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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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PGK1
phosphoglycerate kinase 1

The human orthologue of this gene is associated
with the following human disease:

Phosphoglycerate kinase 1 deficiency

Gene

Official Symbol	PGK1
Official Full Name	phosphoglycerate kinase 1
CGNC ID	49503
also known as	PGK, PGK2, phosphoglycerate kinase\|phosphoglycerate kinase 2, Phosphoglycerate kinase
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_204985
Polypeptide	NP_990316

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	33461			FBgn0250906
Human	5230		MIM:311800	MIM:311800
Mouse	18655	ENSMUSG00000062070		MGI:97555
Xenopus	549299, 446763			947125
Zebrafish	406696	ENSDARG00000054191	ZDB-GENE-040426-2711	ZFIN:ZDB-GENE-040426-2711

Gene Ontology

Molecular Function	ATP binding, phosphoglycerate kinase activity
Biological Process	carbohydrate metabolic process, gluconeogenesis, glycolysis, phosphorylation, more...small molecule metabolic process
Cellular Component	chromosome, cytosol

Links to other databases

Entrez Gene	395833
Ensembl Gene
KEGG	gga:395833

Entry 1

GEISHA Id	Z12	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GCGGCGGTAGGGAACGGACGGCAGCGGTGACTTGCGGTAACCATGTCTCTCTCCAACAAGCTCACCCTGGATAAGGTGG ATGTGAAGGGCAAGCGGGTCGTCATGAGGGTTGACTTCAATGTTCCAATGAAGGATCACAAAATAACCAACAACCAAAG AATCAAGGCAGCTGTCCCTACCATCAAGCACTGCTTGGACCATGGAGCCAAGTCAGTGGTTTTGATGAGTCACCTGGGC CGCCCGGATGGAGTTCCCATGCCTGACAAGTTCTCCTTGGCTCCAGTAGCTGTGGAGCTTAAAGCTCTCCTGGGCAGGG AGGTCTCATTCCTGAAGGATTGTGTTGGTCCTGAGGTGGAGAAGGCCTGTGCTAATCCTGCAAACGGCTCCGTCATCCT GCTAGAGAACCTCCGATTCCATGTAGAAGAAGAAGGGAAAGGGAAGGATGCTTCANGGAACAAGATCAAAGCTGATGCT GCAAAAGTGGAGGCTTTCAGAGCCTCTCTTTCTAAATTGGGAGATGTTTATGTCAATGATGCTTTTGGAACTGCCCATC GTGCTCACAGCTCCA
Comments	Widespread expression stages 4-25.

Stage

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Location (click to highlight)

Comments (click to highlight)

7-8

stage 8

Widespread Expression

maybe not in notochord or floor plate

Entry 2

GEISHA Id	PGK.21A6	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show CAGCGGTGACTTGCGGTAACCATGTCTCTCTCCAACAAGCTCACCCTGGATAAGGTGGATGTGAAGGGCAAGCGGGTCG TCATGAGGGTTGACTTCAATGTTCCAATGAAGGATCACAAAATAACCAACAACCAAAGAATCAAGGCAGCTGTCCCTAC CATCAAGCACTGCTTGGACCATGGAGCCAAGTCAGTGGTTTTGATGAGTCACCTGGGCCGCCCGGATGGAGTTCCCATG CCTGACAAGTTCTCCTTGGCTCCAGTAGCTGTGGAGCTTAAAGCTCTCCTGGGCAGGGAGGTCTCATTCCTGAAGGATT GTGTTGGTCCTGAGGTGGAGAAGGCCTGTGCTAATCCTGCAAACGGCTCCGTCATCCTGCTAGAGAACCTCCGATTCCA TGTAGAAGAAGAAGGGAAAGGGAAGGATGCTTCAGGGAACAAGATCAAAGCTGATGCTGCAAAAGTGGAGGCTTTCAGA GCCTCTCTTTCTAAATTGGGAGATGTTTATGTCAATGATGCTTTTGGAACTGCCCATCGTGCTCACAGCTCCATGGTAG GTGTTCATCTTCCTCAGAAGGCTGCTGGCTTCCTGATGAAGAAAGAACTGGATTATTTTGCAAAGGCCCTTGAGAGTCC AGAGAGACCCTTCTTAGCAATTCTTGGAGGAGCTAAAGTTCAGGATAAGATCCAGCTGATCAGTAACATGTTAGATAAG GTCAACGAGATGATCATTGGTGGTGGAATGGCATTCACCTTTCTCAAAGTGTTAAACAACATGCAGATTGGCAACTCGC TGTTTGATGAAGAGGGATCAAAAATTGTCAAGGACCTGATGGCCCAAGCAGAGAAGAACGGTGTGAAGATAACCTTGCC AATTGAACTCATCACTGCAGACAAATTTGATGAGCATGCACAGACTGGGGGAGCCACAGTGGCTTCAGGCATTCCTGCT TGCTGGATGGGCCTGAACTGCGCCCCTAAAATGTTTAAAAATTTTGTGTAAATTGTGGGAAGGGCAAACAAATANTGGT GAACGTTCCGTTTGAATCTTTAATGGGACAAGTCCCCAAGGAACAAAGCCCTGAGGAAAAATGGGGAATTAATGGAAGG GCGGCCCCATATTTGGGGGGGAAACCGCACCTCCTTGCGATGGAATACTAAATAATTTCCCCTTACCTG
Comments	no specific expression detected stages 4-25, widespread.

Stage

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Location (click to highlight)

Comments (click to highlight)

19-20

stage 20

Widespread Expression

not in yolk stalk

Entry 3

GEISHA Id	PGK.Adams.2008	Data Source	Publication
Complete cDNA Template Probe	show ACCAAAACCTCCCCAGTTCACGAGCAGCATCGCCAAGCGTCAGAGCGCGGGCGGCGGCGGTAGGGAACGGACGGCAGCG GTGACTTGCGGTAACCATGTCTCTCTCCAACAAGCTCACCCTGGATAAGGTGGATGTGAAGGGCAAGCGGGTCGTCATG AGGGTTGACTTCAATGTTCCAATGAAGGATCACAAAATAACCAACAACCAAAGAATCAAGGCAGCTGTCCCTACCATCA AGCACTGCTTGGACCATGGAGCCAAGTCAGTGGTTTTGATGAGTCACCTGGGCCGCCCGGATGGAGTTCCCATGCCTGA CAAGTTCTCCTTTTCTCCAGTAGCTGTGGAGCTTAAAGCTCTCCTGGGCAGGGAGGTCTCATTCCTGAAGGATTGTGTT GGTCCTGAGGTGGAGAAGGCCTGTGCTAATCCTGCAAACGGCTCCGTCATCCTGCTAGAGAACCTCCGATTCCATGTAG AAGAAGAAGGGAAAGGGAAGGATGCTTCAGGGAACAAGATCAAAGCTGATGCTGCAAAAGTGGAGGCTTTCAGAGCCTC TCTTTCTAAATTGGGAGATGTTTATGTCAATGATGCTTTTGGAACTGCCCATCGTGCTCACAGCTCCATGGTAGGTGTT CATCTTCCTCAGAAGGCTGCTGGCTTCCTGATGAAGAAAGAACTGGATTATTTTGCAAAGGCCCTTGAGAGTCCAGAGA GACCCTTCTTAGCAATTCTTGGAGGAGCTAAAGTTCAGGATAAGATCCAGCTGATCAGTAACATGTTAGATAAGGTCAA CGAGATGATCATTGGTGGTGGAATGGCATTCACCTTTCTCAAAGTGTTAAACAACATGCAGATTGGCAACTCGCTGTTT GATGAAGAGGGATCAAAAATTGTCAAGGACCTGATGGCCAAGGCAGAGAAGAACGGTGTGAAGATTACCTTGCCAGTTG ACTTCATCACTGCAGACAAATTTGATGAGCATGCACAGACTGGGGAAGCCACAGTGGCTTCAGGCATTCCTGCTGGCTG GATGGGCTTGGACTGCGGCCCTGAAAGTGTTAAGAAGTTTGTTGAAGTTGTGGGAAGGGCCAAACAAATAGTGTGGAAC GGTCCAGTTGGAGTCTTTGAATGGGACAAGTTCTCCAAAGGAACCAAAGCCCTGATGGACAAAGTGGTGGAAGTAACTG GAAAGGGCTGCATCACCATTATTGGTGGTGGAGATACTGCTACATGCTGTGCGAAGTGGAATACTGAAGATAAAGTTAG CCACGTTAGCACTGGAGGTGGTGCCAGCCTGGAACTGCTAGAGGGTAAGGTTCTTCCTGGCGTGGATGCCTTGAGCAGT GTGTAGAGAACAGCGTATCACCCCAGTTCCTGTTCCTGTGCACAGCCCCTGAGATTCAACACTTCAACACTTCTATGCT TCTGTATTTCAACTCTGCGATAGGCAGACCG
Citation	Adams MS, Gammill LS, Bronner-Fraser M. Discovery of transcription factors and other candidate regulators of neural crest development. Dev Dyn. 2008 Apr;237(4):1021-33.
Copyright	Copyright © 2008 Wiley-Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204985).