GEISHA - A Chicken Embryo Gene Expression Database
Browse By
- Anatomical Location
- Stage
- Gene Name
- GEISHA ID
- Multiple Parameters
Search
- Quick Search
Data Class
Enter Text:
go
- Gene Family QuickSearch
Transcription Factors
Growth Factors
Receptors
MicroRNAs
- Human Disease Gene Search
Documents
- Downloads
- Protocols
- About GEISHA
- Contact Us
Resources
- Transgenic Birds
- Model Organism Databases
- Gene Expression Databases
- Genomic Resources
- Anatomical Atlases
- Chicken Stage Series
_

SIX4
SIX homeobox 4

Gene
Official SymbolSIX4
Official Full NameSIX homeobox 4
CGNC ID49394
also known asSIX5, homeobox protein SIX4|SIX homeobox 5|sine oculis homeobox homolog 4
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNAXM_003641442
PolypeptideXP_003641490
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.334
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395601
Ensembl GeneENSGALG00000017389
KEGGgga:395601

Entry 1

GEISHA IdSIX4.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerGGAACTTTCACAAGCGACTCTTCG
Reverse cDNA Template PrimerAATTAACCCTCACTAAAGGCAACAACAAAAAACCCACTCCACcDNA Template Length850
Forward cDNA Template Probeshow
TTTTTTAACGAGTGGGCATCNTAGGGCNTCGNACGGGANTCTTATCTACCGAAACAGAAAGCAAGAAAAAAAAAAATTA
TAACCCTTGAAGGTCTTCACCCATCTGAACTGTCGGCAGTTTGGCAAGTTCCTTTTTGTCCGGGTCCAGCTCTTCACAA
ACCGGGTCAACCATGTTACCCAAAACATACTGGGATTTCAAACCCAGCATCTTTAAACGGCCGGTTGATTTGCTTTCCA
AATTAGGCAAAAAATTCTCTTTGAGGTCGGGAACAGCTTGCAAAACCAACCTGGGCTCTCGAAAAAAACCCGGGGGTAC
CTGTGCAAATGGGGGGCTCACACGGTCTCCGGTGGAAAAAACAATTTCTCCAACCGCGGGCTGGGCTGTAAAAATGGAC
AACAAATCTTGACGGGAAATGAGGGACCAGTTCTAAAAAGTTGCATAGTTAGGGTTGCTGAAAAAAATCCCGGAAAAGG
TACGGGTTACGGGCAAAAACATGAACGGGCTCTCGAAAAAACCAAACCTCATTTCTGCAGCATTTAAAAAATTCGGGGG
CGTGAGGAAAAAATTATGTGAGGGCGTTACTTTCCCTACCAAGGAGGCCAGGGACTGGATCCCCCCCCTGGATATATTT
TCAAAAAACATGTTTACATTGAGTTGCGGGTTCTAACCAACGGGCTTCACCTGAAAAAACACCAAGGAAAAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 8
stage 9
stage 9
stage 10
stage 10
stage 11
Ear/Otic Placode
Ectoderm
Forebrain
Head Mesenchyme
Hindbrain
Midbrain
Neural Plate/Tube
Primitive Streak
Somites
 
13-18
stage 14
stage 15
Ear/Otic Placode
Foregut
Neural Plate/Tube
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Somatic Mesoderm
Somites
 
19-24
stage 19
stage 23
Leg Mesenchyme
Limb Buds
Neural Plate/Tube
Pharyngeal Arches and Clefts
Somatic Mesoderm
Somites
Widespread Expression
Wing Mesenchyme
 
25
stage 25
Leg Mesenchyme
Pharyngeal Arches and Clefts
Somatic Mesoderm
Somites
Wing Mesenchyme
 

Entry 2

GEISHA IdSIX4.Streit.2002Data SourcePublication
Complete cDNA Template Probeshow
TGGTCTTTGCCCCCGAGCGATCTGCTACGTGGCAACGAGAGCCTGATGAAAGCCCGGGCGCTGGTGGCTTTCCACAGGG
GCATCTACGCCGAGCTCTACAGCATCCTGGAGAGCCACAACTTCGACTCGTCCAACCACCCGCTGCTGCAGGAGCTGTG
GTACAAAGCTCGCTACACCGAGGCGGAGCGAGCCCGGGGCAAACCCCTGGGGGCGGTGGACAAGTACCGGCTGCGGAGG
AAATACCCCCTGCCCCGCACCATCTGGGACGGCGAGGAGACGGTGTACTGCTTCAAGGAGAAGTCCCGCAACGCCCTCA
AGGAGCTCTACAAGCAGAACCGCTACCCCTCGCCGGCCGAGAAGCGCAACCTGGCCAAAATCACCGGGCTGTCCCTCAC
GCAGGTCAGCAACTGGTTCAAGAACCGCCGCCAGCGGGACCGCAACCCGTCCGAGACGCAGTCCAAAAGCGAATCAGAT
GGCAACCCCAGCACGGAGGATGAGTCCAGTAAGGGGCAGGAGGATTTATCCCCACATCCGCTCTCCAGCTCGTCCGACG
GAGTCACCAGCCTCAGCCTTCCCAGCCACATGGAGCCCGTCTACATGCAGCAGCTTGGAAACACTAAAATAGCCTTGAG
CTCATCTGGTGTCCTGTTGAATGGGAACCTCGTGCCCGCCAGTAGCTCTCCCGTCTTTCTCAATGGTAGCTCTTTTCTT
CAGGGACCCAACGGCGTCATTCTCAATGGACTCAGCGTGGGGGCTTCGCAGCCGGTAACTTTAAATTCACCCAAAACCA
CTTCAAGTGCTGTGAGCAACGGGGTGTCCATCACTGACATCATGTCGTCTTCTTCAGAAGATGTAAAGGACTTCAAACT
CCTCCAGGCTTCGGTCCCCAACACGGCAGCAGACACGTTCAGCCCCAGCAACATACCGGTCTCCTTCTCGGGATTGATA
CCGAGCTCAGAAGTGAAAAGGGAAAGCACACAAACTGTTGCTTCCCAAGATGGAGGCTCTGTAGTTACTTTTAATGGTC
CCGTCCAAATAAACCAGTATGGCATTGTCCAGATCCCCAATTTCAGGAACAAATGGCCAGTTGTGAACGGAAGCATCGG
TTTTTTTCTGCAGCTGCCTCCTGTTTCTGTGGCAGCTTCTCAAGGT
CitationStreit, A. Extensive cell movements accompany formation of the otic placode. 2002 DEVELOPMENTAL BIOLOGY 249(2), 237-54.
Copyright"Reprinted from Developmental Biology, 249(2), Streit A., Extensive cell movements accompany formation of the otic placode, 237-54, Copyright (2002), with permission from Elsevier". Copyright © (2002) Elsevier B.V. All rights reserved.
CommentsAccording to the authors, "cDNAs were kind gifts (Refs)." As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence was obtained from NCBI (acc# AJ133778.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
stage 6
stage 6
stage 6
stage 6
stage 6
stage 6
Face Mesenchyme
Head Mesenchyme
Headfold
Neural Plate/Tube
Surface Ectoderm
double labeled
7-12
stage 7
stage 8
stage 8
stage 8
stage 8
stage 8
Early Endoderm
Head Mesenchyme
Headfold
Lateral Plate Mesoderm
Neural Crest
Placode
Surface Ectoderm
double labeled
31-44
stage 44
stage 44
stage 44
  

Entry 3

GEISHA IdSIX4.Litsiou.2005Data SourcePublication
Complete cDNA Template Probeshow
ATGGAGCACGGAGCCGCCGCCGGGGAGGAGGGCAGCGCCGAGCCCGTCCTGCTCCACACGGAACTTTTGGCCCGGAACC
ACCACGCCGCCGCCGCCTCTCCCTCCTCCTCCTCCTCGTCGTCCTCTTCGTCGTCCTCCTCGCAGCCCCCCCTGGCTTT
CTCCCCGGACCACGTCGCGTGTGTGTGCGAGGCGCTGCAGCAGGGGGGCAACCTGGACCGCCTGGCCCGGTTCCTGTGG
TCTTTGCCCCCGAGCGATCTGCTACGTGGCAACGAGAGCCTGATGAAAGCCCGGGCGCTGGTGGCTTTCCACCAGGGCA
TCTACGCCGAGCTCTACAGCATCCTGGAGAGCCACAACTTCGACTCGTCCAACCACCCGCTGCTGCAGGAGCTGTGGTA
CAAAGCTCGCTACACCGAGGCGGAGCGAGCCCGGGGCAAACCCCTGGGGGCGGTGGACAAGTACCGGCTGCGGAGGAAA
TACCCCCTGCCCCGCACCATCTGGGACGGCGAGGAGACGGTGTACTGCTTCAAGGAGAAGTCCCGCAACGCCCTCAAGG
AGCTCTACAAGCAGAACCGCTACCCCTCGCCGGCCGAGAAGCGCAACCTGGCCAAGATCACCGGGCTGTCCCTCACGCA
GGTCAGCAACTGGTTCAAGAACCGCCGCCAGCGGGACCGCAACCCGTCCGAGACGCAGTCCAAAAGCGAATCAGATGGC
AACCCCAGCACGGAGGATGAGTCCAGTAAGGGGCAGGAGGATTTATCCCCACATCCGCTCTCCAGCTCGTCCGACGGAG
TCACCAGCCTCAGCCTTCCCAGCCACATGGAGCCCGTCTACATGCAGCAGCTTGGAAACACTAAAATAGCCTTGAGCTC
ATCTGGTGTCCTGTTGAATGGGAACCTCGTGCCCGCCAGTAGCTCTCCCGTCTTTCTCAATGGTAGCTCTTTTCTTCAG
GGACCCAACGGCGTCATTCTCAATGGACTCAGCGTGGGGGCTTCGCAGCCGGTAACTTTAAATTCACCCAAAACCACTT
CAAGTGCTGTGAGCAACGGGGTGTCCATCACTGACATCATGTCGTCTTCTTCAGAAGATGTAAAGGACTTCAAACTCCT
CCAGGCTTCGGTCCCCAACACGGCAGCAGACACGTTCAGCCCCAGCAACATACCGGTCTCCTTCTCGGGATTGATACCG
AGCTCAGAAGTGAAAAGGGAAAGCACACAAACTGTTGCTTCCCAAGATGGAGGCTCTGTAGTTACTTTTACTGCTCCTG
TCCAAATAAACCAGTATGGCATTGTCCAGATCCCCAATTCAGGAACAAATGGCCAGTTGCTGAACGGAAGCATCGGTTT
CTCTTCTCTGCAGCTGCCTCCTGTTTCTGTGGCAGCTTCTCAAGATAACGTGTCAGTAAATTCGAGCACATCAGATGGA
GGAACTTTCACAAGCGACTCTTCGACGGTGCAACAAGGAAAGGTTTTCTTCAGCCCCCTCGCCCCGAGCGCCGTCGTTT
ATACAGTTCCCAATTCAGGTCAGGCGGTGGGATCTGTCAAGCAGGAAGGACTGGAAAGAAGCCTTGTGTTTTCTCAGTT
GATGCCAGTTGGTCAGAACACGCAACTCAATGTAAACATGTCTTCTGAAAATATATCCAGCGGAGGACTCCAGTCCCTG
GCCTCCTCGCTAGTGAATGTAACGCCCTCACATAATTTCTCCCTCACACCACCGACTCTTTTAAATGCTGCAGAACTGA
GCTCTGGTATCTCCGAGAGCCAGTCCATGTCATCGCCCGTAACCAGTACCTCTACCGTGATATCTATCAGCAACACTAA
CTATGCAACTCTTCAGAACTGCTCCCTCATTACCAGTCAAGATCTGTTGTCCATCTCTACAGCACAGCCCGCGCTTGGA
GAAATCGTTTTTACGACCGGAGACCGTGTGAGCCACCCATCTGCACAGCTACACCAGGATTTTGTCCGAGAGCACAGGT
TGGTTCTGCAAGCTGTACCAGACATCAAAGAGAATTTCTTGCCTAATTCGGAAAGCAAATCAACCGGCAGTTTAATGAT
GCTGGATTCGAAATCCAAGTATGTTATGAGTAACATGGTTGACACGGTTTGTGAAGAGCTGGACACGGACAAAAAGGAA
CTTGCCAAACTGCAGACAGTTCAGATGGATGAAGATATGCAAGACTTATAATTTTTTTTTTCTTGCTTTCTGTTTCGGT
AGATAAGACTCCCGTCGAGGCCCTAAGAAGCACCAAGTGGAGTGGGTTTTTTGTTGTTGCTTTTTTAAAGAAAACAGAA
GAACACTTAAATGGTCTGAATCGATGTACAGAGGAATCTCTGGCAACGGGTCTCGGGTTGCCACACTTGGTTTGCATGC
AGTATTCTCTTTTAAGCAGATTAAAGGAGAAAGGAAACGCCAGGGGAAGTACCGAGCAAATGGGTACAGGTTTGGCTAC
TGCTACTGCGCTGATAATGTAACTAGATTCTCTGTAGTGCAACGTACTATCAACAGTAAGTATACACTCCTAACAGTAG
ATAGAAAGCAAAAATCTCGCTCTGGAAAGGTAGAAACCATGCAGTTGTTTTCGCTGTTTACTTCTAGTCCGTGGGCATT
GAAAAGTTTTTTAAGAACTCTATAGACGATACCTCACAGGCTACTTTTGTGTTGTTGGAGGTTAAGAAACAAAACGAAA
CCCTAATGTTGTTACTGGTGTGTTTGCTGTTTGTTTTTTTTTCCAGCAGACTTGCCTTCATACCAAAAATCTCGCATCA
AACATTGACAGGTTTCAAAGTGCTGCAGATAGCATTTTGTCAGTGCACCAGAAAAAGCATCATCTGAAACTCTAATTAT
GCAACTTGGAAGCTTTCTCTCCAGTATGAATGTAAATATTGTTTCAGTTCTTATAAAGGAGACTTTTTTTTTTTTTTTT
AATTAGTACGATGGATTTTATTTATGGTTTATGTTCCCTTTCACTTTAGACACAATGCATTGGAAAGGAAAACGTTTTC
TGGCTGTTTAATTTATTTTTATTGTTTGAGCAGGAAGTAAACGTAGTTATTTCTGACAAGGTTTTACTTTTTTGTAGGC
TTTCAAGCAATAGACTGTAAAAGTAAAATGTTAATCACACTGAAACTAGAAAATGAGCTCCCAGTCTCACAAACCCAGG
AGGTCCCTGTCTCTACCCCCTCTGTCTTTGCGTTCAGGGGTTTTTTGTTTGTTTTGTTAGTAATTTGCAAATTAGTTGA
ACCTTTTTTCTTGGTGTATTTTTTACGGAATTCCATGTGCCTTTCTTCCTAGTGGCCTTATCTTTGTTACTAAAGCACA
GTGGCAGGAGGAATAAAAACACACTGACTTGCAAATCTCCGTCCTCAGGGCTGAATCCTGATGCCTTACTTTTGCAAGT
AGCCCTGCTGACCCCGGAGTCCCTACTTGCACGAGTAAGAAGAGTTGAGTCTTTTGGAAGAGCTGAGTCTTTTGGTCAC
GCTGGGTGACACTGAGTGGTGGTGCAGGGACCTGGAGGCAGAAGGATTGTGCCGAGGGACCACGTGCAGAGCAGTGCAG
AGCAGTGCAGGAGGGAAGATCTTGGCTCTGGCCTCGGTCTGATGAGTGTGGAAGGTTGGTGGGCAGGCCAGGGAAGGGA
GTCCCATGTTTCCCCACAGCCGTTGGCCCAGCAGCTCTTGTGGGAGGGCTTCAGCTGCTGTTGAGCAAGCAGGCCCCCA
TCCAGGAGTGCACTTAAGCATGGATTTATAAATCCTTCCAGAATAAGCAGCGCGGGGGCCAGTGGTGGGAACTGCAGCT
GCCCAGAAGATCCATGGAGCAGCCCAGCTCCCTGCCTGCCTGGGGATGGGTGTCCTCTCCCTTCACCCCTCTGCTCTCC
TTCAGGGACAGCATAGGTAGGCAGGCTGTGGGCAGGTGGAAAAGACCTTACCTTTCCTCCAGAGAAACTTTTGTAGCGT
GGAAAAGCACATCCTTAAGCTTTAAAATAATAATAATAATGCAGATGTATAAAAATGACATGCTGTTTATCTTTGTGTT
TCTGTTTTGTTTTTATTTCTTATTCTAATGTGAATATATACAGTAGCTAAGGCATGTATTCATCCTCGTCAGGGGCATG
GGCTGAAGCCTTTGGAAGACAATGGGAAATTTTTTCCTAAACTTCTGTGGGCTCCACACCAGGCCCAACCCAAAATCAC
TTGGGCAAAAAGAGTGGACAGGAAAGTGAATAGAGAGAGCACATCCCAGTCTGTTTCTGTCTTGGTTATTACCTGGTTC
AGTGGAAAGCCTTTAAGGAATGAAGGTTTCTCCTGTATGGCACAGACATCCTTGCTGTTGTTTTGCACTATATTGAATG
CAGCATGTTTTGCAAGGCAGTGTGTGAAACCTCAGAGCTGAGCTCTGCTGGTAAATGCTGTTTACACTGCAAGCTGGAG
TTCTGAATGTTGCAGGGAAAAGTGCAGGGGAAGGGAAGAGCAGGCGTGCGAGGCTTGCACTTTGCAGCTGCAGGGAGTC
CCTGGTGCTTTGCAAGCAGGAGCAGCCCCTGAGCAGTTGGCTGTCCCCATGTGCACCCGAACAAAAAGGGTGTTTAAGG
CAAGTGCTTTAATGTGGAGATTATCGCAAGCAGAGCATGGAGCTATATGTTCCCTGGCACAACTTCTCTTGGCATTCGG
GGGATCTCCATGTGAGCAGGGAATCGGATGGTGCAGAACTCTGCTCCAGTGGTGTATCTGAGTGCCTTGCTGGGCTCCA
GCATGAACAGTTTGTTTTCCACCTCTCCTTCACCCTCAAAACAAAGATGATGATTATGATAATAGTGTCTGTATCTGAT
CTGCATGAATTGCTCAACTTCTTGGAAAAAGAAGGATCCTGTATTGTTGTATTAATGGAGAACGTATGCACAGAGCAGG
AGCTCTGTAGCTCTGGGGGAGTTGTTCGGGGCTTAGTGTTTGGTTTGTGAAGCTCAGACTGTTTCTAGAGGCAAGCTAG
AGAATATTTCAGAGCCCTCCGTCAGTTGTTGAACTCATCAGGTCCCATAACTGAAAAGACTGTGGTGTCATGCCAGTAC
ATGTTACTTTTTTTCTCTCCTCCCTTGCATTTGTGGTGTTACTGAGGCTCTGAATGCCATGGCTTTGCAGCACAGTTGA
TGTGAAAACTGTGTATGCTGTTACAGTGGTGCGTATCTCGGGGTGCCTGGTACTTCTAATAGGAGACCTCCCGTTCTTT
CGTGGGAGCGGAGGATGTATATAAAAGCAGTGGTTTGGGACAAAGTAAGATTAATCTATTCATCTTCCAGGTATCAAGT
AACTTATTTCGTTATTATGTTTTACTCTTTCTTTCTCCCACTGAAAATAAGTGTCATTCCCTCCAGATGATGTAGTTAG
AACCTCATATGTTTTTTGCAGGTACATATGCACAATATAAAGACTCGTTGCACGGTACAGTGTTTCTAAAATAGATATT
TAAATAGTAGTTTTACTCCTACTGTAAATTAAGGGTTGGTTTTTATTATGTGGCCCTCAAGCGAGAAGGCTGACTGCTC
TACGTAGACAGGACACAAAGCCCCATCGAGCATCTGGGGCCAGATCTTCAGCTGCTGTAAATAAGGCATTGCTCCACTG
TTTCCCAACTGAAGATTTTACATGGTGTTCAGGGGGTACGGATGCTCATCTCCCACAGATACCGATGGCAGTGAGCATC
TGAACCTCACGGACGGTCCTTACTCTCACGTTCTGTTGTTTCAATGGAAGATAAGTCTATCCAGCACAACTACTACTTC
TCCCTCCCAGCTGTGGATGAGAATAAAGGATCATTTCAACTTCACCTATGTTTGTAACTTATAAGTCCACTGGAAATCT
TACAGGAAACGTTGCCAAATTCTACTGCTTTTCTGGTCCCAGACTCAGCTTTGAAAAATACGCTTAAAGTTTAAGCAAA
TTCCTATAAAGCATGAGTGCTAAAAAAACAAACAGAAATAACTTTATTCTTCACTACCTTTAATTAAAGCTGCCTCTAT
TTCACCAGACTTTCGCAGAGAACCAGAAACATACTGAATCAAATGCTCTGTCTGGACTAATGTGCAGCATTATTCCTGT
GGTCGTACTTAATTGGACATTTCAGCCACATCAGTCGTGGACGCCTATCGGCCAGGTCCTTGGCTGGGATAAACGAGCA
CAGTTCACTGACTTTTCGTGTCATTTCACACCAGCTGAGAATGTGGTCCATTCATTTCACTGGAGCTGGATCGGGGATG
GATTTGGCCCAGTTTGCAGTGACACTACGAACCGGTTCACAAGGCCGATGCTCAGACAGTTGCATTGAACGGCACCAAT
CTATCCATCCAAGCAAAATACCTCTTTCCGTTTATCTCTTCACCCTGCCTGTGGATTCAGGAAGATGCGTTTAGAAAGC
TGTTTTCCCTAGAAGTAAGGCTGGAACCGTCTTTATTGTTGTTATCCTTATGAGATCAATGACAACAATGGATGGATTC
ACGGAAACGATTTGCAGTTAAATGAAGCAAGGCAGAATTTGGCCCCGCGTGCACAGGAACTTTTCCTGTATGTAGATTT
CCAGCACCTGTGCACTTTTCTTAACGAGGACAGACAAACAGCCAACAGGGCACATCCCTCCAGCTCTGCATGAAACAGA
CATGCAGGGTCCCGGGGCATGGAGCCTATGCTGGCTGTGGTCCGGCAGCATCTCAAATCACAAAAA
CitationLitsiou A, Hanson S, Streit A. A balance of FGF, BMP and WNT signalling positions the future placode territory in the head. Development. 2005 Sep;132(18):4051-62. Epub 2005 Aug 10
CopyrightAuthors hold the copyright. Published by the Company of Biologists Ltd.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI XM_003641442.2
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 6
Early Endoderm
Early Mesoderm
Neural Crest
 
7-8
stage 7
stage 7
stage 7
stage 7
stage 8
stage 8
Early Endoderm
Early Mesoderm
Head Mesenchyme
Neural Crest
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.334

Mouse

Emage
Eurexpress
MGI GXD

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
Home | Contact
     
© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona