GEISHA - A Chicken Embryo Gene Expression Database
Browse By
- Anatomical Location
- Stage
- Gene Name
- GEISHA ID
- Multiple Parameters
Search
- Quick Search
Data Class
Enter Text:
go
- Gene Family QuickSearch
Transcription Factors
Growth Factors
Receptors
MicroRNAs
- Human Disease Gene Search
Documents
- Downloads
- Protocols
- About GEISHA
- Contact Us
Resources
- Transgenic Birds
- Model Organism Databases
- Gene Expression Databases
- Genomic Resources
- Anatomical Atlases
- Chicken Stage Series
_

CAVIN1
caveolae associated protein 1

The human orthologue of this gene is associated
with the following human disease:
Gene
Official SymbolCAVIN1
Official Full Namecaveolae associated protein 1
CGNC ID2369
also known asPTRF, caveolae-associated protein 1|leucine-zipper protein|polymerase I and transcript release factor
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001001471
PolypeptideNP_001001471
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.977
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human284119ENSG00000177469MIM:613327MIM:603198
Mouse19285ENSMUSG00000004044All phenotypic alleles (4):Targeted, knock-out(1) Targeted, other(3) MGI:1277968
Xenopus448589, 380268996119
Zebrafish561082ENSDARG00000059362ZDB-GENE-030131-5509, ZDB-GENE-091204-151ZFIN:ZDB-GENE-030131-5509, ZFIN:ZDB-GENE-091204-151
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene396006
Ensembl Gene
KEGGgga:396006
GEISHA IdPTRF.Trevers.2023Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
TCCCACAGCGCTGCCATCGCGGGAGTGGCGTGGGCTCACACTCCCCAGCTCGGGTTAAATCCCAGCTGCCTGAATTCCG
GCTGGGCAGGGAATGTGCAGAGCTGGACGCTGCTCCCCACCTCCCGCGCGTGCCACCATCGGTGGGCAGTGAGAGCACA
CCGGTCGGGGAGAGGGTGGGTGTGGGTGTCTGTGCCAGAGGAGCCCACTCCAGCTGCGTCACGTTGCCAGAGGAATTTG
GGCTGTGCCGGTGCTGTGGGGGGCACCCGGCCGCCAGCGGGCAGCCTTGACACCGGTCCAGCACCACATCTTGAGCATT
TCTGAGCATCTCCTTCCATCGGGGGTCCCAGCGCGGCTCGGGCTCGCGCCCACGTCCTGCACTTCCCTCCCATTTCCCA
CTTCCCGTGGCTTTGCTCTGTTGCTGTAGGATCACACGCAGCCCCACGGCACTGCCCGGCTCGGCCCACGCTGCTCTCA
CACGCAGCCACCGCACGGCGCGGCCCCGCGGCAGCAGAGCAGGAGCAGGCAGGAGGCTGCGGCCCCACAGCTTCTGCTG
GGAGCTGTGGGTGCAGCGGGGCGGGTGGACGTGGGAGGGTGGGATGCGCCCATCCCGTCTGCTCAGCACTGCCCTACGT
GCCGCTTTCCTTCTGGCCCTGCTCCTCCCCGCGCAGCCGGGACTGCTGCTGACATAACCACGTATATAAACTTGCTTTT
CCTCTCAGATCGTACTCCCTCTCATTGTCAAACGAACCCAGGCCTCCCCACCA
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023. PTRF is also known as CAVIN1.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XIII
Area Opaca
margin of overgrowth (edge of area opaca) / weaker in rest of area opaca
1-3
stage 3
Ubiquitous
weakly ubiquitous
4-6
stage 6
Headfold
Neural Plate/Tube
Primitive Streak
neural plate / head fold / primitive streak
7-9
stage 9
Neural Plate/Tube
Primitive Streak
neural plate (stronger anteriorly) / anterior primitive streak
all
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.977

Mouse

EmageMGI:1277968
EurexpressMGI:1277968
MGI GXDMGI:1277968

Frog

Xenbase996119

Fruit Fly

BDGP

Zebra Finch

ZEBrACAVIN1

Zebrafish

ZFINZDB-GENE-030131-5509, ZDB-GENE-091204-151
Home | Contact
     
© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona