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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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NR5A1
nuclear receptor subfamily 5 group A member 1

The human orthologue of this gene is associated
with the following human diseases:

Gene

Official Symbol	NR5A1
Official Full Name	nuclear receptor subfamily 5 group A member 1
CGNC ID	49576
also known as	Ad4BP, SF-1, steroidogenic factor 1\|adrenal 4 binding protein
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_205077
Polypeptide	NP_990408
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.571

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	2516	ENSG00000136931	MIM:612965	MIM:184757
Mouse	26423	ENSMUSG00000026751	All phenotypic alleles (6):Targeted, knock-out(5) Targeted, other(1)	MGI:1346833
Xenopus	100271747, 100049145			485360
Zebrafish	83916, 405759	ENSDARG00000017704, ENSDARG00000023362	ZDB-GENE-010504-1, ZDB-GENE-040702-6	ZFIN:ZDB-GENE-010504-1, ZFIN:ZDB-GENE-040702-6

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	395960
Ensembl Gene	ENSGALG00000001080
KEGG	gga:395960

Entry 1

GEISHA Id	ChEST42j19	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GTGGCAGGGGATTTCTGCAGCAGCAAAGCTGAGCCCTGGGGCTGAGATCTGCTCCTGTCTGCCTCAGAGTCACTGCCTG CCCAGCACCAAGCAGGGCACTGCTGACCCTCAGCTGGCTCCACTTTCATAGCACTTGCCAATGCCATGGCAGGAACTGG GATTTTACAGCCCCTGGCAGCTGCAGTGCCCAAATCCCACCCATGTCTGGGCTCAGCTCACGTCCAGGATGGCAAGGCT TTGTGTAGAGGCTCCAAGAGTCAGTGCCGGGGACAGGGACTCATCCCTGGGACATTTCAGTTCCCCTGCATCAGGGCAG GAGAGGGTGCAGGGGCAGCGGCACGGCCAGGCACCCACAGCCTGGGCAGATTCCTGGAGCTCACTCCAGCCACCAGCCA TACCTGCATGCTGCTGGGGAGCAGCCAAAGGGCAGCCAAAGGGACAGAGATGGACACCATCCCCTCGCTGCCTGCAGGT GATGCTGGTAGAGGCGGCACTGCAGGCAGCAGGGCAGGAGGGATGCTCAGGGCCCAGCCTCATGCTGTGGGCACTGGGA CAGTTGCAGCAGCACGTGCCAGCACGTGCCCAGGACTGCAGCTGGGGGCCCTGGCAGCACCCCTGACATTTGGGCAAGG AGGAAGCAGAAGGGCCAGCACTGCCTTGTCCCCACGTGACAGCAGAGCGCTGAAGACACAGAGATGCTGCCTCTCCTCC CGCGCTGGGCTGGGGCTTAGCAGGGCAGCACAGAGGCTCCATCACAGCCTCCTCCTGCCCCACGCTGTGTCCTCACCGG TGCACAGCACATGGCCCTGCCAGCTCTGCCAATGGGTTTGGTTCAGGTGTTTTCTCCGCTGTCCCACTTGGAGGGGACA CTCACACACCACGGCTCCCCACAACACTGGCGCTTGGGGAGCTCTCGTGCTGCCAACCTCCAACCCCAATTGTTAGATA CAAAAGAGCATGTTTGTTTTTGCCTTTCAAGNTTGTGCCATTTCCCCCTGAATCTGTGGTTCAATTTCCTTTCCTCTTT CGGGAACTTAAGAACTGGAAAAAATGTTTGGGAAGGAAAAAATATTTATTTTCAAAAATGAAAAGGCCCTAAGGTCTCC CCCCTCTTTCCCAAAACTTTCCCTCTCCAACCCTCCCCTTTGCCCCACCTTCTTCCGGGGGAGGTTAAATTCGGTCGGA TAAACCGGAAAAATTGTCGTTTTAAAAAAAATCA
Comments	no specific expression detected stages 8, 11, 14, 17, 20, 23.

no images

Entry 2

GEISHA Id	NR5A1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5’-CTCAGCTGGCTCCACTTTCA-3’
Reverse cDNA Template Primer	5’-AATTAACCCTCACTAAAGGAAGTTGGGGTTGGAGGTTGG-3’	cDNA Template Length	835
Complete cDNA Template Probe	show CTCAGCTGGCTCCACTTTCATAGCACTTGCCAATGCCATGGCAGGAGCTGGGATTTTACAGCCCCTGGCAGCTGCAGTG CCCAAATCCCACCCATGTCTGGGCTCAGCTCACGTCCAGGATGGCAAGGCTTTGTGTAGAGGCTCCAAGAGTCAGTGCC GGGGACAGGGACTCATCCCTGGGACATTTCAGTTCCCCTGCATCAGGGCAGGAGAGGGTGCAGGGGCAGCGGCACGGCC AGGCACCCACAGCCTGGGCAGATTCCTGGAGCTCACTCCAGCCACCAGCCGTACCTGCATGCTGCTGGGGAGCAGCCAA AGGGCAGCCAAAGGGACAGAGATGGACACCATCCCCTCGCTGCCTGCAGGTGATGCTGGTAGAGGCGGCACTGCAGGCA GCAGGGCAGGAGGGACGCTCAGGGCCCAGCCTCATGCTGTGGGCACTGGGACAGTTGCAGCAGCACGTGCCAGCACGTG CCCAGGACTGCAGCTGGGGGCCCTGGCAGCACCCCTGACATTTGGGCAAGGAGGAAGCAGAAGGGCCAGCACTGCCTTG TCCCCACGTGACAGCAGAGCGCTGAAGACACAGAGATGCTGCCTCTCCTCCCGCGCTGGGCTGGGGCTTAGCAGGGCAG CACAGAGGCTCCATCACAGCCTCCTCCTGCCCCACGCTGTGTCCTCACCGGTGCACAGCACATGGCCCTGCCAGCTCTG CCAATGGGTTTGGTTCAGGTGTTTTCTCCGCTGTCCCACTTGGAGGGGACACTTCACACACCACGGCTCCGCACAGCAC TGGCGCTTGGGGAGCTCTCGTGCTGCCAACCTCCAACCCCAACTT

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 6

Unlabeled

7-12

stage 10

stage 11

Anterior Intestinal Portal
Blood Islands
Endoderm
Forebrain
Head Mesenchyme
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Sinus Venosus
Somites
Ventricles

13-18

stage 18

Amnion
Ectoderm
Forebrain
Head Mesenchyme
Leg Mesenchyme
Myotome
Neural Plate/Tube
Notochord
Oral Pharynx
Pharyngeal Arches and Clefts
Sclerotome
Somites
Tail
Wing Mesenchyme
Yolk Sack or Stalk
extraembryonic endoderm
extraembryonic mesoderm

19-24

stage 20

stage 24

Forebrain
Foregut
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Liver
Lung
Midbrain
Neural Plate/Tube
Outflow Tract
Pharyngeal Arches and Clefts
Sclerotome
Sinus Venosus
Somatic Mesoderm
Ventricles
Wing Mesenchyme

25-26

stage 26

Foregut
Lung
Sclerotome
Sinus Venosus
Spinal Cord
Widespread Expression

Entry 3

GEISHA Id	AD4BP/SF-1.Yoshioka.2005	Data Source	Publication
Complete cDNA Template Probe	show GAGCAGCGCTGCCCGGCACTCACGGAGTCTCCTCGAGCTGGAGCTGCTCACCATCGACGCAGAAGAAGCTCTCCTGTGA CCTCGGCCCCGTGCACAGCACAGCGCTGAGCCGCATCGAGGGCCGCCGGCGGGGATGGACTATTCGTATGATGAGGATC TGGACGAGCTGTGTCCGGTCTGCGGGGACAAGGTCTCCGGGTACCACTACGGGCTGCTCACCTGCGAGAGCTGCAAGGG CTTCTTCAAGAGGACCGTGCAGAACAACAAGCACTACACCTGCACCGAGAGCCAGAACTGCAAGATCGACAAGACCCAG AGGAAGTGCTGCCCCTACTGCCGCTTCCAGAAGTGCCTGACCGTGGGGATGCGCCTGGAAGCCGTGCGCGCGGATCGGA TGCGCGGCGGGAGGAATAAGTTTGGGCCCATGTACAAACGGGACCGTGCCTTAAAGCAGCAGAAGAAAGCGCTGATCCG TGCCAACGGCTTCAAGCTGGAGACGGTGCCACAGATCGTGTCACCTGTGCAGAATGACTACGGGCTGTCCTCCACCATC CACAGCATCCACGCCATGGCCAAGACGCTGCCGCCCAACCCCGCCGCCCTGACACCTGCTGACTATGAACGCGGCCCCT ACGGGACCCCCTCCCTGGCCATGACTGTGCCCGGCCACACGCCGCTCGCCGGCTACCACTACCCCTCCTTCCCCAACCG CGCCATCAAGTCCGAGTACCCCGACCACTACAGTGCTGCACATGAGGCCGTGCCCACCTATGCATACCCAGAGACCTAC CCCAGCAGTTCCCCACCCGACATCCCCGAGGTCATCCTGAAGCTGCTGCAGCTGGAGCCTGACGAGGCGCAGGTGAAGG CTCGCATCCTGGCCTGCCTGCAGCAGGAGCAGGGCAAGGGCCGGCATGAGAAGCTCAGTACCTTTGGCCTCATGTGCAA GATGGCTGACCAGACGCTGTTCTCCATCGTGGAGTGGGCGCGGAGCTGCATCTTCTTCAAGGAGCTGGAGGTGGGAGAC CAGATGAAGCTGCTGCAGAACTGCTGGAGCGAGCTGCTGGTGTTCGACCACGTGTACCGGCAGCTGCAGCACGGCAAAG AGCACAGTGTGCTGCTGGTCACCGGGCAGGAGGTGGATCTGTCAGCAGTGGCGGCGCAGGCGGGCTCCATCCTGCACTC CCTGGTGCTGCGGGCACAGGAACTGGTCCTGCACCTGCACTCACCGCAGGTGGACCGGCAGGAGTTCGTCTGCCTCAAA TTCCTGATCCTCTTCAGCCTCGATGTGAAGTACCTGGAGAACCACGCGCTGGCTAAGGACGCTCAGGAGAAGGCCAATG CAGCCCTGCTGGAGTACACGGTGTGCCACTACCCACACTGCACAGACAAGTTCCGGCAGCTGCTGCTGCGGCTGACTGA GGTCCGGGCGCTGAGCATGCAGGCAGAGGAGTACCTGTACCACAAGCACCTGAGCGGAGAGGTGCCCTGCAACAACCTC CTCATCGAGATGCTGCACGCCAAGCGGACTTGAGTGCAGTTCCCACATGGACTCTGCAGGGCCCCGCGCAGAATGGGGC AGGACACGCACCTGGGACCACCTCTCCGCCCCATGCCTCTCAGTGATGCTATTTAACCTGTGCTAGTGGAAGGTCCCAG GCGATTTATTTTAATACATGGTAAGGACGGTTAATGGTCGCAGGGATGTGTGCTCGACAGCCGGACTGCCCTGCCAGCA CTGCAGCCCTGCAGACCCTGCACAGTCAGTGCCCAACCTGCTGCCTGACCCGGCTCTGCGACATGAGCAGGGGGAAAGC CTGTCCTGGCTTAGCTCCCATTTCTGCTTCTCTCCTGTCATCCCCGCACTCTGTCTCTCCACCTCTGCGCTCCCACTGC CCAGTCTGCCCCCTCTGGGACCCCTGATGTACAGGGCATGGGAGGAAGTAAGCTTAAATCCCTCCAGGCTGTGGGGTTT CTCTTTGCTCTGGCACCCGCACAGTGGCAGGGGATTTCTGCAGCAGCAAAGCTGAGCCCTGGGGCTGAGATCTGCTCCT GTGTGCCTCAGAGTCACTGCCTGCCCAGCACCAAGCAGGGCACTGCTGACCCTCAGCTGGCTCCACTTTCATAGCACTT GCCAATGCCATGGCAGGAGCTGGGATTTTACAGCCCCTGGCAGCTGCAGTGCCCAAATCCCACCCATGTCTGGGCTCAG CTCACGTCCAGGATGGCAAGGCTTTGTGTAGAGGCTCCAAGAGTCAGTGCCGGGGACAGGGACTCATCCCTGGGACATT TCAGTTCCCCTGCATCAGGGCAGGAGAGGGTGCAGGGGCAGCGGCACGGCCAGGCACCCACAGCCTGGGCAGATTCCTG GAGCTCACTCCAGCCACCAGCCGTACCTGCATGCTGCTGGGGAGCAGCCAAAGGGCAGCCAAAGGGACAGAGATGGACA CCATCCCCTCGCTGCCTGCAGGTGATGCTGGTAGAGGCGGCACTGCAGGCAGCAGGGCAGGAGGGACGCTCAGGGCCCA GCCTCATGCTGTGGGCACTGGGACAGTTGCAGCAGCACGTGCCAGCACGTGCCCAGGACTGCAGCTGGGGGCCCTGGCA GCACCCCTGACATTTGGGCAAGGAGGAAGCAGAAGGGCCAGCACTGCCTTGTCCCCACGTGACAGCAGAGCGCTGAAGA CACAGAGATGCTGCCTCTCCTCCCGCGCTGGGCTGGGGCTTAGCAGGGCAGCACAGAGGCTCCATCACAGCCTCCTCCT GCCCCACGCTGTGTCCTCACCGGTGCACAGCACATGGCCCTGCCAGCTCTGCCAATGGGTTTGGTTCAGGTGTTTTCTC CGCTGTCCCACTTGGAGGGGACACTTCACACACCACGGCTCCGCACAGCACTGGCGCTTGGGGAGCTCTCGTGCTGCCA ACCTCCAACCCCAACTTGTTAGATACAGAAGAGCATGTTTGTTTTTGCTTTTCAACGTTTGTGCATTTTCCTCCTGAAG TCTGTGGTTCAGTTTCACTTTCTTCTTTCTGTGAACTTAAAGAACTGGAGAAAATGGTTTGGGAGGTAAAAGATATTTT ATTTTCAGAAAATGAAAAGTGTCCTTAAGTGTCTCTCTCTCTCTCTTTCTCTCACATCCTTTCCTCTCTCCCATCCCTC TCCTCCTTTGCTCCCCACCCTTCCTTCCCAGGCAGGAGGTTATTAACTTCCATGTCAGGAGTAAACCACTGTAATAAAT TTTGCAGTTCATCTAG
Citation	Yoshioka H, Ishimaru Y, Sugiyama N, Tsunekawa N, Noce T, Kasahara M, Morohashi K (2005). Mesonephric FGF signaling is associated with the development of sexually indifferent gonadal primordium in chick embryos. Dev Biol. 2005 Apr 1;280(1):150-61.
Copyright	Copyright © 2005 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205077).

Stage

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Location (click to highlight)

Comments (click to highlight)

19-24

stage 19

stage 21

stage 24

Gonad
Renal
Trunk Mesenchyme

Adrenal Primordium
Adreno-gonadal Primordium
Gonadal Primordium
Mesonephric Mesenchyme
Nephrogenous Mesenchyme

Entry 4

GEISHA Id	SF1.Huber.2008	Data Source	Publication
Complete cDNA Template Probe	show GAGCAGCGCTGCCCGGCACTCACGGAGTCTCCTCGAGCTGGAGCTGCTCACCATCGACGCAGAAGAAGCTCTCCTGTGA CCTCGGCCCCGTGCACAGCACAGCGCTGAGCCGCATCGAGGGCCGCCGGCGGGGATGGACTATTCGTATGATGAGGATC TGGACGAGCTGTGTCCGGTCTGCGGGGACAAGGTCTCCGGGTACCACTACGGGCTGCTCACCTGCGAGAGCTGCAAGGG CTTCTTCAAGAGGACCGTGCAGAACAACAAGCACTACACCTGCACCGAGAGCCAGAACTGCAAGATCGACAAGACCCAG AGGAAGTGCTGCCCCTACTGCCGCTTCCAGAAGTGCCTGACCGTGGGGATGCGCCTGGAAGCCGTGCGCGCGGATCGGA TGCGCGGCGGGAGGAATAAGTTTGGGCCCATGTACAAACGGGACCGTGCCTTAAAGCAGCAGAAGAAAGCGCTGATCCG TGCCAACGGCTTCAAGCTGGAGACGGTGCCACAGATCGTGTCACCTGTGCAGAATGACTACGGGCTGTCCTCCACCATC CACAGCATCCACGCCATGGCCAAGACGCTGCCGCCCAACCCCGCCGCCCTGACACCTGCTGACTATGAACGCGGCCCCT ACGGGACCCCCTCCCTGGCCATGACTGTGCCCGGCCACACGCCGCTCGCCGGCTACCACTACCCCTCCTTCCCCAACCG CGCCATCAAGTCCGAGTACCCCGACCACTACAGTGCTGCACATGAGGCCGTGCCCACCTATGCATACCCAGAGACCTAC CCCAGCAGTTCCCCACCCGACATCCCCGAGGTCATCCTGAAGCTGCTGCAGCTGGAGCCTGACGAGGCGCAGGTGAAGG CTCGCATCCTGGCCTGCCTGCAGCAGGAGCAGGGCAAGGGCCGGCATGAGAAGCTCAGTACCTTTGGCCTCATGTGCAA GATGGCTGACCAGACGCTGTTCTCCATCGTGGAGTGGGCGCGGAGCTGCATCTTCTTCAAGGAGCTGGAGGTGGGAGAC CAGATGAAGCTGCTGCAGAACTGCTGGAGCGAGCTGCTGGTGTTCGACCACGTGTACCGGCAGCTGCAGCACGGCAAAG AGCACAGTGTGCTGCTGGTCACCGGGCAGGAGGTGGATCTGTCAGCAGTGGCGGCGCAGGCGGGCTCCATCCTGCACTC CCTGGTGCTGCGGGCACAGGAACTGGTCCTGCACCTGCACTCACCGCAGGTGGACCGGCAGGAGTTCGTCTGCCTCAAA TTCCTGATCCTCTTCAGCCTCGATGTGAAGTACCTGGAGAACCACGCGCTGGCTAAGGACGCTCAGGAGAAGGCCAATG CAGCCCTGCTGGAGTACACGGTGTGCCACTACCCACACTGCACAGACAAGTTCCGGCAGCTGCTGCTGCGGCTGACTGA GGTCCGGGCGCTGAGCATGCAGGCAGAGGAGTACCTGTACCACAAGCACCTGAGCGGAGAGGTGCCCTGCAACAACCTC CTCATCGAGATGCTGCACGCCAAGCGGACTTGAGTGCAGTTCCCACATGGACTCTGCAGGGCCCCGCGCAGAATGGGGC AGGACACGCACCTGGGACCACCTCTCCGCCCCATGCCTCTCAGTGATGCTATTTAACCTGTGCTAGTGGAAGGTCCCAG GCGATTTATTTTAATACATGGTAAGGACGGTTAATGGTCGCAGGGATGTGTGCTCGACAGCCGGACTGCCCTGCCAGCA CTGCAGCCCTGCAGACCCTGCACAGTCAGTGCCCAACCTGCTGCCTGACCCGGCTCTGCGACATGAGCAGGGGGAAAGC CTGTCCTGGCTTAGCTCCCATTTCTGCTTCTCTCCTGTCATCCCCGCACTCTGTCTCTCCACCTCTGCGCTCCCACTGC CCAGTCTGCCCCCTCTGGGACCCCTGATGTACAGGGCATGGGAGGAAGTAAGCTTAAATCCCTCCAGGCTGTGGGGTTT CTCTTTGCTCTGGCACCCGCACAGTGGCAGGGGATTTCTGCAGCAGCAAAGCTGAGCCCTGGGGCTGAGATCTGCTCCT GTGTGCCTCAGAGTCACTGCCTGCCCAGCACCAAGCAGGGCACTGCTGACCCTCAGCTGGCTCCACTTTCATAGCACTT GCCAATGCCATGGCAGGAGCTGGGATTTTACAGCCCCTGGCAGCTGCAGTGCCCAAATCCCACCCATGTCTGGGCTCAG CTCACGTCCAGGATGGCAAGGCTTTGTGTAGAGGCTCCAAGAGTCAGTGCCGGGGACAGGGACTCATCCCTGGGACATT TCAGTTCCCCTGCATCAGGGCAGGAGAGGGTGCAGGGGCAGCGGCACGGCCAGGCACCCACAGCCTGGGCAGATTCCTG GAGCTCACTCCAGCCACCAGCCGTACCTGCATGCTGCTGGGGAGCAGCCAAAGGGCAGCCAAAGGGACAGAGATGGACA CCATCCCCTCGCTGCCTGCAGGTGATGCTGGTAGAGGCGGCACTGCAGGCAGCAGGGCAGGAGGGACGCTCAGGGCCCA GCCTCATGCTGTGGGCACTGGGACAGTTGCAGCAGCACGTGCCAGCACGTGCCCAGGACTGCAGCTGGGGGCCCTGGCA GCACCCCTGACATTTGGGCAAGGAGGAAGCAGAAGGGCCAGCACTGCCTTGTCCCCACGTGACAGCAGAGCGCTGAAGA CACAGAGATGCTGCCTCTCCTCCCGCGCTGGGCTGGGGCTTAGCAGGGCAGCACAGAGGCTCCATCACAGCCTCCTCCT GCCCCACGCTGTGTCCTCACCGGTGCACAGCACATGGCCCTGCCAGCTCTGCCAATGGGTTTGGTTCAGGTGTTTTCTC CGCTGTCCCACTTGGAGGGGACACTTCACACACCACGGCTCCGCACAGCACTGGCGCTTGGGGAGCTCTCGTGCTGCCA ACCTCCAACCCCAACTTGTTAGATACAGAAGAGCATGTTTGTTTTTGCTTTTCAACGTTTGTGCATTTTCCTCCTGAAG TCTGTGGTTCAGTTTCACTTTCTTCTTTCTGTGAACTTAAAGAACTGGAGAAAATGGTTTGGGAGGTAAAAGATATTTT ATTTTCAGAAAATGAAAAGTGTCCTTAAGTGTCTCTCTCTCTCTCTTTCTCTCACATCCTTTCCTCTCTCCCATCCCTC TCCTCCTTTGCTCCCCACCCTTCCTTCCCAGGCAGGAGGTTATTAACTTCCATGTCAGGAGTAAACCACTGTAATAAAT TTTGCAGTTCATCTAG
Citation	Huber K, Franke A, Brühl B, Krispin S, Ernsberger U, Schober A, von Bohlen und Halbach O, Rohrer H, Kalcheim C, Unsicker K. Persistent expression of BMP-4 in embryonic chick adrenal cortical cells and its role in chromaffin cell development. Neural Dev. 2008 Oct 22;3:28.
Copyright	© 2008 Huber et al; licensee BioMed Central Ltd. (requested from Dr. Unsicker)
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc #NM_205077.1)