGAGCACAC
GGACTGGAGCAACTACTACGGGGAGCCCGAGAGCTACTCCTCGGTGAGCAACATGAACGCGGGGCTGGGCATGAACAGC
ATGAACACGTACATGACCATGTCGGCCATGAGCACCACGGCCAACATGACGGCAGCCACCTCCATGAACATGTCCTACG
CCAACACAGGCATGAGCCCTTCACTCGCCGGCATGTCCCCAGGTGCGGGGGCCATGGCCGGCATGGGCTCGGCCGGCGT
GGCGGGGATGGGTGCCCACCTGAGCCCCAGCATGAGCCCCATGGGAGGCCAAGCGGGCTCTATGAACGCCCTGGCCCCC
TACACCAACATGAATTCCATGAGCCCCATCTATGGGCAATCCAACCTCAACCGCTCGCGGGACCCCAAGACGTACCGGA
GGAGCTACACGCACGCCAAGCCCCCCTACTCCTACATCTCGCTCATCACCATGGCCATCCAGCAGTCGCCCAACAAGAT
GCTGACGCTGAGCGAGATCTACCAGTGGATCATGGACCTCTTCCCCTTCTACCGCCAGAACCAGCAACGCTGGCAGAAC
AGCATCCGCCACTCGCTTTCCTTCAATGACTGCTTCCTCAAGGTGCCCCGCTCCCCAGACAAGCCGGGCAAAGGCTCCT
TCTGGACGCTGCACCCCGACTCGGGCAACATGTTTGAGAACGGCTGCTACCTGCGGCGCCAGAAGCGCTTCAAGTGTGA
GAAGCAGCTGGCGACCAAGGACGGCGGCGGGGGCAAGAAGGGGCCGGGGCAGCCCCCCAGCCAGCCCCTGGGGGAGGGC
AGCTCCTCGGGGGGCTCCGAGGGCTCGGCGGGAGCTGAGTCACCAGCGAGTGCCTCGCCATGCCGGGACAACAAGCGTG
CCCTGGCCGAGCTGAAGGGTGCGGCGGCGGGGCCGAGTCCCGGGGAGCCGTCGGCGGCCTCTCCAGCGCATCACCTGCT
GGCCCCGCCGCACGCCGGGCTGCCCCACGACGCCCACCTCAAGCCCGAGCACCACTACGCCTTCAACCACCCCTTCTCC
ATCAACAACCTGATGTCGTCCTCCGAGCAGCAGCACCACCACCACCCGCACCACCACCACCACCCCTCGCACAAAATGG
ACCTCAAGGCCTACGAGCAGGTGATGCACTACTCGGGCTACGCCTCGCCCGTGCCCGCCAGCCTGGCCATGGGGCCCGT
AACGAACAAAAACCCATTGGAGTCCTCCCCTTTGGCCGGAGAGACTTCTTACTACCAAGGTGTGTATTCCCGGCCCATC
ATGAACTCCTCCTAAAGGCAAAGGGGGAAAAACCCCCCCACCCCGCGCGGTCCCCTAGCAGCGTGATGGACTGTGAGCG
CTGCCGAGCACGGTACCTACCCATATAGCTATCTATCTAGTTTTTTGTTTTGTTCCCTGCTGGCTCCAGGTGGTTGCAT
CCACACGGGGAGCAGCGGGCGCACCTCTGCCTGGCACCCCCTAACCCTGACCCTGCGGTCCCCTCGGTTTGCCTTGCGG
GGTGGTTCGGTTTGGTGGTGGGGGGTGTAGGGGAGAGGGTATTTTCTGTTGGGGCTGGTTTCTTTATTTTCGTTGTCGT
TGTCGCAAGGAGGTCTAAATATATCTATTTTTTTGTGTGGAAGTGATGGGGAAAAGAGAAAAACAAACAGACAAAAATG
GACGCAAAGAAAACGAAGCCCTCGTTCGGTGGGAAATCCGTGCGAGTTTGGGATCTGAGGATGGGAAGTCTTGTAAATT
GTACAAAGTCGAC
CitationAbe Y, Chen W, Huang W, Nishino M, Li YP. CNBP regulates forebrain formation at organogenesis stage in chick embryos. Dev Biol. 2006 Jul 1;295(1):116-27. Epub 2006 Apr 19.
CopyrightReprinted from Developmental Biology, 295, Yoko Abea, Wei Chena, Wei Huangc, Mizuho Nishinod and Yi-Ping Li, CNBP regulates forebrain formation at organogenesis stage in chick embryos, 116-127, Copyright 2006, with permission from Elsevier. Copyright © 2006 Elsevier B.V. All rights reserved.
CommentsAuthors said: En1 and Hnf3β cDNA were linearized and transcribed with T7-RNA polymerase. As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #AF150749)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19
stage 19
Forebrain
Head Mesenchyme
The figure caption has been modified to reflect the control result.

Entry 5

GEISHA IdHnf3b.Chapman.2008Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
CGGTGAGCAACATGAACGCGGGGCTGGGCATGAACAGCATGAACACGTACATGACCATGTCGGCCATGAGCACCACGGC
CAACATGACGGCAGCCACCTCCATGAACATGTCCTACGCCAACACGGGCATGAGCCCTTCACTCGCCGGCATGTCCCCA
GGTGCGGGGGCCATGGCCGGCATGGGCTCGGCCGGCGTGGCGGGGATGGGTGCCCACCTGAGCCCCAGCATGAGCCCCA
TGGGAGGCCAAGCGGGCTCTATGAACGCCCTGGCCCCCTACACCAACATGAATTCCATGAGCCCCATCTATGGGCAATC
CAACCTCAACCGCTCGCGGGACCCCAAGACGTACCGGCGGAGCTACACGCACGCCAAGCCCCCCTACTCCTACATCTCG
CTCATCACCATGGCCATCCAGCAGTCGCCCAACAAGATGCTGACGCTGAGCGAGATCTACCAGTGGATCATGGACCTCT
TCCCCTTCTACCGCCAGAACCAGCAACGCTGGCAGAACAGCATCCGCCACTCGCTTTCCTTCAATGACTGCTTCCTCAA
GGTGCCCCGCTCCCCAGACAAGCCGGGCAAAGGCTCCTTCTGGACGCTGCACCCCGACTCGGGCAACATGTTTGAGAAC
GGCTGCTACCTGCGGCGCCAGAAGCGCTTCAAGTGTGAGAAGCAGCTGGCGACCAAGGACGGCGGCGGGGGCAAGAAGG
GGCCGGGGCAGCCCCCCAGCCAGCCCCTGGGGGAGGGCAGCTCCTCGGGGGGCTCCGAGGGCTCGGCGGGAGCTGAGTC
ACCAGCGAGTGCCTCGCCATGCCGGGACCACAAGCGTGCCCTGGCCGAGCTGAAGGGTGCGGCGGCGGGGCCGAGTCCC
GGGGAGCCGTCGGCGGCCTCTCCAGCGCAGCACCTGCTGGCCCCGCCGCACGCCGGGCTGCCCCACGACGCCCACCTCA
AGCCCGAGCACCACTACGCCTTCAACCACCCCTTCTCCATCAACAACCTGATGTCGTCCTCCGAGCAGCAGCACCACCA
CCACCCGCACCACCACCACCACCCCTCGCACAAAATGGACCTCAAGGCCTACGAGCAGGTGATGCACTACTCGGGCTAC
GCCTCGCCCGTGCCCGCCAGCCTGGCCATGGGGCCCGTAACGAACAAAAACCCATTGGAGTCCTCCCCTTTGGCCGGAG
AGACTTCTTACTACCAAGGTGTGTATTCCCGGCCCATCATGAACTCCTCCTAA
CommentsImages Provided by Susan Chapman
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XII
stage XII
Area Pellucida
 
1-3
stage 3
stage 3
stage 3
stage 3
Hensen's Node
Primitive Streak
 
4-6
stage 4
stage 5
stage 5
stage 6
stage 6
Early Mesoderm
Head Mesenchyme
Head Process
Headfold
Hensen's Node
Notochord
Primitive Streak
 
7-12
stage 8
stage 9
stage 9
stage 10
Anterior Intestinal Portal
Head Process
Headfold
Hensen's Node
Lateral Plate Mesoderm
Notochord
 
13-17
stage 17
stage 17
Gut
Head Process
Notochord
 

Entry 6

GEISHA IdFOXA2.Agarwala.2005Data SourcePublication
Complete cDNA Template Probeshow
TTAATGGCTGATCTGGGAGAGACAGAGCACCTGTAGACCAGGCATAATAATTGTACGCTAGAAGATGCAGAAGTCCTGC
CAGTAACTAAAAGAGGGAGTCCATCTGCATCTTCTAGCGTACAAATATTATGCCTGGTCTACAGGTGCTCTGTCTCTCC
CAGATCAGCCATTAACTGAACCCCCTGGTGGCCTCAGAACGGAATTCCGGAATTCCACCGAGGGAAAAGGTCGGTGCCG
CGCTGCCCCGCCTGGTGCCCGGGCAGGTACCTGAGGCAGAGCCGCGGGAAGGCATGAGGCAGAGCCGGGCCAGGGCCGG
GAGGAAGGCGGCCTGAGGCCGAGCAGCCGCGGGGAGAAAGTATGCTGGGAGCGGTGAAAATGGAAGGCCATGAGCACAC
GGACTGGAGCAACTACTACGGGGAGCCCGAGAGCTACTCCTCGGTGAGCAACATGAACGCGGGGCTGGGCATGAACAGC
ATGAACACGTACATGACCATGTCGGCCATGAGCACCACGGCCAACATGACGGCAGCCACCTCCATGAACATGTCCTACG
CCAACACAGGCATGAGCCCTTCACTCGCCGGCATGTCCCCAGGTGCGGGGGCCATGGCCGGCATGGGCTCGGCCGGCGT
GGCGGGGATGGGTGCCCACCTGAGCCCCAGCATGAGCCCCATGGGAGGCCAAGCGGGCTCTATGAACGCCCTGGCCCCC
TACACCAACATGAATTCCATGAGCCCCATCTATGGGCAATCCAACCTCAACCGCTCGCGGGACCCCAAGACGTACCGGA
GGAGCTACACGCACGCCAAGCCCCCCTACTCCTACATCTCGCTCATCACCATGGCCATCCAGCAGTCGCCCAACAAGAT
GCTGACGCTGAGCGAGATCTACCAGTGGATCATGGACCTCTTCCCCTTCTACCGCCAGAACCAGCAACGCTGGCAGAAC
AGCATCCGCCACTCGCTTTCCTTCAATGACTGCTTCCTCAAGGTGCCCCGCTCCCCAGACAAGCCGGGCAAAGGCTCCT
TCTGGACGCTGCACCCCGACTCGGGCAACATGTTTGAGAACGGCTGCTACCTGCGGCGCCAGAAGCGCTTCAAGTGTGA
GAAGCAGCTGGCGACCAAGGACGGCGGCGGGGGCAAGAAGGGGCCGGGGCAGCCCCCCAGCCAGCCCCTGGGGGAGGGC
AGCTCCTCGGGGGGCTCCGAGGGCTCGGCGGGAGCTGAGTCACCAGCGAGTGCCTCGCCATGCCGGGACAACAAGCGTG
CCCTGGCCGAGCTGAAGGGTGCGGCGGCGGGGCCGAGTCCCGGGGAGCCGTCGGCGGCCTCTCCAGCGCATCACCTGCT
GGCCCCGCCGCACGCCGGGCTGCCCCACGACGCCCACCTCAAGCCCGAGCACCACTACGCCTTCAACCACCCCTTCTCC
ATCAACAACCTGATGTCGTCCTCCGAGCAGCAGCACCACCACCACCCGCACCACCACCACCACCCCTCGCACAAAATGG
ACCTCAAGGCCTACGAGCAGGTGATGCACTACTCGGGCTACGCCTCGCCCGTGCCCGCCAGCCTGGCCATGGGGCCCGT
AACGAACAAAAACCCATTGGAGTCCTCCCCTTTGGCCGGAGAGACTTCTTACTACCAAGGTGTGTATTCCCGGCCCATC
ATGAACTCCTCCTAAAGGCAAAGGGGGAAAAACCCCCCCACCCCGCGCGGTCCCCTAGCAGCGTGATGGACTGTGAGCG
CTGCCGAGCACGGTACCTACCCATATAGCTATCTATCTAGTTTTTTGTTTTGTTCCCTGCTGGCTCCAGGTGGTTGCAT
CCACACGGGGAGCAGCGGGCGCACCTCTGCCTGGCACCCCCTAACCCTGACCCTGCGGTCCCCTCGGTTTGCCTTGCGG
GGTGGTTCGGTTTGGTGGTGGGGGGTGTAGGGGAGAGGGTATTTTCTGTTGGGGCTGGTTTCTTTATTTTCGTTGTCGT
TGTCGCAAGGAGGTCTAAATATATCTATTTTTTTGTGTGGAAGTGATGGGGAAAAGAGAAAAACAAACAGACAAAAATG
GACGCAAAGAAAACGAAGCCCTCGTTCGGTGGGAAATCCGTGCGAGTTTGGGATCTGAGGATGGGAAGTCTTGTAAATT
GTACAAAGTCGAC
CitationAgarwala S, Aglyamova GV, Marma AK, Fallon JF, Ragsdale CW. Differential susceptibility of midbrain and spinal cord patterning to floor plate defects in the talpid2 mutant. Dev Biol. 2005 Dec 1;288(1):206-20. Epub 2005 Oct 21.
CopyrightCopyright © 2005 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204770).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-26
stage 26
Midbrain
Medial Floor Plate

Entry 7

GEISHA IdHNF-3BETA.Foley.2000Data SourcePublication
Complete cDNA Template Probeshow
TTAATGGCTGATCTGGGAGAGACAGAGCACCTGTAGACCAGGCATAATAATTGTACGCTAGAAGATGCAGAAGTCCTGC
CAGTAACTAAAAGAGGGAGTCCATCTGCATCTTCTAGCGTACAAATATTATGCCTGGTCTACAGGTGCTCTGTCTCTCC
CAGATCAGCCATTAACTGAACCCCCTGGTGGCCTCAGAACGGAATTCCGGAATTCCACCGAGGGAAAAGGTCGGTGCCG
CGCTGCCCCGCCTGGTGCCCGGGCAGGTACCTGAGGCAGAGCCGCGGGAAGGCATGAGGCAGAGCCGGGCCAGGGCCGG
GAGGAAGGCGGCCTGAGGCCGAGCAGCCGCGGGGAGAAAGTATGCTGGGAGCGGTGAAAATGGAAGGCCATGAGCACAC
GGACTGGAGCAACTACTACGGGGAGCCCGAGAGCTACTCCTCGGTGAGCAACATGAACGCGGGGCTGGGCATGAACAGC
ATGAACACGTACATGACCATGTCGGCCATGAGCACCACGGCCAACATGACGGCAGCCACCTCCATGAACATGTCCTACG
CCAACACAGGCATGAGCCCTTCACTCGCCGGCATGTCCCCAGGTGCGGGGGCCATGGCCGGCATGGGCTCGGCCGGCGT
GGCGGGGATGGGTGCCCACCTGAGCCCCAGCATGAGCCCCATGGGAGGCCAAGCGGGCTCTATGAACGCCCTGGCCCCC
TACACCAACATGAATTCCATGAGCCCCATCTATGGGCAATCCAACCTCAACCGCTCGCGGGACCCCAAGACGTACCGGA
GGAGCTACACGCACGCCAAGCCCCCCTACTCCTACATCTCGCTCATCACCATGGCCATCCAGCAGTCGCCCAACAAGAT
GCTGACGCTGAGCGAGATCTACCAGTGGATCATGGACCTCTTCCCCTTCTACCGCCAGAACCAGCAACGCTGGCAGAAC
AGCATCCGCCACTCGCTTTCCTTCAATGACTGCTTCCTCAAGGTGCCCCGCTCCCCAGACAAGCCGGGCAAAGGCTCCT
TCTGGACGCTGCACCCCGACTCGGGCAACATGTTTGAGAACGGCTGCTACCTGCGGCGCCAGAAGCGCTTCAAGTGTGA
GAAGCAGCTGGCGACCAAGGACGGCGGCGGGGGCAAGAAGGGGCCGGGGCAGCCCCCCAGCCAGCCCCTGGGGGAGGGC
AGCTCCTCGGGGGGCTCCGAGGGCTCGGCGGGAGCTGAGTCACCAGCGAGTGCCTCGCCATGCCGGGACAACAAGCGTG
CCCTGGCCGAGCTGAAGGGTGCGGCGGCGGGGCCGAGTCCCGGGGAGCCGTCGGCGGCCTCTCCAGCGCATCACCTGCT
GGCCCCGCCGCACGCCGGGCTGCCCCACGACGCCCACCTCAAGCCCGAGCACCACTACGCCTTCAACCACCCCTTCTCC
ATCAACAACCTGATGTCGTCCTCCGAGCAGCAGCACCACCACCACCCGCACCACCACCACCACCCCTCGCACAAAATGG
ACCTCAAGGCCTACGAGCAGGTGATGCACTACTCGGGCTACGCCTCGCCCGTGCCCGCCAGCCTGGCCATGGGGCCCGT
AACGAACAAAAACCCATTGGAGTCCTCCCCTTTGGCCGGAGAGACTTCTTACTACCAAGGTGTGTATTCCCGGCCCATC
ATGAACTCCTCCTAAAGGCAAAGGGGGAAAAACCCCCCCACCCCGCGCGGTCCCCTAGCAGCGTGATGGACTGTGAGCG
CTGCCGAGCACGGTACCTACCCATATAGCTATCTATCTAGTTTTTTGTTTTGTTCCCTGCTGGCTCCAGGTGGTTGCAT
CCACACGGGGAGCAGCGGGCGCACCTCTGCCTGGCACCCCCTAACCCTGACCCTGCGGTCCCCTCGGTTTGCCTTGCGG
GGTGGTTCGGTTTGGTGGTGGGGGGTGTAGGGGAGAGGGTATTTTCTGTTGGGGCTGGTTTCTTTATTTTCGTTGTCGT
TGTCGCAAGGAGGTCTAAATATATCTATTTTTTTGTGTGGAAGTGATGGGGAAAAGAGAAAAACAAACAGACAAAAATG
GACGCAAAGAAAACGAAGCCCTCGTTCGGTGGGAAATCCGTGCGAGTTTGGGATCTGAGGATGGGAAGTCTTGTAAATT
GTACAAAGTCGAC
CitationFoley AC, Skromne I, Stern CD. Reconciling different models of forebrain induction and patterning: a dual role for the hypoblast. Development. 2000 Sep;127(17):3839-54.
CopyrightPrinted in Great Britain © The Company of Biologists Limited 2000
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204770).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XII
Hypoblast
Stage XII-XIII EG&K
1-3
stage 2
Hypoblast
 
4
stage 4
stage 4
Hypoblast
Primitive Streak
 

Entry 8

GEISHA IdHNF3-B.Levin.1995Data SourcePublication
Complete cDNA Template Probeshow
TTAATGGCTGATCTGGGAGAGACAGAGCACCTGTAGACCAGGCATAATAATTGTACGCTAGAAGATGCAGAAGTCCTGC
CAGTAACTAAAAGAGGGAGTCCATCTGCATCTTCTAGCGTACAAATATTATGCCTGGTCTACAGGTGCTCTGTCTCTCC
CAGATCAGCCATTAACTGAACCCCCTGGTGGCCTCAGAACGGAATTCCGGAATTCCACCGAGGGAAAAGGTCGGTGCCG
CGCTGCCCCGCCTGGTGCCCGGGCAGGTACCTGAGGCAGAGCCGCGGGAAGGCATGAGGCAGAGCCGGGCCAGGGCCGG
GAGGAAGGCGGCCTGAGGCCGAGCAGCCGCGGGGAGAAAGTATGCTGGGAGCGGTGAAAATGGAAGGCCATGAGCACAC
GGACTGGAGCAACTACTACGGGGAGCCCGAGAGCTACTCCTCGGTGAGCAACATGAACGCGGGGCTGGGCATGAACAGC
ATGAACACGTACATGACCATGTCGGCCATGAGCACCACGGCCAACATGACGGCAGCCACCTCCATGAACATGTCCTACG
CCAACACAGGCATGAGCCCTTCACTCGCCGGCATGTCCCCAGGTGCGGGGGCCATGGCCGGCATGGGCTCGGCCGGCGT
GGCGGGGATGGGTGCCCACCTGAGCCCCAGCATGAGCCCCATGGGAGGCCAAGCGGGCTCTATGAACGCCCTGGCCCCC
TACACCAACATGAATTCCATGAGCCCCATCTATGGGCAATCCAACCTCAACCGCTCGCGGGACCCCAAGACGTACCGGA
GGAGCTACACGCACGCCAAGCCCCCCTACTCCTACATCTCGCTCATCACCATGGCCATCCAGCAGTCGCCCAACAAGAT
GCTGACGCTGAGCGAGATCTACCAGTGGATCATGGACCTCTTCCCCTTCTACCGCCAGAACCAGCAACGCTGGCAGAAC
AGCATCCGCCACTCGCTTTCCTTCAATGACTGCTTCCTCAAGGTGCCCCGCTCCCCAGACAAGCCGGGCAAAGGCTCCT
TCTGGACGCTGCACCCCGACTCGGGCAACATGTTTGAGAACGGCTGCTACCTGCGGCGCCAGAAGCGCTTCAAGTGTGA
GAAGCAGCTGGCGACCAAGGACGGCGGCGGGGGCAAGAAGGGGCCGGGGCAGCCCCCCAGCCAGCCCCTGGGGGAGGGC
AGCTCCTCGGGGGGCTCCGAGGGCTCGGCGGGAGCTGAGTCACCAGCGAGTGCCTCGCCATGCCGGGACAACAAGCGTG
CCCTGGCCGAGCTGAAGGGTGCGGCGGCGGGGCCGAGTCCCGGGGAGCCGTCGGCGGCCTCTCCAGCGCATCACCTGCT
GGCCCCGCCGCACGCCGGGCTGCCCCACGACGCCCACCTCAAGCCCGAGCACCACTACGCCTTCAACCACCCCTTCTCC
ATCAACAACCTGATGTCGTCCTCCGAGCAGCAGCACCACCACCACCCGCACCACCACCACCACCCCTCGCACAAAATGG
ACCTCAAGGCCTACGAGCAGGTGATGCACTACTCGGGCTACGCCTCGCCCGTGCCCGCCAGCCTGGCCATGGGGCCCGT
AACGAACAAAAACCCATTGGAGTCCTCCCCTTTGGCCGGAGAGACTTCTTACTACCAAGGTGTGTATTCCCGGCCCATC
ATGAACTCCTCCTAAAGGCAAAGGGGGAAAAACCCCCCCACCCCGCGCGGTCCCCTAGCAGCGTGATGGACTGTGAGCG
CTGCCGAGCACGGTACCTACCCATATAGCTATCTATCTAGTTTTTTGTTTTGTTCCCTGCTGGCTCCAGGTGGTTGCAT
CCACACGGGGAGCAGCGGGCGCACCTCTGCCTGGCACCCCCTAACCCTGACCCTGCGGTCCCCTCGGTTTGCCTTGCGG
GGTGGTTCGGTTTGGTGGTGGGGGGTGTAGGGGAGAGGGTATTTTCTGTTGGGGCTGGTTTCTTTATTTTCGTTGTCGT
TGTCGCAAGGAGGTCTAAATATATCTATTTTTTTGTGTGGAAGTGATGGGGAAAAGAGAAAAACAAACAGACAAAAATG
GACGCAAAGAAAACGAAGCCCTCGTTCGGTGGGAAATCCGTGCGAGTTTGGGATCTGAGGATGGGAAGTCTTGTAAATT
GTACAAAGTCGAC
CitationLevin M, Johnson RL, Stern CD, Kuehn M, Tabin C (1995). A molecular pathway determining left-right asymmetry in chick embryogenesis. Cell. 1995 Sep 8;82(5):803-14.
CopyrightCopyright © 1995 Elsevier Inc. All Rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_204770.1)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
Hensen's Node
 
31-44
stage 44
  

Entry 9

GEISHA IdFOXA2.Agarwala.2001Data SourcePublication
Complete cDNA Template Probeshow
TTAATGGCTGATCTGGGAGAGACAGAGCACCTGTAGACCAGGCATAATAATTGTACGCTAGAAGATGCAGAAGTCCTGC
CAGTAACTAAAAGAGGGAGTCCATCTGCATCTTCTAGCGTACAAATATTATGCCTGGTCTACAGGTGCTCTGTCTCTCC
CAGATCAGCCATTAACTGAACCCCCTGGTGGCCTCAGAACGGAATTCCGGAATTCCACCGAGGGAAAAGGTCGGTGCCG
CGCTGCCCCGCCTGGTGCCCGGGCAGGTACCTGAGGCAGAGCCGCGGGAAGGCATGAGGCAGAGCCGGGCCAGGGCCGG
GAGGAAGGCGGCCTGAGGCCGAGCAGCCGCGGGGAGAAAGTATGCTGGGAGCGGTGAAAATGGAAGGCCATGAGCACAC
GGACTGGAGCAACTACTACGGGGAGCCCGAGAGCTACTCCTCGGTGAGCAACATGAACGCGGGGCTGGGCATGAACAGC
ATGAACACGTACATGACCATGTCGGCCATGAGCACCACGGCCAACATGACGGCAGCCACCTCCATGAACATGTCCTACG
CCAACACAGGCATGAGCCCTTCACTCGCCGGCATGTCCCCAGGTGCGGGGGCCATGGCCGGCATGGGCTCGGCCGGCGT
GGCGGGGATGGGTGCCCACCTGAGCCCCAGCATGAGCCCCATGGGAGGCCAAGCGGGCTCTATGAACGCCCTGGCCCCC
TACACCAACATGAATTCCATGAGCCCCATCTATGGGCAATCCAACCTCAACCGCTCGCGGGACCCCAAGACGTACCGGA
GGAGCTACACGCACGCCAAGCCCCCCTACTCCTACATCTCGCTCATCACCATGGCCATCCAGCAGTCGCCCAACAAGAT
GCTGACGCTGAGCGAGATCTACCAGTGGATCATGGACCTCTTCCCCTTCTACCGCCAGAACCAGCAACGCTGGCAGAAC
AGCATCCGCCACTCGCTTTCCTTCAATGACTGCTTCCTCAAGGTGCCCCGCTCCCCAGACAAGCCGGGCAAAGGCTCCT
TCTGGACGCTGCACCCCGACTCGGGCAACATGTTTGAGAACGGCTGCTACCTGCGGCGCCAGAAGCGCTTCAAGTGTGA
GAAGCAGCTGGCGACCAAGGACGGCGGCGGGGGCAAGAAGGGGCCGGGGCAGCCCCCCAGCCAGCCCCTGGGGGAGGGC
AGCTCCTCGGGGGGCTCCGAGGGCTCGGCGGGAGCTGAGTCACCAGCGAGTGCCTCGCCATGCCGGGACAACAAGCGTG
CCCTGGCCGAGCTGAAGGGTGCGGCGGCGGGGCCGAGTCCCGGGGAGCCGTCGGCGGCCTCTCCAGCGCATCACCTGCT
GGCCCCGCCGCACGCCGGGCTGCCCCACGACGCCCACCTCAAGCCCGAGCACCACTACGCCTTCAACCACCCCTTCTCC
ATCAACAACCTGATGTCGTCCTCCGAGCAGCAGCACCACCACCACCCGCACCACCACCACCACCCCTCGCACAAAATGG
ACCTCAAGGCCTACGAGCAGGTGATGCACTACTCGGGCTACGCCTCGCCCGTGCCCGCCAGCCTGGCCATGGGGCCCGT
AACGAACAAAAACCCATTGGAGTCCTCCCCTTTGGCCGGAGAGACTTCTTACTACCAAGGTGTGTATTCCCGGCCCATC
ATGAACTCCTCCTAAAGGCAAAGGGGGAAAAACCCCCCCACCCCGCGCGGTCCCCTAGCAGCGTGATGGACTGTGAGCG
CTGCCGAGCACGGTACCTACCCATATAGCTATCTATCTAGTTTTTTGTTTTGTTCCCTGCTGGCTCCAGGTGGTTGCAT
CCACACGGGGAGCAGCGGGCGCACCTCTGCCTGGCACCCCCTAACCCTGACCCTGCGGTCCCCTCGGTTTGCCTTGCGG
GGTGGTTCGGTTTGGTGGTGGGGGGTGTAGGGGAGAGGGTATTTTCTGTTGGGGCTGGTTTCTTTATTTTCGTTGTCGT
TGTCGCAAGGAGGTCTAAATATATCTATTTTTTTGTGTGGAAGTGATGGGGAAAAGAGAAAAACAAACAGACAAAAATG
GACGCAAAGAAAACGAAGCCCTCGTTCGGTGGGAAATCCGTGCGAGTTTGGGATCTGAGGATGGGAAGTCTTGTAAATT
GTACAAAGTCGAC
CitationAgarwala S, Sanders TA, Ragsdale CW. Sonic hedgehog control of size and shape in midbrain pattern formation. Science. 2001 Mar 16;291(5511):2147-50. Epub 2001 Mar 1.
Copyright© 2011 American Association for the Advancement of Science. All Rights Reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc NM_204770.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 1
stage 1
stage 1
stage 1
stage 1
stage 1
stage 1
Midbrain
Normal on the left, double labeled
Normal on left, double labeled
Normal on the left, double labeled
normal on left, double labeled
13-18
stage 13
Forebrain
Hindbrain
Isthmus/MHB
Midbrain
Double label
25-26
stage 26
stage 26
Forebrain
Hindbrain
Isthmus/MHB
Midbrain
Double label

Entry 10

GEISHA IdFOXA2.GarciaCampmany.2007Data SourcePublication
Complete cDNA Template Probeshow
TTAATGGCTGATCTGGGAGAGACAGAGCACCTGTAGACCAGGCATAATAATTGTACGCTAGAAGATGCAGAAGTCCTGC
CAGTAACTAAAAGAGGGAGTCCATCTGCATCTTCTAGCGTACAAATATTATGCCTGGTCTACAGGTGCTCTGTCTCTCC
CAGATCAGCCATTAACTGAACCCCCTGGTGGCCTCAGAACGGAATTCCGGAATTCCACCGAGGGAAAAGGTCGGTGCCG
CGCTGCCCCGCCTGGTGCCCGGGCAGGTACCTGAGGCAGAGCCGCGGGAAGGCATGAGGCAGAGCCGGGCCAGGGCCGG
GAGGAAGGCGGCCTGAGGCCGAGCAGCCGCGGGGAGAAAGTATGCTGGGAGCGGTGAAAATGGAAGGCCATGAGCACAC
GGACTGGAGCAACTACTACGGGGAGCCCGAGAGCTACTCCTCGGTGAGCAACATGAACGCGGGGCTGGGCATGAACAGC
ATGAACACGTACATGACCATGTCGGCCATGAGCACCACGGCCAACATGACGGCAGCCACCTCCATGAACATGTCCTACG
CCAACACAGGCATGAGCCCTTCACTCGCCGGCATGTCCCCAGGTGCGGGGGCCATGGCCGGCATGGGCTCGGCCGGCGT
GGCGGGGATGGGTGCCCACCTGAGCCCCAGCATGAGCCCCATGGGAGGCCAAGCGGGCTCTATGAACGCCCTGGCCCCC
TACACCAACATGAATTCCATGAGCCCCATCTATGGGCAATCCAACCTCAACCGCTCGCGGGACCCCAAGACGTACCGGA
GGAGCTACACGCACGCCAAGCCCCCCTACTCCTACATCTCGCTCATCACCATGGCCATCCAGCAGTCGCCCAACAAGAT
GCTGACGCTGAGCGAGATCTACCAGTGGATCATGGACCTCTTCCCCTTCTACCGCCAGAACCAGCAACGCTGGCAGAAC
AGCATCCGCCACTCGCTTTCCTTCAATGACTGCTTCCTCAAGGTGCCCCGCTCCCCAGACAAGCCGGGCAAAGGCTCCT
TCTGGACGCTGCACCCCGACTCGGGCAACATGTTTGAGAACGGCTGCTACCTGCGGCGCCAGAAGCGCTTCAAGTGTGA
GAAGCAGCTGGCGACCAAGGACGGCGGCGGGGGCAAGAAGGGGCCGGGGCAGCCCCCCAGCCAGCCCCTGGGGGAGGGC
AGCTCCTCGGGGGGCTCCGAGGGCTCGGCGGGAGCTGAGTCACCAGCGAGTGCCTCGCCATGCCGGGACAACAAGCGTG
CCCTGGCCGAGCTGAAGGGTGCGGCGGCGGGGCCGAGTCCCGGGGAGCCGTCGGCGGCCTCTCCAGCGCATCACCTGCT
GGCCCCGCCGCACGCCGGGCTGCCCCACGACGCCCACCTCAAGCCCGAGCACCACTACGCCTTCAACCACCCCTTCTCC
ATCAACAACCTGATGTCGTCCTCCGAGCAGCAGCACCACCACCACCCGCACCACCACCACCACCCCTCGCACAAAATGG
ACCTCAAGGCCTACGAGCAGGTGATGCACTACTCGGGCTACGCCTCGCCCGTGCCCGCCAGCCTGGCCATGGGGCCCGT
AACGAACAAAAACCCATTGGAGTCCTCCCCTTTGGCCGGAGAGACTTCTTACTACCAAGGTGTGTATTCCCGGCCCATC
ATGAACTCCTCCTAAAGGCAAAGGGGGAAAAACCCCCCCACCCCGCGCGGTCCCCTAGCAGCGTGATGGACTGTGAGCG
CTGCCGAGCACGGTACCTACCCATATAGCTATCTATCTAGTTTTTTGTTTTGTTCCCTGCTGGCTCCAGGTGGTTGCAT
CCACACGGGGAGCAGCGGGCGCACCTCTGCCTGGCACCCCCTAACCCTGACCCTGCGGTCCCCTCGGTTTGCCTTGCGG
GGTGGTTCGGTTTGGTGGTGGGGGGTGTAGGGGAGAGGGTATTTTCTGTTGGGGCTGGTTTCTTTATTTTCGTTGTCGT
TGTCGCAAGGAGGTCTAAATATATCTATTTTTTTGTGTGGAAGTGATGGGGAAAAGAGAAAAACAAACAGACAAAAATG
GACGCAAAGAAAACGAAGCCCTCGTTCGGTGGGAAATCCGTGCGAGTTTGGGATCTGAGGATGGGAAGTCTTGTAAATT
GTACAAAGTCGAC
CitationGarcía-Campmany L, Martí E. The TGFbeta intracellular effector Smad3 regulates neuronal differentiation and cell fate specification in the developing spinal cord. Development. 2007 Jan;134(1):65-75. Epub 2006 Nov 30.
CopyrightCopyright by the authors. Published by the Company of Biologists Ltd.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_204770.1
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-20
stage 20
stage 20
Spinal Cord
 

Entry 11

GEISHA IdFOXA2.Anderson.2021Data SourceDirect Submission
Complete cDNA Template Probeshow
GCGCTGCCCCGCCTGGTGCCCGGGCAGGTACCTGAGGCAGAGCCGCGGGAAGGCATGAGGCAGAGCCGGGCCAGGGCCG
GGAGGAAGGCGGCCTGAGGCCGAGCAGCCGCGGGGAGAAAGTATGCTGGGAGCGGTGAAAATGGAAGGCCATGAGCACA
CGGACTGGAGCAACTACTACGGGGAGCCCGAGAGCTACTCCTCGGTGAGCAACATGAACGCGGGGCTGGGCATGAACAG
CATGAACACGTACATGACCATGTCGGCCATGAGCACCACGGCCAACATGACGGCAGCCACCTCCATGAACATGTCCTAC
GCCAACACAGGCATGAGCCCTTCACTCGCCGGCATGTCCCCAGGTGCGGGGGCCATGGCCGGCATGGGCTCGGCCGGCG
TGGCGGGGATGGGTGCCCACCTGAGCCCCAGCATGAGCCCCATGGGAGGCCAAGCGGGCTCTATGAACGCCCTGGCCCC
CTACACCAACATGAATTCCATGAGCCCCATCTATGGGCAATCCAACCTCAACCGCTCGCGGGACCCCAAGACGTACCGG
CGGAGCTACACGCACGCCAAGCCCCCCTACTCCTACATCTCGCTCATCACCATGGCCATCCAGCAGTCGCCCAACAAGA
TGCTGACGCTGAGCGAGATCTACCAGTGGATCATGGACCTCTTCCCCTTCTACCGCCAGAACCAGCAGCGCTGGCAGAA
CAGCATCCGCCACTCGCTTTCCTTCAATGACTGCTTCCTCAAGGTGCCCCGCTCCCCAGACAAGCCGGGCAAAGGCTCC
TTCTGGACGCTGCACCCCGACTCGGGCAACATGTTTGAGAACGGCTGCTACCTGCGGCGCCAGAAGCGCTTCAAGTGTG
AGAAGCAGCTGGCGACCAAGGACGGCGGCGGGGGCAAGAAGGGGCCGGGGCAGCCCCCCAGCCAGCCCCTGGGGGAGGG
CAGCTCCTCGGGGGGCTCCGAGGGCTCGGCAGGAGCTGAGTCACCAGCGAGTGCCTCGCCGTGCCGGGACCACAAGCGT
GCCCTGGCCGAGCTGAAGGGTGCGGCGGCGGGGCCGAGTCCCGGGGAGCCGTCGGCGGCCTCTCCAGCGCAGCACCTGC
TGGCCCCGCCGCACGCCGGGCTGCCCCACGACGCCCACCTCAAGCCCGAGCACCACTACGCCTTCAACCACCCCTTCTC
CATCAACAACCTGATGTCGTCCTCCGAGCAGCAGCACCACCACCACCCGCACCACCACCACCACCCCTCGCACAAAATG
GACCTCAAGGCCTACGAGCAGGTGATGCACTACTCGGGCTACGCCTCGCCCGTGCCCGCCAGCCTGGCCATGGGGCCCG
TAACGAACAAAAACCCATTGGAGTCCTCCCCTTTGGCCGGAGAGACTTCTTACTACCAAGGTGTGTATTCCCGGCCCAT
CATGAACTCCTCCTAAAGGCAAAGGGGGAAAAACCCCCCCACCCCGCACGGTCCCCTAGCAGCGTGATGGACTGTGAGC
GCTGCCGAGCACGGTACCTACCCATATAGCTATCTATCTATTTTTTGTTTTGTTCCCTGCTGGCTCCAGGTGGTTGCAT
CCACATGGGGAGCAGCGGGCGCACCTCGCCTGGCACCCCCTAACCCTGACCCTGCGGTCCCCTCGGTTTGCCTTGCGGG
GTGGTTCGGTTTGGTGGGAGGGGGGTGTAGGGGAGAGGGATTTTTCTGTTGGGGCTGGTTTCTTATTTTTTTCGTTGTC
GTTGTCGCAAGGAGGTCTAAATATATCTATTTTTTTGTGTGGAAGTGATGGGGAAAAGAGAAAAACAAACAGACAAAAA
TGGACGCAAAGAAAACGAAGCCCTCGTTCGGTGGGAAATCCGTGCGAGTTTGGGATCTGAGGATGGAAAGTCTTGTAAA
ATTGTACAAAGGGGGAGAAAAAAAAAAACAAAAGAAAACGGGGGAAAAAAAAAGCGAAAAAAAAAAAAGTCAGGATAGA
TCGTTGTAATTGAAACAAACGCTTGATGTTACCGGGAGAGTAAACTACTTGGATCTGATTAATTTATCGTTTCTGTATG
CTTTATTTATGGCTTATAAATGTGTATTCTGGTAGCGACTAGCCAGGTTGCCACAGAACTCTATTAAAGTGTTATTGGC
GGTTTT
CommentsImages provided by Claire Anderson. As insufficient information was provided to verify sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number NM_204770.2). Reference paper: A Ruiz i Altaba, M Placzek, M Baldassare, J Dodd, T M Jessell. Early stages of notochord and floor plate development in the chick embryo defined by normal and induced expression of HNF-3 beta. Dev Biol. 1995 Aug;170(2):299-313. doi: 10.1006/dbio.1995.1216.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
stage 5
stage 6
Early Mesoderm
Headfold
Hensen's Node
Lateral Plate Mesoderm
Notochord
HH4+
7-12
stage 7
stage 8
stage 9
stage 10
stage 11
stage 12
stage 12
stage 12
stage 12
stage 12
stage 12
stage 12
stage 12
Anterior Intestinal Portal
Endoderm
Forebrain
Head Mesenchyme
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Mesencephalon
Midbrain
Myelencephalon
Neural Plate/Tube
Notochord
Pharynx
Sclerotome
Somites
extraembryonic endoderm
HH12+, ventral view
Ventral view
Ventral view, cardiac crescent
section 17
section 2
section 36
section 59
section 63
section 72
13-14
stage 13
stage 14
stage 14
Anterior Intestinal Portal
Endoderm
Gut
Lateral Plate Mesoderm
Neural Plate/Tube
Notochord
Pharynx
Sclerotome
HH13+, ventral
HH14+, ventral
Ventral view
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.290

Mouse

Emage
Eurexpress
MGI GXD

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
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