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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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TNNC1
troponin C1, slow skeletal and cardiac type

The human orthologue of this gene is associated
with the following human diseases:

Gene

Official Symbol	TNNC1
Official Full Name	troponin C1, slow skeletal and cardiac type
CGNC ID	49617
also known as	PCTNC1, troponin C, slow skeletal and cardiac muscles\|TN-C\|cardiac troponin C\|troponin C type 1 (slow)
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_205133
Polypeptide	NP_990464

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	7134	ENSG00000114854	MIM:192600	MIM:191040
Mouse	21924	ENSMUSG00000091898	All phenotypic alleles (2):Targeted, other(2)	MGI:98779
Xenopus	447990, 379410			480514
Zebrafish	353247, 415175	ENSDARG00000011400	ZDB-GENE-030523-1, ZDB-GENE-040625-62	ZFIN:ZDB-GENE-030523-1, ZFIN:ZDB-GENE-040625-62

Gene Ontology

Molecular Function	actin filament binding, calcium ion binding, calcium-dependent protein binding, more...
Biological Process	cardiac muscle contraction, regulation of ATPase activity, regulation of muscle filament sliding speed, more...
Cellular Component	troponin complex

Links to other databases

Entrez Gene	396032
Ensembl Gene	ENSGALG00000001459
KEGG	gga:396032

Entry 1

GEISHA Id	TNNC1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TTATAAAAGCTTGCGGCCGCAGAATATATAAGGCGGCGGTTGAGCAG
Reverse cDNA Template Primer	GCTCTAGAAATTAACCCTCACTAAAGGGCAGAAGGGGTTTCAGAGATTCG	cDNA Template Length	580
Complete cDNA Template Probe	show TTTTATAAAAAGCTTGCGGCCGCAGAATATATAAGGCGGCGGTGAGCATTGACAGAACAAAAAAATGAGTTTAAGGCTG CCTTCGACATCTTCGTGCTGGGGGCAGAGGATGGCTGCATCAGCACCAAGGAGCTGGGGAAGGTGATGAGGATGCTGGG GCAGAACCCCACCCCTGAGGAGCTGCAGGAGATGATTGATGAGGTGGATGAGGATGGCAGTGGCACTGTGGACTTTGAT GAGTTCCTTGTTATGATGGTTCGGTGTATGAAAGATGACAGCAAAGGAAAAACTGAAGAGGAGCTCTCAGATCTCTTCA GGATGTTTGATAAGAATGCTGATGGCTACATCGATCTTGAGGAACTGAAGATCATGCTACAGGCAACTGGAGAGACGAT CACTGAGGATGACATAGAAGAACTGATGAAAGATGGGGACAAAAACAATGATGGCAGGATTGATCTATGAGCGAGTTCC TGGAGTTCATGAAGGGAGTTGAATAAATCTGAAGCCAGATGGACAGCCCGAATCTCTGAAACCCCTTCTGCCCTTTAGT GAGGGTTAATTTTCTAGAGCAA

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Area Pellucida

Low level expression.

4-6

stage 4

stage 6

Area Pellucida
Cardiovascular
Headfold
Neural Plate/Tube

Low level expression.

7-12

stage 7

stage 8

stage 9

Anterior Intestinal Portal
Area Pellucida
Head Process
Headfold
Heart Tube
Lateral Plate Mesoderm
Mesoderm
Neural Plate/Tube
Notochord

13-18

stage 13

stage 14

stage 15

stage 18

Heart
Lateral Plate Mesoderm
Myotome
Notochord
Somites

Sections pending.
sections pending.

19-24

stage 21

stage 23

stage 24

Allantois
Heart
Myotome
Somites

Sections pending.

Entry 2

GEISHA Id	TNNIC1.Anderson.2020	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show TGACGCCCCCCGGCCCTTCGCCCTCCCTGCCCGGCCATGGATGACATCTATAAGGCGGCGGTTGAGCAGTTGACAGAAG AACAAAAAAATGAGTTTAAGGCTGCCTTCGACATCTTCGTGCTGGGGGCAGAGGATGGCTGCATCAGCACCAAGGAGCT GGGGAAGGTGATGAGGATGCTGGGGCAGAACCCCACCCCTGAGGAGCTGCAGGAGATGATTGATGAGGTGGATGAGGAT GGCAGTGGCACTGTGGACTTTGATGAGTTCCTTGTTATGATGGTTCGGTGTATGAAAGATGACAGCAAAGGAAAAACTG AAGAGGAGCTCTCAGATCTCTTCAGGATGTTTGATAAGAATGCTGATGGCTACATCGATCTTGAGGAACTGAAGATCAT GCTACAGGCAACTGGAGAGACGATCACTGAGGATGACATAGAAGAACTGATGAAAGATGGGGACAAAAACAATGATGGC AGGATTGACTATGACGAGTTCCTGGAGTTCATGAAGGGAGTTGAATAAATCTGAAGCCAGATGGACAGCCCGAATCTCT GAAACCCCTTCTGCTCTGTGACTCAGCTCCTTGGTCCCATCCCCTGGCTGCCAGCATGAAGACTGAGCGCTGAGAAGGG TGGCCATAGGGAACATAAAGCGCGTTGCTATCAAAAA
Comments	Images and probe sequence provided by Claire Anderson.