GEISHA - A Chicken Embryo Gene Expression Database
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LDB1
LIM domain binding 1

Gene
Official SymbolLDB1
Official Full NameLIM domain binding 1
CGNC ID49571
also known asLIM domain-binding protein 1|CLIM-2|LDB-1|LIM domain-binding factor CLIM2|cLdb1|carboxyl-terminal LIM domain-binding protein 2|neural Src-interacting protein|neural src interacting protein|nuclear LIM interactor
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Sequence Information
Genomic
RNANM_205070
PolypeptideNP_990401
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human8861ENSG00000198728MIM:603451
Mouse16825ENSMUSG00000025223All phenotypic alleles (5):Targeted, knock-out(1) Targeted, other(4) MGI:894762
Xenopus407886, 380241493238
Zebrafish30576, 30579ENSDARG00000010137ZDB-GENE-990415-135, ZDB-GENE-990415-138ZFIN:ZDB-GENE-990415-135, ZFIN:ZDB-GENE-990415-138
Gene Ontology
Molecular FunctionLIM domain binding, protein homodimerization activity, transcription cofactor activity
Biological ProcessWnt signaling pathway, anterior/posterior axis specification, more...negative regulation of erythrocyte differentiation, neuron differentiation
Cellular Componentnucleus, protein complex
Links to other databases
Entrez Gene395952
Ensembl GeneENSGALG00000007641
KEGGgga:395952
GEISHA IdLDB1.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerCGTTACTTCCGCAGCATCTTTG
Reverse cDNA Template PrimerAATTAACCCTCACTAAAGGTCGCCTACCACCATCACATCAGcDNA Template Length650
Forward cDNA Template Probeshow
TTCCACCGCCGGAGCTCATAGTGCTGCCCCCCGACATCTTCCTTTTCCGGCGCTTGCTGGGCTGCTGCCGCGCCGGCTC
CGCAGGCGGCGCGACCATCCGCTGCCACTTCTGGAACAGGCAGGTCTTGAGGCAGTCCCGGGGACTGAGGCTGTAGGTC
TTGTGTCGTGACATGAGCTCCTGCATTGGTTCTAGGATTACACAGAGTCGGAGGTAGTTGAGTGTGGAGTTTGAGAGCC
CACAGCGGGTGATGTTCTTGGATAACTGGTCCAGCATCTGGGGGTCCTGTGCATGCATGGCAAGGATGCTGCGGGGGAT
GAGCTCTCGATGCTGGCGGATGCTGAAATGCCACGTCTTTATCCTCATCATGTCATCAAACATGAACTCCAGGTAGAGC
CGCCCCTCCACGCACACCTGGGTGAACATGGGCTTGCCATGCTGGGTGACCATGGTGCACTGGTCGCAGTCCAGAGAGA
CGAAGTTGTTGTGGAAGGACTCCTTGGGGTGCTTGAGCACGTAGTAGAGCTCTGTGGCCCCTCCTTCAAAGATGCTGCG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
stage 6
stage 6
stage 6
Early Mesoderm
Epiblast
Extraembryonic Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Primitive Streak
 
7-12
stage 8
stage 9
stage 9
stage 9
stage 9
stage 11
stage 11
Amnion
Blood Islands
Ectoderm
Forebrain
Head Mesenchyme
Heart Tube
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Primitive Streak
Sinus Venosus
Somites
extraembryonic ectoderm
 
13-18
stage 15
stage 17
Blood Islands
Ear/Otic Placode
Eye
Foregut
Hindbrain
Limb Buds
Midbrain
Neural Plate/Tube
Notochord
Pharyngeal Arches and Clefts
Somatic Mesoderm
Somites
 
19-24
stage 20
stage 23
Head Mesenchyme
Leg Mesenchyme
Lung
Pharyngeal Arches and Clefts
Sclerotome
Unlabeled
Wing Mesenchyme
 
25
stage 25
stage 25
stage 25
Foregut
Head Mesenchyme
Mesonephros
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Spinal Cord
 

Mouse

EmageMGI:894762
MGI GXDMGI:894762

Frog

Xenbase493238

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-990415-135, ZDB-GENE-990415-138
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