GEISHA - A Chicken Embryo Gene Expression Database
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EFNB1
ephrin B1

The human orthologue of this gene is associated
with the following human disease:
Gene
Official SymbolEFNB1
Official Full Nameephrin B1
CGNC ID49538
also known asephrin-B1|CEK5 ligand|CEK5-L, Ephrin-B1 precursor , CEK5 ligand, CEL5-L
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_205035
PolypeptideNP_990366
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.2142
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human1947ENSG00000090776MIM:304110MIM:300035
Mouse13641ENSMUSG00000031217All phenotypic alleles (15):Targeted, knock-out(3) Targeted, other(12) MGI:102708
Xenopus100494328, 3942921011782
Zebrafish114377ENSDARG00000007723ZDB-GENE-010618-2ZFIN:ZDB-GENE-010618-2
Gene Ontology
Molecular Function
Biological Processcell differentiation, nervous system development
Cellular Componentintegral component of membrane
Links to other databases
Entrez Gene395896
Ensembl Gene
KEGGgga:395896

Entry 1

GEISHA IdEphrinB1Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
AAGCGCTTTGAGTCGTCCGAGCCGCTGCCTGCGAAGGGGAGTAGAGGGGGCGGCACGGCGGGCGGCGGCGCTGTGCGAG
CCGGGACGGCGGAGGGGACGCGCCGGAGCCGCCGTCGAGGCGAGAGGAGGAGCGGGAGGAACAGAAGGAGGAGGGCGGC
GGCGGGGCGCTGCCCGCGGGCTGCGCGGCGCCGATGCGGGGCTGAGGAGCGGAGAGCCCCGCGGCATGGGCGCCTGACG
CCCGGTGCCGTCCCGCCGCCGAGGGACGATGGCGCGGCCCCGCGGCGGGCGGTGGCTGCTGGGGGTGCTGCTCGCCCTG
TGCCGCCTGGCCGCGCCGCTCGCCAAGAGCCTGGAGCCCGTCTCTTGGAGCGCCGGCAACCCCAAATTCATGAGTGGGA
AAGGGTTGGTCATCTACCCGGAGATTGGGGACAAACTGGACATTATCTGCCCCAAGGCGGAGCCGTCCAAGCCTTACGA
TTACTACAAGCTGTACCTGGTGAAAAAGGACCAGGCAGATGCCTGCAGCACCGTCATGGACCCCAACGTGCTGGTGACG
TGCAACCGGCCCGAGCAGGAGATCCGCTTCACCATCAAGTTTCAGGAGTTCAGCCCCAACTACATGGGCCTGGAGTTCA
AGCGGCAGCAGGATTACTTCATCACATCCACCTCTAATGGGACACTGGATGGCCTGGAGAACCGGGAAGGAGGGGTCTG
CCAGACACGCTCCATGAAGATCGTCATGAAAGTGGGGCAGGATCCAAACGCGGTGATCCCGGAGCAGCTGACGACGAGT
CGGCCCAGCAAGGAGGCAGACAACACCGTGAAGATTGTGACGCAGAGCCCACGCCACAAAGTCCCCACGGTGGAGGAGC
CCGGCAAGCCAGGTTCCGTCAACCAGAACGGCCAGGAGACCCAAGGTCCCAGCGATGGGTTCCTGAGCTCCAAAGTCGC
CGTTTTCGCTGCCATCGGCGCGGGCTGCGTCATCTTCATCCTCATCATCATCTTCCTCGTCGTCCTCCTGATCAAGATC
CGCAAGCGGCACCGGAAGCACACGCAGCAGCGGGCCGCAGCCTTGTCCCTCAGCACCTTGGCCAGCCCCAAATGCAGCG
GGAACGCCGGCTCAGAGCCCAGCGACATCATCATCCCCTTACGGACTACAGAGAACAACTACTGCCCGCACTACGAGAA
GGTGAGCGGGGACTACGGGCACCCCGTCTACATCGTGCAGGAGATGCCCCCACAGAGCCCAGCCAACATTTACTACAAG
GTGTGAGGAGCAGCCTGGGCACGCCACGCAGGAGCGCCCGGTGGGGCCGGCAGCGGGAGGCAGCGTGCCCGGCCACGGC
ACGGCACGGCGCGGGAGCACAGGGGTCTGGCGCCCGTGCGCTGCCTCTCCCCCTTTGTATTTAGTTTTGTAGTTCTCAG
CTTTTGTAATCCCAAGACTTTGAGGGTGAGCTGCCAGCATCCTCCTCTCCTGCTCCGGACTGCGGCTGCAGCGCGCACT
CTGCCTTCCCGCGCCCGCCTGCACGCCGCCGGCACCCGCGGACTCCCACCTCCCCTTCTGCACTTTGGGATTTCCCCTC
GCCGCCTCCACGCCAAGTGCCCGTGCAGGGGCCCGGGAGCTGCGACGGATGCCGAGAGGAGCAGCGAGGAGCCCTGGGA
GGAGGAGGATGCTTCGCCCAGGTGCCGAGACGCAGAGAACTGTGCAGGGAGGAAGCTGGCAAACCCGATTTACTACTAC
TACTATTATTATTATTATAATTATTTTAATTTTTTTGTAACATTTTTATTTTTGTGAGTCGTGGCGGGACCCCCCGCCC
TGGGCACATGCCACAGCCTCCTTCCAGCACGCCGTCCTGCTGGCGCAGGCAGATCCGCCGCTGCCGTTTTAAACTTTTG
TGTTCGTAGCTGTTGACTTTTGTTTTAGTCTCTTTATAAAAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 7
stage 9
stage 10
stage 10
stage 11
stage 12
Anterior Intestinal Portal
Diencephalon
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Primitive Streak
Somites
 
13-18
stage 18
Eye
Midbrain
Pharyngeal Arches and Clefts
Somites
 

Entry 2

GEISHA IdEphrinB1.Baker.2003Data SourcePublication
Complete cDNA Template Probeshow
GACGCCCGGTGCCGTCCCGCCGCCGAGGGACGATGGCGCGGCCCCGCGGCGGGCGGTGGCTGCTGGGGGTGCTGCTCGC
CCTGTGCCGCCTGGCCGCGCCGCTCGCCAAGAGCCTGGAGCCCGTCTCTTGGAGCGCCGGCAACCCCAAATTCATGAGT
GGGAAAGGGTTGGTCATCTACCCGGAGATTGGGGACAAACTGGACATTATCTGCCCCAAGGCGGAGCCGTCCAAGCCTT
ACGATTACTACAAGCTGTACCTGGTGAAAAAGGACCAGGCAGATGCCTGCAGCACCGTCATGGACCCCAACGTGCTGGT
GACGTGCAACCGGCCCGAGCAGGAGATCCGCTTCACCATCAAGTTTCAGGAGTTCAGCCCCAACTACATGGGCCTGGAG
TTCAAGCGGCAGCAGGATTACTTCATCACATCCACCTCTAATGGGACACTGGATGGCCTGGAGAACCGGGAAGGAGGGG
TCTGCCAGACACGCTCCATGAAGATCGTCATGAAAGTGGGGCAGGATCCAAACGCGGTGATCCCGGAGCAGCTGACGAC
GAGTCGGCCCAGCAAGGAGGCAGACAACACCGTGAAGATTGTGACGCAGAGCCCACGCCACAAAGTCCCCACGGTGGAG
GAGCCCGGCAAGCCAGGTTCCGTCAACCAGAACGGCCAGGAGACCCAAGGTCCCAGCGATGGGTTCCTGAGCTCCAAAG
TCGCCGTTTTCGCTGCCATCGGCGCGGGCTGCGTCATCTTCATCCTCATCATCATCTTCCTCGTCGTCCTCCTGATCAA
GATCCGCAAGCGGCACCGGAAGCACACGCAGCAGCGGGCCGCAGCCTTGTCCCTCAGCACCTTGGCCAGCCCCAAATGC
AGCGGGAACGCCGGCTCAGAGCCCAGCGACATCATCATCCCCTTACGGACTACAGAGAACAACTACTGCCCGCACTACG
AGAAGGTGAGCGGGGACTACGGGCACCCCGTCTACATCGTGCAGGAGATGCCCCCACAGAGCCCAGCCAACATTTACTA
CAAGGTGTGAGGAGCAGCCTGGGCACGCCACGCAGGAGCGCCCGGTGGGGCCGGCAGCGGGAGGCAGCGTGCCCGGCCA
CGGCACGGCACGGCGCGGGAGCACAGGGGTCTGGCGCCCGTGCGCTGCCTCTCCCCCTTTGTATTTAGTTTTGTAGTTC
TCAGCTTTTGTAATCCCAAGACTTTGAGGGTGAGCTGCCAGCATCCTCCTCTCCTGCTCCGGACTGCGGCTGCAGCGCG
CACTCTGCCTTCCCGCGCCCGCCTGCACGCCGCCGGCACCCGCGGACTCCCACCTCCCCTTCTGCACTTTGGGATTTCC
CCTCGCCGCCTCCACGCCAAGTGCCCGTGCAGGGGCCCGGGAGCTGCGACGGATGCCGAGAGGAGCAGCGAGGAGCCCT
GGGAGGAGGAGGATGCTTCGCCCAGGTGCCGAGACGCAGAGAACTGTGCAGGGAGGAAGCTGGCAAAC
CitationBaker RK, Antin PB. Ephs and ephrins during early stages of chick embryogenesis Dev Dyn. 2003 Sep;228(1):128-42.
Copyright2003 Wiley-Liss, Inc.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
stage 5
stage 5
stage 6
stage 6
Blood Vessels
Endoderm, early
Extraembryonic
Head Process
Hensen's Node
Lateral Plate Mesoderm
Mesoderm, early
Notochord
Primitive Streak
 
7-12
stage 7
stage 7
stage 8
stage 9
stage 9
stage 9
stage 10
stage 10
stage 10
stage 10
stage 10
stage 10
stage 11
stage 11
stage 12
stage 12
Anterior Intestinal Portal
Aorta
Arteries
Blood Vessels
Cardinal Veins
Cardiovascular
Endoderm
Endoderm, early
Extraembryonic
Forebrain
Foregut
Head Process
Heart Tube
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Rhombomeres
Somites
Spinal Cord
Splanchnic Mesoderm
Tail
Veins
angioblasts

Entry 3

GEISHA Idephrin-B1.Mühleisen.2006Data SourcePublication
Complete cDNA Template Probeshow
AAGCGCTTTGAGTCGTCCGAGCCGCTGCCTGCGAAGGGGAGTAGAGGGGGCGGCACGGCGGGCGGCGGCGCTGTGCGAG
CCGGGACGGCGGAGGGGACGCGCCGGAGCCGCCGTCGAGGCGAGAGGAGGAGCGGGAGGAACAGAAGGAGGAGGGCGGC
GGCGGGGCGCTGCCCGCGGGCTGCGCGGCGCCGATGCGGGGCTGAGGAGCGGAGAGCCCCGCGGCATGGGCGCCTGACG
CCCGGTGCCGTCCCGCCGCCGAGGGACGATGGCGCGGCCCCGCGGCGGGCGGTGGCTGCTGGGGGTGCTGCTCGCCCTG
TGCCGCCTGGCCGCGCCGCTCGCCAAGAGCCTGGAGCCCGTCTCTTGGAGCGCCGGCAACCCCAAATTCATGAGTGGGA
AAGGGTTGGTCATCTACCCGGAGATTGGGGACAAACTGGACATTATCTGCCCCAAGGCGGAGCCGTCCAAGCCTTACGA
TTACTACAAGCTGTACCTGGTGAAAAAGGACCAGGCAGATGCCTGCAGCACCGTCATGGACCCCAACGTGCTGGTGACG
TGCAACCGGCCCGAGCAGGAGATCCGCTTCACCATCAAGTTTCAGGAGTTCAGCCCCAACTACATGGGCCTGGAGTTCA
AGCGGCAGCAGGATTACTTCATCACATCCACCTCTAATGGGACACTGGATGGCCTGGAGAACCGGGAAGGAGGGGTCTG
CCAGACACGCTCCATGAAGATCGTCATGAAAGTGGGGCAGGATCCAAACGCGGTGATCCCGGAGCAGCTGACGACGAGT
CGGCCCAGCAAGGAGGCAGACAACACCGTGAAGATTGTGACGCAGAGCCCACGCCACAAAGTCCCCACGGTGGAGGAGC
CCGGCAAGCCAGGTTCCGTCAACCAGAACGGCCAGGAGACCCAAGGTCCCAGCGATGGGTTCCTGAGCTCCAAAGTCGC
CGTTTTCGCTGCCATCGGCGCGGGCTGCGTCATCTTCATCCTCATCATCATCTTCCTCGTCGTCCTCCTGATCAAGATC
CGCAAGCGGCACCGGAAGCACACGCAGCAGCGGGCCGCAGCCTTGTCCCTCAGCACCTTGGCCAGCCCCAAATGCAGCG
GGAACGCCGGCTCAGAGCCCAGCGACATCATCATCCCCTTACGGACTACAGAGAACAACTACTGCCCGCACTACGAGAA
GGTGAGCGGGGACTACGGGCACCCCGTCTACATCGTGCAGGAGATGCCCCCACAGAGCCCAGCCAACATTTACTACAAG
GTGTGAGGAGCAGCCTGGGCACGCCACGCAGGAGCGCCCGGTGGGGCCGGCAGCGGGAGGCAGCGTGCCCGGCCACGGC
ACGGCACGGCGCGGGAGCACAGGGGTCTGGCGCCCGTGCGCTGCCTCTCCCCCTTTGTATTTAGTTTTGTAGTTCTCAG
CTTTTGTAATCCCAAGACTTTGAGGGTGAGCTGCCAGCATCCTCCTCTCCTGCTCCGGACTGCGGCTGCAGCGCGCACT
CTGCCTTCCCGCGCCCGCCTGCACGCCGCCGGCACCCGCGGACTCCCACCTCCCCTTCTGCACTTTGGGATTTCCCCTC
GCCGCCTCCACGCCAAGTGCCCGTGCAGGGGCCCGGGAGCTGCGACGGATGCCGAGAGGAGCAGCGAGGAGCCCTGGGA
GGAGGAGGATGCTTCGCCCAGGTGCCGAGACGCAGAGAACTGTGCAGGGAGGAAGCTGGCAAACCCGATTTACTACTAC
TACTATTATTATTATTATAATTATTTTAATTTTTTTGTAACATTTTTATTTTTGTGAGTCGTGGCGGGACCCCCCGCCC
TGGGCACATGCCACAGCCTCCTTCCAGCACGCCGTCCTGCTGGCGCAGGCAGATCCGCCGCTGCCGTTTTAAACTTTTG
TGTTCGTAGCTGTTGACTTTTGTTTTAGTCTCTTTATAAAAA
CitationMühleisen TW, Agoston Z, Schulte D. Retroviral misexpression of cVax disturbs retinal ganglion cell axon fasciculation and intraretinal pathfinding in vivo and guidance of nasal ganglion cell axons in vivo. Dev Biol. 2006 Sep 1;297(1):59-73.
CopyrightReprinted from Developmental Biology, Volume 297, Thomas W. Mühleisen, Zsuzsa Agoston and Dorothea Schulte, Retroviral misexpression of cVax disturbs retinal ganglion cell axon fasciculation and intaretinal pathfinding in vivo and guidance of nasal ganglion cell axons in vitro, Pages 56-73, Copyright 2006, with permission from Elsevier. Copyright © 2006 Elsevier B.V. All rights reserved.
CommentsAccording to the authors, "The cDNA clones used to generate in situ probes for EphA3, EphA4, ephrin-A5, ephrin-A2, EphB2, EphB3, ephrin-B1, ephrin-B2 or RCS, which recognizes a viral core protein, were described elsewhere (Schulte et al., 1999) or were gifts from J. Flanagan, C. Cepko (Harvard Medical School, Boston), or E. Pasquale (The Burnham Institute, La Jolla, California; Holash and Pasquale, 1995 and Cheng et al., 1995). As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_205035.)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 15
Eye
Retina
eye cup and neural retina
19-20
stage 20
stage 20
Eye
Retina
eye cup and neural retina

Entry 4

GEISHA IdEPHRIN-B1.Peters.2002Data SourcePublication
Complete cDNA Template Probeshow
AAGCGCTTTGAGTCGTCCGAGCCGCTGCCTGCGAAGGGGAGTAGAGGGGGCGGCACGGCGGGCGGCGGCGCTGTGCGAG
CCGGGACGGCGGAGGGGACGCGCCGGAGCCGCCGTCGAGGCGAGAGGAGGAGCGGGAGGAACAGAAGGAGGAGGGCGGC
GGCGGGGCGCTGCCCGCGGGCTGCGCGGCGCCGATGCGGGGCTGAGGAGCGGAGAGCCCCGCGGCATGGGCGCCTGACG
CCCGGTGCCGTCCCGCCGCCGAGGGACGATGGCGCGGCCCCGCGGCGGGCGGTGGCTGCTGGGGGTGCTGCTCGCCCTG
TGCCGCCTGGCCGCGCCGCTCGCCAAGAGCCTGGAGCCCGTCTCTTGGAGCGCCGGCAACCCCAAATTCATGAGTGGGA
AAGGGTTGGTCATCTACCCGGAGATTGGGGACAAACTGGACATTATCTGCCCCAAGGCGGAGCCGTCCAAGCCTTACGA
TTACTACAAGCTGTACCTGGTGAAAAAGGACCAGGCAGATGCCTGCAGCACCGTCATGGACCCCAACGTGCTGGTGACG
TGCAACCGGCCCGAGCAGGAGATCCGCTTCACCATCAAGTTTCAGGAGTTCAGCCCCAACTACATGGGCCTGGAGTTCA
AGCGGCAGCAGGATTACTTCATCACATCCACCTCTAATGGGACACTGGATGGCCTGGAGAACCGGGAAGGAGGGGTCTG
CCAGACACGCTCCATGAAGATCGTCATGAAAGTGGGGCAGGATCCAAACGCGGTGATCCCGGAGCAGCTGACGACGAGT
CGGCCCAGCAAGGAGGCAGACAACACCGTGAAGATTGTGACGCAGAGCCCACGCCACAAAGTCCCCACGGTGGAGGAGC
CCGGCAAGCCAGGTTCCGTCAACCAGAACGGCCAGGAGACCCAAGGTCCCAGCGATGGGTTCCTGAGCTCCAAAGTCGC
CGTTTTCGCTGCCATCGGCGCGGGCTGCGTCATCTTCATCCTCATCATCATCTTCCTCGTCGTCCTCCTGATCAAGATC
CGCAAGCGGCACCGGAAGCACACGCAGCAGCGGGCCGCAGCCTTGTCCCTCAGCACCTTGGCCAGCCCCAAATGCAGCG
GGAACGCCGGCTCAGAGCCCAGCGACATCATCATCCCCTTACGGACTACAGAGAACAACTACTGCCCGCACTACGAGAA
GGTGAGCGGGGACTACGGGCACCCCGTCTACATCGTGCAGGAGATGCCCCCACAGAGCCCAGCCAACATTTACTACAAG
GTGTGAGGAGCAGCCTGGGCACGCCACGCAGGAGCGCCCGGTGGGGCCGGCAGCGGGAGGCAGCGTGCCCGGCCACGGC
ACGGCACGGCGCGGGAGCACAGGGGTCTGGCGCCCGTGCGCTGCCTCTCCCCCTTTGTATTTAGTTTTGTAGTTCTCAG
CTTTTGTAATCCCAAGACTTTGAGGGTGAGCTGCCAGCATCCTCCTCTCCTGCTCCGGACTGCGGCTGCAGCGCGCACT
CTGCCTTCCCGCGCCCGCCTGCACGCCGCCGGCACCCGCGGACTCCCACCTCCCCTTCTGCACTTTGGGATTTCCCCTC
GCCGCCTCCACGCCAAGTGCCCGTGCAGGGGCCCGGGAGCTGCGACGGATGCCGAGAGGAGCAGCGAGGAGCCCTGGGA
GGAGGAGGATGCTTCGCCCAGGTGCCGAGACGCAGAGAACTGTGCAGGGAGGAAGCTGGCAAACCCGATTTACTACTAC
TACTATTATTATTATTATAATTATTTTAATTTTTTTGTAACATTTTTATTTTTGTGAGTCGTGGCGGGACCCCCCGCCC
TGGGCACATGCCACAGCCTCCTTCCAGCACGCCGTCCTGCTGGCGCAGGCAGATCCGCCGCTGCCGTTTTAAACTTTTG
TGTTCGTAGCTGTTGACTTTTGTTTTAGTCTCTTTATAAAAA
CitationPeters MA, Cepko CL (2002). The dorsal-ventral axis of the neural retina is divided into multiple domains of restricted gene expression which exhibit features of lineage compartments. Dev Biol. 2002 Nov 1;251(1):59-73.
Copyright"Reprinted from Developmental Biology, 251(1), Peters MA, Cepko CL, The dorsal-ventral axis of the neural retina is divided into multiple domains of restricted gene expression which exhibit features of lineage compartments, 59-73, Copyright (2002), with permission from Elsevier". Copyright © ( 2002) Elsevier B.V. All rights reserved.
CommentsAccording to authors , "Probes for Pax2, Bmp4, Tbx5, SOHo, ephrin-B1, ephrin-B2, EphB1-B3, ALDH3/ALDH6, and ALDH1 were prepared as described (Refs)." As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_205035).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 19
stage 22
Midbrain
Pharyngeal Arches and Clefts
Retina
 
31-44
stage 44
stage 44
  

Entry 5

GEISHA IdEFNB1.Bobak.2009Data SourcePublication
Complete cDNA Template Probeshow
AAGCGCTTTGAGTCGTCCGAGCCGCTGCCTGCGAAGGGGAGTAGAGGGGGCGGCACGGCGGGCGGCGGCGCTGTGCGAG
CCGGGACGGCGGAGGGGACGCGCCGGAGCCGCCGTCGAGGCGAGAGGAGGAGCGGGAGGAACAGAAGGAGGAGGGCGGC
GGCGGGGCGCTGCCCGCGGGCTGCGCGGCGCCGATGCGGGGCTGAGGAGCGGAGAGCCCCGCGGCATGGGCGCCTGACG
CCCGGTGCCGTCCCGCCGCCGAGGGACGATGGCGCGGCCCCGCGGCGGGCGGTGGCTGCTGGGGGTGCTGCTCGCCCTG
TGCCGCCTGGCCGCGCCGCTCGCCAAGAGCCTGGAGCCCGTCTCTTGGAGCGCCGGCAACCCCAAATTCATGAGTGGGA
AAGGGTTGGTCATCTACCCGGAGATTGGGGACAAACTGGACATTATCTGCCCCAAGGCGGAGCCGTCCAAGCCTTACGA
TTACTACAAGCTGTACCTGGTGAAAAAGGACCAGGCAGATGCCTGCAGCACCGTCATGGACCCCAACGTGCTGGTGACG
TGCAACCGGCCCGAGCAGGAGATCCGCTTCACCATCAAGTTTCAGGAGTTCAGCCCCAACTACATGGGCCTGGAGTTCA
AGCGGCAGCAGGATTACTTCATCACATCCACCTCTAATGGGACACTGGATGGCCTGGAGAACCGGGAAGGAGGGGTCTG
CCAGACACGCTCCATGAAGATCGTCATGAAAGTGGGGCAGGATCCAAACGCGGTGATCCCGGAGCAGCTGACGACGAGT
CGGCCCAGCAAGGAGGCAGACAACACCGTGAAGATTGTGACGCAGAGCCCACGCCACAAAGTCCCCACGGTGGAGGAGC
CCGGCAAGCCAGGTTCCGTCAACCAGAACGGCCAGGAGACCCAAGGTCCCAGCGATGGGTTCCTGAGCTCCAAAGTCGC
CGTTTTCGCTGCCATCGGCGCGGGCTGCGTCATCTTCATCCTCATCATCATCTTCCTCGTCGTCCTCCTGATCAAGATC
CGCAAGCGGCACCGGAAGCACACGCAGCAGCGGGCCGCAGCCTTGTCCCTCAGCACCTTGGCCAGCCCCAAATGCAGCG
GGAACGCCGGCTCAGAGCCCAGCGACATCATCATCCCCTTACGGACTACAGAGAACAACTACTGCCCGCACTACGAGAA
GGTGAGCGGGGACTACGGGCACCCCGTCTACATCGTGCAGGAGATGCCCCCACAGAGCCCAGCCAACATTTACTACAAG
GTGTGAGGAGCAGCCTGGGCACGCCACGCAGGAGCGCCCGGTGGGGCCGGCAGCGGGAGGCAGCGTGCCCGGCCACGGC
ACGGCACGGCGCGGGAGCACAGGGGTCTGGCGCCCGTGCGCTGCCTCTCCCCCTTTGTATTTAGTTTTGTAGTTCTCAG
CTTTTGTAATCCCAAGACTTTGAGGGTGAGCTGCCAGCATCCTCCTCTCCTGCTCCGGACTGCGGCTGCAGCGCGCACT
CTGCCTTCCCGCGCCCGCCTGCACGCCGCCGGCACCCGCGGACTCCCACCTCCCCTTCTGCACTTTGGGATTTCCCCTC
GCCGCCTCCACGCCAAGTGCCCGTGCAGGGGCCCGGGAGCTGCGACGGATGCCGAGAGGAGCAGCGAGGAGCCCTGGGA
GGAGGAGGATGCTTCGCCCAGGTGCCGAGACGCAGAGAACTGTGCAGGGAGGAAGCTGGCAAACCCGATTTACTACTAC
TACTATTATTATTATTATAATTATTTTAATTTTTTTGTAACATTTTTATTTTTGTGAGTCGTGGCGGGACCCCCCGCCC
TGGGCACATGCCACAGCCTCCTTCCAGCACGCCGTCCTGCTGGCGCAGGCAGATCCGCCGCTGCCGTTTTAAACTTTTG
TGTTCGTAGCTGTTGACTTTTGTTTTAGTCTCTTTATAAAAA
CitationBobak N, Agoston Z, Schulte D. Evidence against involvement of Bmp receptor 1b signaling in fate specification of the chick mesencephalic alar plate at HH16. Neurosci Lett. 2009 Sep 25;461(3):223-8. Epub 2009 Jun 16
CopyrightReprinted with permission from Elsevier. Copyright © 2009 Elsevier B.V. All rights reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205035.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-16
stage 16
stage 16
Mesencephalon
Midbrain
 

Entry 6

GEISHA IdEPHRINB1.Mellott.2008Data SourcePublication
Complete cDNA Template Probeshow
ATGAGTGGGAAAGGGTTGGTCATCTACCCGGAGATTGGGGACAAACTGGACATTATCTGCCCCAAGGCGGAGCCGTCCA
AGCCTTACGATTACTACAAGCTGTACCTGGTGAAAAAGGACCAGGCAGATGCCTGCAGCACCGTCATGGACCCCAACGT
GCTGGTGACGTGCAACCGGCCCGAGCAGGAGATCCGCTTCACCATCAAGTTTCAGGAGTTCAGCCCCAACTACATGGGC
CTGGAGTTCAAGCGGCAGCAGGATTACTTCATCACATCCACCTCTAATGGGACACTGGATGGCCTGGAGAACCGGGAAG
GAGGGGTCTGCCAGACACGCTCCATGAAGATCGTCATGAAAGTGGGGCAGGATCCAAACGCGGTGATCCCGGAGCAGCT
GACGACGAGTCGGCCCAGCAAGGAGGCAGACAACACCGTGAAGATTGTGACGCAGAGCCCACGCCACAAAGTCCCCACG
GTGGAGGAGCCCGGCAAGCCAGGTTCCGTCAACCAGAACGGCCAGGAGACCCAAGGTCCCAGCGATGGGTTCCTGAGCT
CCAAAGTCGCCGTTTTCGCTGCCATCGGCGCGGGCTGCGTCATCTTCATCCTCATCATCATCTTCCTCGTCGTCCTCCT
GATCAAGATCCGCAAGCGGCACCGGAAGCACACGCAGCAGCGGGCCGCAGCCTTGTCCCTCAGCACCTTGGCCAGCCCC
AAATGCAGCGGGAACGCCGGCTCAGAGCCCAGCGACATCATCATCCCCTTACGGACTACAGAGAACAACTACTGCCCGC
ACTACGAGAAGGTGAGCGGGGACTACGGGCACCCCGTCTACATCGTGCAGGAGATGCCCCCACAGAGCCCAGCCAACAT
TTACTACAAGGTGTGAGGAGCAGCCTGGGCACGCCACGCAGGAGCGCCCGGTGGGGCCGGCAGCGGGAGGCAGCGTGCC
CGGCCACGGCACGGCACGGCGCGGGAGCACAGGGGTCTGGCGCCCGTGCGCTGCCTCTCCCCCTTTGTATTTAGTTTTG
TAGTTCTCAGCTTTTGTAATCCCAAGACTTTGAGGGTGAGCTGCCAGCATCCTCCTCTCCTGCTCCGGACTGCGGCTGC
AGCGCGCACTCTGCCTTCCCGCGCCCGCCTGCACGCCGCCGGCACCCGCGGACTCCCACCTCCCCTTCTGCACTTTGGG
ATTTCCCCTCGCCGCCTCCACGCCAAGTGCCCGTGCAGGGGCCCGGGAGCTGCGACGGATGCCGAGAGGAGCAGCGAGG
AGCCCTGGGAGGAGGAGGATGCTTCGCCCAGGTGCCGAGACGCAGAGAACTGTGCAGGGAGGAAGCTGGCAAACCCGAT
TTACTACTACTACTATTATTATTATTATAATTATTTTAATTTTTTTGTAACATTTTTATTTTTGTGAGTCGTGGCGGGA
CCCCCCGCCCTGGGCACATGCCACAGCCTCCTTCCAGCACGCCGTCCTGCTGGCGCAGGCAGATCCGCCGCTGCCGTTT
TAAACTTTTGTGTTCGTAGCTGTTGACTTTTGTTTTAGTCTCTTTATAAAAA
CitationMellott DO, and Burke RD. Divergent roles for Eph and Ephrin in Avian Cranial Neural Crest. BMC Developmental Biology 2008, 8:56.
Copyright© 2008 Mellott and Burke; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI U72394.1 Authors said: The ephrin-B1 fragment amplified by primers ephrin-B1-F1 (5'-ATCGATGAGTGGGAAAGGGTTGGTC-3') and ephrin-B1-R1 (5-GTCGACGTTGTCTGCCTCCTTGCTG-3') was subcloned between the ClaI and SalI sites of pBluescript II SK +.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-14
stage 14
stage 14
Head Mesenchyme
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.2142

Mouse

EmageMGI:102708
EurexpressMGI:102708
MGI GXDMGI:102708

Frog

Xenbase1011782

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-010618-2
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