GEISHA - A Chicken Embryo Gene Expression Database
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ATF4
activating transcription factor 4

Gene
Official SymbolATF4
Official Full Nameactivating transcription factor 4
CGNC ID9204
also known ascyclic AMP-dependent transcription factor ATF-4|activating transcription factor 4 (tax-responsive enhancer element B67), activating transcription factor 4 , tax-responsive enhancer element B67
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Sequence Information
Genomic
RNANM_204880
PolypeptideNP_990211
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human468ENSG00000128272MIM:604064
Mouse11911ENSMUSG00000042406All phenotypic alleles (5):Targeted, knock-out(4) Targeted, other(1) MGI:88096
Xenopus448005, 398804, 734165983840
Zebrafish406514, 556410ENSDARG00000039515, ENSDARG00000038141ZDB-GENE-040426-2340, ZDB-GENE-070928-23ZFIN:ZDB-GENE-040426-2340, ZFIN:ZDB-GENE-070928-23
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395693
Ensembl GeneENSGALG00000012135
KEGGgga:395693

Entry 1

GEISHA IdK37Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GGCTAACTAGTTGTGGTCCTGGTCGTGCGTAGCACCTCTCTGCGCGGCGCTGACCGGAGCACACCACCCCCAAACCTCC
CCCTCCCCCCCCCTAGCCGCCATGGCTCTCTAAGGGCGGCAGGGCCAGCGGCGGCATCGGCCAGTGCAGCGGGCGCAGC
AGCAGCGGCGGCGGCCTCGGCACATCCCCGGCATCTGCAACCATGGCGTTTTTCAAGGCACCGCACAGCAGCACTGCTG
TAGTCGACAAAAAGACCCTCTCCTTGTCTACATCCTTTGACGTCAAAGCACTAAAACCTGACCAAGATGAGCCTCTTGA
ACAACGAGATGCTGTTGGGGGAGTCCTCCCCCTTCAGCCAGCCGTGTTCGGTGGCTGAGGAAAGTCTGGGACTCCTCGA
TGACTACCTGGAGGTGGCCGAGCCCCTCGGTTCGCATGGGTTCTCCAGCGACAAGGCT
Commentsstages 13, 14, 15 negative
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
Mesoderm
 
7-12
stage 10
Lateral Plate Mesoderm
Neural Plate/Tube
 
13-18
stage 16
Hindbrain
 
19-22
stage 22
Allantois
Leg Mesenchyme
Mesoderm
Pharyngeal Arches and Clefts
Somatopleure
Wing Mesenchyme
 

Entry 2

GEISHA IdATF4.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerTTATAAAAGCTTGCGGCCGCAGAATATGTTGTGGTCCTGGTCGTGCGT
Reverse cDNA Template PrimerGCTCTAGAAATTAACCCTCACTAAAGGGCGGCATCTGTAGGGAACGGGcDNA Template Length1049
Forward cDNA Template Probeshow
GCCCTCCACAGGGGTCTAGGTTGGACGCAAGAGCCCAGGCGGCATCTGTAGGGAACGGGTTGTCATTGGGTGATCCAAG
TGAATTGGTAGGACTATGTTGGGGTGTTCCCAAATAAGAGTCTGGGCTCATGCATATTCCACTATCATCGGAATGGTTC
TCCTCCTCTTTCTCTGACTTGGTGATCACTACCAGAAAGGTGGGGCCCTCCTGTTTCCTTTCACCTTCCAGAACATCCA
CTTCACTACCTAGTTCTAAACTAAATGAATGGTCTGGAACAGAAGTCAGAGACCCTGGGGAGAGGGGAAAAGACCAGAG
GGAAGATAAAGGGGCCATGGGATCTGCTCCAATTGGAGATTCAGGGAGATTGGTGATTAGATCAGGTATGAGTGGAGGT
TCTTTGTTGTGAAATTCCTGGGTGGTAGGGTTAAATAGGAGATCACACGTGTCTTCCAACGTGGCCATCAGCTCGTCTG
GTGAGACGGTGGCTTCCAGATGTTCCATACCTAACAGGGCATCAAAATCAAATTCCTTCAGATCCATCTTCTCCACCAT
CCACTCCATGCCAGAGAAGGCATCCTCCTGGCTGCTATCTATGGTGTTGCCTAAACTGTCCACAGCGAGCCAATTGGAG
GAGACTGCCTTAGCCTTGTCGCTGGAGAACCCATGCGAACCGAGGGGCTCGGCCACCTCCAGGTAGTCATCGAGGAGTC
CCAGACTTTCCTCAGCCACCGAACACGGCTGGCTGAAAGGGGAGGACTCCCCCAACAGCATCTCGTTGTTCAAGAGGCT
CATCTGTTTAAGGTTTTTAAAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
stage 6
Early Mesoderm
Extraembryonic Mesoderm
Hensen's Node
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
 
7-12
stage 7
stage 8
stage 9
stage 11
stage 12
Anterior Intestinal Portal
Extraembryonic Mesoderm
Headfold
Heart Tube
Hensen's Node
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Somites
Widespread Expression
 
13-18
stage 13
stage 18
Widespread Expression
 
19-24
stage 23
Widespread Expression
 
25
stage 25
Widespread Expression
 

Mouse

EmageMGI:88096
MGI GXDMGI:88096

Frog

Xenbase983840

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-040426-2340, ZDB-GENE-070928-23
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