GEISHA - A Chicken Embryo Gene Expression Database
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PHOX2A
paired-like homeobox 2a

Gene
Official SymbolPHOX2A
Official Full Namepaired-like homeobox 2a
CGNC ID49392
also known as
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Sequence Information
Genomic
RNAZ49262
PolypeptideCAA89259
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395595
Ensembl Gene
KEGG

Entry 1

GEISHA IdPHOX2A.Gimeno.2007Data SourcePublication
Complete cDNA Template Probeshow
GGCGTCCGCCTACGATTTCAACCCTTGCAGCCAACCGGGCGGTTTCCAATACAGCCCAATGCGGGGCGGCTTCGGGGCG
ACCCCCCCCTGCCCGCCCCTCTCCTCCGCCAACTGCGCTTTGGGGGCTCTGCGCGACCACCAACCCTCGCCTTACTCCG
CAGTTCCCTACAAGTTCTTTTCGGACCCATCGGCCATCAACGAGAAGCGGAAGCAGCGCCGGATCCGCACCACGTTCAG
CAGCGCTCAGCTGAAGGAGTTGGAGCGGGTGTTCGCCGAGACCCATTACCCCGACATCTACACCAGGGAGGAGCTGGCC
CTGAAGATCGACCTCACCGAGGCCAGGGTG
CitationGimeno L, Martinez S. Expression of chick Fgf19 and mouse Fgf15 orthologs is regulated in the developing brain by Fgf8 and Shh. Dev Dyn. 2007 Aug;236(8):2285-97.
CopyrightCopyright © 2007 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Z49262).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-20
stage 20
stage 20
Midbrain
Rhombomeres
Check anatomy.

Entry 2

GEISHA IdPHOX2A.Agarwala.2005Data SourcePublication
Complete cDNA Template Probeshow
GGCGTCCGCCTACGATTTCAACCCTTGCAGCCAACCGGGCGGTTTCCAATACAGCCCAATGCGGGGCGGCTTCGGGGCG
ACCCCCCCCTGCCCGCCCCTCTCCTCCGCCAACTGCGCTTTGGGGGCTCTGCGCGACCACCAACCCTCGCCTTACTCCG
CAGTTCCCTACAAGTTCTTTTCGGACCCATCGGCCATCAACGAGAAGCGGAAGCAGCGCCGGATCCGCACCACGTTCAG
CAGCGCTCAGCTGAAGGAGTTGGAGCGGGTGTTCGCCGAGACCCATTACCCCGACATCTACACCAGGGAGGAGCTGGCC
CTGAAGATCGACCTCACCGAGGCCAGGGTG
CitationAgarwala S, Aglyamova GV, Marma AK, Fallon JF, Ragsdale CW. Differential susceptibility of midbrain and spinal cord patterning to floor plate defects in the talpid2 mutant. Dev Biol. 2005 Dec 1;288(1):206-20. Epub 2005 Oct 21.
CopyrightCopyright © 2005 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Z49262).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
Midbrain
Medial or 1st arc
Oculomotor Neurons
25-28
stage 26
stage 26
stage 28
Midbrain
Medial or 1st arc
Oculomotor Complex

Entry 3

GEISHA IdPHOX2A.Abu-Elmagd.2001Data SourcePublication
Complete cDNA Template Probeshow
GGCGTCCGCCTACGATTTCAACCCTTGCAGCCAACCGGGCGGTTTCCAATACAGCCCAATGCGGGGCGGCTTCGGGGCG
ACCCCCCCCTGCCCGCCCCTCTCCTCCGCCAACTGCGCTTTGGGGGCTCTGCGCGACCACCAACCCTCGCCTTACTCCG
CAGTTCCCTACAAGTTCTTTTCGGACCCATCGGCCATCAACGAGAAGCGGAAGCAGCGCCGGATCCGCACCACGTTCAG
CAGCGCTCAGCTGAAGGAGTTGGAGCGGGTGTTCGCCGAGACCCATTACCCCGACATCTACACCAGGGAGGAGCTGGCC
CTGAAGATCGACCTCACCGAGGCCAGGGTG
CitationAbu-Elmagd M, Ishii Y, Cheung M, Rex M, Le Rouëdec D, Scotting PJ. cSox3 expression and neurogenesis in the epibranchial placodes. Dev Biol. 2001 Sep 15;237(2):258-69.
CopyrightCopyright © 2001 Academic Press. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Z49262).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
stage 18
stage 18
stage 18
stage 18
Pharyngeal Arches and Clefts
Placcode
First Nodose Placode
Geniculate Placode
Petrosal Placode
Second Nodose Placode

Entry 4

GEISHA IdPHOX2A.Agarwala.2002Data SourcePublication
Complete cDNA Template Probeshow
GGCGTCCGCCTACGATTTCAACCCTTGCAGCCAACCGGGCGGTTTCCAATACAGCCCAATGCGGGGCGGCTTCGGGGCG
ACCCCCCCCTGCCCGCCCCTCTCCTCCGCCAACTGCGCTTTGGGGGCTCTGCGCGACCACCAACCCTCGCCTTACTCCG
CAGTTCCCTACAAGTTCTTTTCGGACCCATCGGCCATCAACGAGAAGCGGAAGCAGCGCCGGATCCGCACCACGTTCAG
CAGCGCTCAGCTGAAGGAGTTGGAGCGGGTGTTCGCCGAGACCCATTACCCCGACATCTACACCAGGGAGGAGCTGGCC
CTGAAGATCGACCTCACCGAGGCCAGGGTG
CitationAgarwala S, Ragsdale CW. A role for midbrain arcs in nucleogenesis. Development. 2002 Dec;129(24):5779-88.
CopyrightPublished by The Company of Biologists 2007. This material is protected by a copyright retained by the authors. Permission granted by Dr. Ragsdale.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # Z49262.1 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 17
Hindbrain
Midbrain
double labeled
25-29
stage 26
stage 26
stage 26
stage 26
stage 26
stage 26
stage 26
stage 26
stage 26
stage 26
stage 26
stage 26
stage 29
stage 29
stage 29
stage 29
Hindbrain
Midbrain
double labeled

Entry 5

GEISHA IdPHOX2A.Hasan.2010Data SourcePublication
Complete cDNA Template Probeshow
GGCGTCCGCCTACGATTTCAACCCTTGCAGCCAACCGGGCGGTTTCCAATACAGCCCAATGCGGGGCGGCTTCGGGGCG
ACCCCCCCCTGCCCGCCCCTCTCCTCCGCCAACTGCGCTTTGGGGGCTCTGCGCGACCACCAACCCTCGCCTTACTCCG
CAGTTCCCTACAAGTTCTTTTCGGACCCATCGGCCATCAACGAGAAGCGGAAGCAGCGCCGGATCCGCACCACGTTCAG
CAGCGCTCAGCTGAAGGAGTTGGAGCGGGTGTTCGCCGAGACCCATTACCCCGACATCTACACCAGGGAGGAGCTGGCC
CTGAAGATCGACCTCACCGAGGCCAGGGTG
CitationHasan KB, Agarwala S, Ragsdale CW. PHOX2A regulation of oculomotor complex nucleogenesis. Development. 2010 Apr;137(7):1205-13.
CopyrightPublished by The Company of Biologists 2007. This material is protected by a copyright retained by the authors. Permission granted by Dr. Ragsdale.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #Z49262.1)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 6
Midbrain
 

Entry 6

GEISHA IdPHOX2A.Lorente-Cánovas.2012Data SourcePublication
Complete cDNA Template Probeshow
GGCGTCCGCCTACGATTTCAACCCTTGCAGCCAACCGGGCGGTTTCCAATACAGCCCAATGCGGGGCGGCTTCGGGGCG
ACCCCCCCCTGCCCGCCCCTCTCCTCCGCCAACTGCGCTTTGGGGGCTCTGCGCGACCACCAACCCTCGCCTTACTCCG
CAGTTCCCTACAAGTTCTTTTCGGACCCATCGGCCATCAACGAGAAGCGGAAGCAGCGCCGGATCCGCACCACGTTCAG
CAGCGCTCAGCTGAAGGAGTTGGAGCGGGTGTTCGCCGAGACCCATTACCCCGACATCTACACCAGGGAGGAGCTGGCC
CTGAAGATCGACCTCACCGAGGCCAGGGTG
CitationLorente-Cánovas B, Marín F, Corral-San-Miguel R, Hidalgo-Sánchez M, Ferrán JL, Puelles L, Aroca P. Multiple origins, migratory paths and molecular profiles of cells populating the avian interpeduncular nucleus. Dev Biol. 2012 Jan 1;361(1):12-26.
CopyrightCopyright © 2011 Elsevier Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # Z49262.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 21
stage 21
stage 21
stage 24
Isthmus/MHB
Rhombomeres
PAX7 (brown)
PHOX2A (blue)

Entry 7

GEISHA IdPHOX2A.Chambers.2007Data SourcePublication
Complete cDNA Template Probeshow
GGCGTCCGCCTACGATTTCAACCCTTGCAGCCAACCGGGCGGTTTCCAATACAGCCCAATGCGGGGCGGCTTCGGGGCG
ACCCCCCCCTGCCCGCCCCTCTCCTCCGCCAACTGCGCTTTGGGGGCTCTGCGCGACCACCAACCCTCGCCTTACTCCG
CAGTTCCCTACAAGTTCTTTTCGGACCCATCGGCCATCAACGAGAAGCGGAAGCAGCGCCGGATCCGCACCACGTTCAG
CAGCGCTCAGCTGAAGGAGTTGGAGCGGGTGTTCGCCGAGACCCATTACCCCGACATCTACACCAGGGAGGAGCTGGCC
CTGAAGATCGACCTCACCGAGGCCAGGGTG
CitationChambers D, Wilson L, Maden M, Lumsden A. RALDH-independent generation of retinoic acid during vertebrate embryogenesis by CYP1B1. Development. 2007 Apr;134(7):1369-83.
Copyright© 2007
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # Z49262.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-26
stage 26
stage 26
Pharyngeal Arches and Clefts
control embryo

Entry 8

GEISHA IdPHOX2A.Schubert.2005Data SourcePublication
Complete cDNA Template Probeshow
GGCGTCCGCCTACGATTTCAACCCTTGCAGCCAACCGGGCGGTTTCCAATACAGCCCAATGCGGGGCGGCTTCGGGGCG
ACCCCCCCCTGCCCGCCCCTCTCCTCCGCCAACTGCGCTTTGGGGGCTCTGCGCGACCACCAACCCTCGCCTTACTCCG
CAGTTCCCTACAAGTTCTTTTCGGACCCATCGGCCATCAACGAGAAGCGGAAGCAGCGCCGGATCCGCACCACGTTCAG
CAGCGCTCAGCTGAAGGAGTTGGAGCGGGTGTTCGCCGAGACCCATTACCCCGACATCTACACCAGGGAGGAGCTGGCC
CTGAAGATCGACCTCACCGAGGCCAGGGTG
CitationSchubert FR, Lumsden A. Transcriptional control of early tract formation in the embryonic chick midbrain. Development. 2005 Apr;132(8):1785-93. Epub 2005 Mar 16.
Copyrightcopyright 2005 by the authors. Published by the Company of Biologists Ltd.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #Z49262.1 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-21
stage 21
stage 21
Midbrain
 

Entry 9

GEISHA IdPHOX2a.Freter.2012Data SourcePublication
Complete cDNA Template Probeshow
GGCGTCCGCCTACGATTTCAACCCTTGCAGCCAACCGGGCGGTTTCCAATACAGCCCAATGCGGGGCGGCTTCGGGGCG
ACCCCCCCCTGCCCGCCCCTCTCCTCCGCCAACTGCGCTTTGGGGGCTCTGCGCGACCACCAACCCTCGCCTTACTCCG
CAGTTCCCTACAAGTTCTTTTCGGACCCATCGGCCATCAACGAGAAGCGGAAGCAGCGCCGGATCCGCACCACGTTCAG
CAGCGCTCAGCTGAAGGAGTTGGAGCGGGTGTTCGCCGAGACCCATTACCCCGACATCTACACCAGGGAGGAGCTGGCC
CTGAAGATCGACCTCACCGAGGCCAGGGTG
CitationFreter S, Muta Y, O'Neill P, Vassilev VS, Kuraku S, Ladher RK. Pax2 modulates proliferation during specification of the otic and epibranchial placodes. Dev Dyn. 2012 Nov;241(11):1716-28
CopyrightCopyright © 2012 Wiley Periodicals, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (Z49262.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-17
stage 17
stage 17
Cranial Ganglia
Cranial Nerve
g, geniculate; p, petrosal; n, nodose
all
 
 
  

Mouse

Emage
MGI GXD

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
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