GEISHA - A Chicken Embryo Gene Expression Database
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FOXF1
forkhead box F1

The human orthologue of this gene is associated
with the following human disease:
Gene
Official SymbolFOXF1
Official Full Nameforkhead box F1
CGNC ID49408
also known asforkhead box protein F1|forkhead transcription factor
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNAXM_414186
PolypeptideXP_414186
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.356
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly38766FBgn0045759
Human2294MIM:265380MIM:601089
Mouse15227ENSMUSG00000042812All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2) MGI:1347470
Xenopus734087, 399398, 735218478921
Zebrafish566407ENSDARG00000015399ZDB-GENE-050419-153ZFIN:ZDB-GENE-050419-153
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395624
Ensembl GeneENSGALG00000005728
KEGGgga:395624

Entry 1

GEISHA IdFOXF1.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerGCTGGAAAAACTCCGTTCGC
Reverse cDNA Template PrimerATTAACCCTCACTAAAGGGCTTGATGTCCTGGTATGTCACTTGcDNA Template Length846
Forward cDNA Template Probeshow
AACATGGTGGTGCTGNTGGGGTATAGGACCGCTGCCCGCTGATGCATGGAGGAGGAGGCCATGGCGTTGAAAGAGAAGA
CGAATTCCTTTCTGTCGCACATGCTCGGAGACTGGGAGTGATACCGCGGGATGCCTTGAAGCTCGGCGGTGTTGTGGCT
GTTCTGATGCAGGTAGGGCTGATCGAGGGAATGCGTGGAAAGGCTGGAGGACAGCGGGTTGGCCGCGGGGTTGCAAGGC
GACAGCGGCTGCTGCTTGATGTAGGAAGCTCCCGTGTTTAAGGCGGCCGAGGCGGAGGGAGCCCACGCAGAGGCCGAGC
TGGAGTAAACCGAGTGCGGTTCCATCACCCCTCCGCCGGGCAGCAGCGGGGAGGCGGGCACGGAGCTCTCGTGGTGCGG
GTAATCCCCCGCCGAGGAGCCGCTGCAGCTGCCCATGTAGGAGTGCCCGCCGTTGGAGGGCAGGTGGGGCACGGAGTGT
CCCGCAAGGCCCATCCCGTCCACGTTGCCGGCTAAGTGGCCGTTCATCATGCCCAAACCCCCTTCAAGGGAGAGGCTGT
TGGGAGGGCAGGATAACCCTCCGGCCCCACCCCTGGTATCCTATAACTGTTCGGGAGGTTTTTTAAATTAACCCCATTT
ATCTAACTATACGTGGGCTTTCCCCCCTGTTATTTCCTTTCGAATTTTACTCTCCGGGAGTAAAAACATCCCCTAAAAA
AAATAACTCTGCTGTCTTGGTCAGAGGGTGGTTTCCCCCACTTAGCAGAGCCGGCCCACCTGTTCGTATTACTAAATAA
TTCTTCATTAAGAGACAGTGGCGCCTTAGAAGATTCATAAAAAAAACNNNNNNNCCTTCTCTCCTTGCACACTCTTTCC
TCTGCATGATACCCTTCTTTAGACCTATCCCCTATTCCGTGTTTCCATTTTTCTCTTCTTGTACCCAACCTCTGTCTTT
GCTTTATGCATCCGATACCCTTCCGATTTTACGCTTATGTCTCATTCTTATACACTACCCCTGTGACGCCGTATATATA
TTACCTTTTCGTAATCTCTTACGCACCTTTATTTTTTCATTATTTTCATTCCAGCGCATACAATTCCTGTAATTTTAAT
AGCCAATTGTGTAGAATTTCTCCTGAGCATGCCTTCCCCTTGGAAATACTCATTTTTATCGTAACTCAACGCATCCTTT
CCCCTTACGTACAGCTTCCACGCGTACTCAGACTCAACGCTGCCTTACGACTTGTACACCTTACATAACTTAGGTGTAA
TTAGCTCCTATACCCTCATCGGCGAGCTTGATTGCTCCTCCTGCTCTTACTCCCTATTTCTCTCGGCGCATACTATCTC
AATATATATCTCCTTAGCGCGCTTTCACATAACCTTTCAATTGTTATACTAGTATCCGGCGACTAAGATCTACCAATAG
ATATTCGTGCAACCATATGTCACTGATAGAACGA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 7
stage 8
stage 9
stage 9
stage 10
Blood Islands
Blood Vessels
Endoderm
Extraembryonic
Headfold
Lateral Plate Mesoderm
Oral Pharynx
 
13-18
stage 16
stage 16
stage 18
stage 18
Endoderm
Gut
Lateral Plate Mesoderm
Oral Pharynx
Pharyngeal Arches and Clefts
Sclerotome
Dorsal view.
Ventral view.
19-24
stage 22
stage 22
stage 22
stage 23
Allantois
Endoderm
Gut
Oral Pharynx
Sclerotome
Section taken between the limbs.
25
stage 25
stage 25
stage 25
stage 25
Gut
Oral Pharynx
Sclerotome
 

Entry 2

GEISHA IdFOXF1.Wilm.2004Data SourcePublication
Complete cDNA Template Probeshow
ATGGAGATCGGTAATGGAGGGATCCAGGCGGGGCCGGGCGGGGTGCGGACGCAGGGAAGCCCCTCGCTGTCCCCGTTTC
TCTCCAGGGCACGTCGGGGAAATGGAGGTGATTCCCAGCGCTCGAAAGGCTCGGAGGAGCGAAATGTTTTGCAGGCACC
GAAGTTCCCGTGTTACCTCTCACCCACCGGAATCGAGATCTACCAGTTCTTATAGAGCCGCTTCCCTTTCTTCCGCGGT
TCTTACCAGGGCTGGAAAAACTCCGTTCGCCACAACCTCTCGCTCAACGAGTGTTTCATTAAGCTGCCCAAGGGGTTGG
GCCGCCCGGGTAAGGGCCACTACTGGACCATCGACCCGGCCAGCGAGTTCATGTTCGAGGAGGGCTCGTTCCGCCGCCG
GCCCCGAGGCTTCAGGAGGAAATGCCAGGCGCTGAAGCCCATGTACAGCATGATGAACGGGCTCAGCTTCAACCACCTC
CCCGACAGCTACAGCTTCCAGGGCTCGGCCGGAGGGCTCTCCTGCCCTCCCAACAGCCTCTCTCTCGAAGGGGGTTTGG
GCATGATGAACGGCCACTTAGCCGGCAACGTGGACGGGATGGGCCTTGCGGGACACTCCGTGCCCCACCTGCCCTCCAA
CGGCGGGCACTCCTACATGGGCAGCTGCAGCGGCTCCTCGGCGGGGGATTACCCGCACCACGAGAGCTCCGTGCCCGCC
TCCCCGCTGCTGCCCGGCGGAGGGGTGATGGAACCGCACTCGGTTTACTCCAGCTCGGCCTCTGCGTGGGCTCCCTCCG
CCTCGGCCGCCTTAAACACGGGAGCTTCCTACATCAAGCAGCAGCCGCTGTCGCCTTGCAACCCCGCGGCCAACCCGCT
GTCCTCCAGCCTTTCCACGCATTCCCTCGATCAGCCCTACCTGCATCAGAACAGCCACAACACCGCCGAGCTTCAAGGC
ATCCCGCGGTATCACTCCCAGTCTCCGAGCATGTGCGACAGAAAGGAATTCGTCTTCTCTTTCAACGCCATGGCCTCCT
CCTCCATGCATTCAGCGGGCAGCGGCTCCTATTACCACCAACAAGTGACATACCAGGACATCAAGCCGTGCGTTATGTG
A
CitationWilm B, James RG, Schultheiss TM, Hogan BL (2004). The forkhead genes, Foxc1 and Foxc2, regulate paraxial versus intermediate mesoderm cell fate. Dev Biol. 2004 Jul 1;271(1):176-89.
CopyrightCopyright © 2004 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_414186).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-34
stage 34
Lateral Plate Mesoderm
Somatic Mesoderm
Splanchnic Mesoderm
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.356

Mouse

EmageMGI:1347470
EurexpressMGI:1347470
MGI GXDMGI:1347470

Frog

Xenbase478921

Fruit Fly

BDGPFBgn0045759

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-050419-153
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