GEISHA - A Chicken Embryo Gene Expression Database
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STMN2
stathmin 2

Gene
Official SymbolSTMN2
Official Full Namestathmin 2
CGNC ID49645
also known asSCG10, stathmin-2, stathmin-2|stathmin-like 2|superior cervical ganglion-10 protein, Stathmin-2 , SCG10 protein, Superior cervical ganglion-10 protein
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_205181
PolypeptideNP_990512
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.1585
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human11075ENSG00000104435MIM:600621
Mouse20257ENSMUSG00000027500MGI:98241
Xenopus448716, 494676, 780757ENSXETG00000007079962965
Zebrafish449651, 100003563ENSDARG00000033234, ENSDARG00000070537ZDB-GENE-041010-85, ZDB-GENE-050522-207ZFIN:ZDB-GENE-041010-85, ZFIN:ZDB-GENE-050522-207
Gene Ontology
Molecular Function
Biological Processcellular response to nerve growth factor stimulus, negative regulation of microtubule polymerization, more...positive regulation of neuron projection development
Cellular Componentaxon, cytoplasm, growth cone, lamellipodium, membrane, neuronal cell body, neuron projection, more...perinuclear region of cytoplasm
Links to other databases
Entrez Gene396095
Ensembl Gene
KEGGgga:396095

Entry 1

GEISHA IdSCG10.Politis.2007Data SourcePublication
Complete cDNA Template Probeshow
GTGGATCAATATTTAATGCCCGGAGATTCTGGCTCTGCAGGAGTCATGTCAGGGGACCTCTAGAGCCAATCTGCTTGGG
TAGAGGAGTGATAATTATTCATGGGCTCCTGCCTCTTGCTCCTTCTCTTGCACGGCCCCACTCTGCTGACTCAGTGCCT
TATTCAGTCTTCTCTCCCTCTCTGCGCTGCTGTAGCTGGACCCCTTTGCCTTCAGCACCTCTGAGCGCCTGCACATCCC
ACCATGGCTAAAACAGCAATGGCTTACAAGGAAAAGATGAAGGAGCTGTCCATGCTCTCCCTGATCTGCTCCTGTTTTT
ATCCTGAACCTCGCAACATGAACATCTATAAATATGATGACATGGAAGTTAAACAAATCAACAAACGTGCCTCAGGCCA
GGCCTTTGAACTGATCCTAAAGCCACCATCCCCAGTCTCGGAAGCACCACGAACTTTAGCCTCTCCAAAGAAGAAAGAG
CTCTCCCTTGAGGAGATCCAGAAAAAGCTGGAGGCTGCCGAGGAGAGGAGAAAGTCCCAGGAGGCCCAGGTGCTGAAAC
ATCTGGCGGAGAAGAGGGAACATGAGCGAGAGGTGCTTCAGAAAGCTCTGGAGGAGAACAATAACTTCAGCAAAATGGC
AGAGGAAAAGCTGATACTGAAAATGGAACAGATCAAAGAAAACCGTGAAGCTAATCTAGCTGCTCTTATTGAACGTCTC
CAAGAAAAGGAGAGGCATGCTGCAGAGGTCCGTAGAAACAAGGAGCTCCAGGTGGAACTGTCTGGCTGAGAACAGCAAT
GGTGGATGTGACCCATCCCCACCATTAGTAAACTCCCCCTGCCTATATTATTATGGATCATGCGATATCAGTATGGGAA
ATGTATGACATGGTTT
CitationPolitis PK, Rohrer H, Matsas R (2007). Expression pattern of BM88 in the developing nervous system of the chick and mouse embryo. Gene Expr Patterns. 2007 Jan;7(1-2):165-77. Epub 2006 Jul 4
CopyrightReprinted with permission from Elsevier. Copyright © 2006 Elsevier B.V. All rights reserved.
CommentsAccording to authors , "The following probes were used: cSCG10, cNotch1, cOlig2 (kindly provided by Masato Nakafuku), cNkx6.1 (kindly provided by James Briscoe) and Mash1 (kindly provided by Francois Guillemot). As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # L14938)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
Spinal Cord
Figure 2 includes HH stages 12, 15, 18, and 24.
13-18
stage 15
stage 18
Spinal Cord
 
19-24
stage 24
stage 24
stage 24
stage 24
stage 24
Midbrain
Spinal Cord
Spinal Ganglia and Nerves
Figure includes HH stages 24, 29, and 33.
dorsal root ganglia
25-30
stage 29
Spinal Cord
Spinal Ganglia and Nerves
dorsal root ganglia sympathetic ganglia
31-44
stage 33
stage 33
stage 44
stage 44
stage 44
Ectoderm
Spinal Cord
Spinal Ganglia and Nerves
Telencephalon
dorsal root ganglia, sympathetic ganglia
stage 45 and not stage 44

Entry 2

GEISHA IdSCG10.Shin.2003Data SourcePublication
Complete cDNA Template Probeshow
GTGGATCAATATTTAATGCCCGGAGATTCTGGCTCTGCAGGAGTCATGTCAGGGGACCTCTAGAGCCAATCTGCTTGGG
TAGAGGAGTGATAATTATTCATGGGCTCCTGCCTCTTGCTCCTTCTCTTGCACGGCCCCACTCTGCTGACTCAGTGCCT
TATTCAGTCTTCTCTCCCTCTCTGCGCTGCTGTAGCTGGACCCCTTTGCCTTCAGCACCTCTGAGCGCCTGCACATCCC
ACCATGGCTAAAACAGCAATGGCTTACAAGGAAAAGATGAAGGAGCTGTCCATGCTCTCCCTGATCTGCTCCTGTTTTT
ATCCTGAACCTCGCAACATGAACATCTATAAATATGATGACATGGAAGTTAAACAAATCAACAAACGTGCCTCAGGCCA
GGCCTTTGAACTGATCCTAAAGCCACCATCCCCAGTCTCGGAAGCACCACGAACTTTAGCCTCTCCAAAGAAGAAAGAG
CTCTCCCTTGAGGAGATCCAGAAAAAGCTGGAGGCTGCCGAGGAGAGGAGAAAGTCCCAGGAGGCCCAGGTGCTGAAAC
ATCTGGCGGAGAAGAGGGAACATGAGCGAGAGGTGCTTCAGAAAGCTCTGGAGGAGAACAATAACTTCAGCAAAATGGC
AGAGGAAAAGCTGATACTGAAAATGGAACAGATCAAAGAAAACCGTGAAGCTAATCTAGCTGCTCTTATTGAACGTCTC
CAAGAAAAGGAGAGGCATGCTGCAGAGGTCCGTAGAAACAAGGAGCTCCAGGTGGAACTGTCTGGCTGAGAACAGCAAT
GGTGGATGTGACCCATCCCCACCATTAGTAAACTCCCCCTGCCTATATTATTATGGATCATGCGATATCAGTATGGGAA
ATGTATGACATGGTTT
CitationShin M, Fukuda K, Yasugi S. Expression of DDSG1, a novel gene encoding a putative DNA-binding protein in the embryonic chicken nervous system. Gene Expr Patterns. 2003 Aug;3(4):431-6.
CopyrightReprinted from Gene Expression Patterns, Volume 3, Masahiro Shin, Kimiko Fukuda, and Sadao Yasugi, Expression of DDSG1, a novel gene encoding a putative DNA-binding protein in the embryonic chick nervous system, Pages 431-436, Copyright 2003, with permission from Elsevier. Copyright © 2003 Elsevier B.V. All rights reserved.
CommentsThe authors say: ...a cDNA fragment including 3′-untranslated region of SCG10 (Stein et al., 1988) were used as probes. Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_205181).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 21
stage 22
stage 22
stage 22
stage 22
Diencephalon
Hindbrain
Midbrain
Spinal Cord
Telencephalon
 
25-30
stage 28
stage 28
stage 30
Neural Plate/Tube
Spinal Cord
Spinal Ganglia and Nerves
 
31-34
stage 34
Spinal Cord
Spinal Ganglia and Nerves
 

Entry 3

GEISHA IdSCG10.Huber.2012Data SourcePublication
Complete cDNA Template Probeshow
GTGGATCAATATTTAATGCCCGGAGATTCTGGCTCTGCAGGAGTCATGTCAGGGGACCTCTAGAGCCAATCTGCTTGGG
TAGAGGAGTGATAATTATTCATGGGCTCCTGCCTCTTGCTCCTTCTCTTGCACGGCCCCACTCTGCTGACTCAGTGCCT
TATTCAGTCTTCTCTCCCTCTCTGCGCTGCTGTAGCTGGACCCCTTTGCCTTCAGCACCTCTGAGCGCCTGCACATCCC
ACCATGGCTAAAACAGCAATGGCTTACAAGGAAAAGATGAAGGAGCTGTCCATGCTCTCCCTGATCTGCTCCTGTTTTT
ATCCTGAACCTCGCAACATGAACATCTATAAATATGATGACATGGAAGTTAAACAAATCAACAAACGTGCCTCAGGCCA
GGCCTTTGAACTGATCCTAAAGCCACCATCCCCAGTCTCGGAAGCACCACGAACTTTAGCCTCTCCAAAGAAGAAAGAG
CTCTCCCTTGAGGAGATCCAGAAAAAGCTGGAGGCTGCCGAGGAGAGGAGAAAGTCCCAGGAGGCCCAGGTGCTGAAAC
ATCTGGCGGAGAAGAGGGAACATGAGCGAGAGGTGCTTCAGAAAGCTCTGGAGGAGAACAATAACTTCAGCAAAATGGC
AGAGGAAAAGCTGATACTGAAAATGGAACAGATCAAAGAAAACCGTGAAGCTAATCTAGCTGCTCTTATTGAACGTCTC
CAAGAAAAGGAGAGGCATGCTGCAGAGGTCCGTAGAAACAAGGAGCTCCAGGTGGAACTGTCTGGCTGAGAACAGCAAT
GGTGGATGTGACCCATCCCCACCATTAGTAAACTCCCCCTGCCTATATTATTATGGATCATGCGATATCAGTATGGGAA
ATGTATGACATGGTTT
CitationHuber L, Ferdin M, Holzmann J, Stubbusch J, Rohrer H. HoxB8 in noradrenergic specification and differentiation of the autonomic nervous system. Dev Biol. 2012 Mar 1;363(1):219-33. Epub 2011 Dec 24.
CopyrightCopyright © 2011 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # NM_205181.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 24
stage 24
Spinal Cord
Spinal Ganglia and Nerves
 
25-30
stage 27
stage 27
stage 29
stage 29
stage 29
Peripheral Nervous System
Spinal Cord
Spinal Ganglia and Nerves
ciliary ganglia
sympathetic ganglia
31
stage 31
stage 31
stage 31
Neural Plate/Tube
Spinal Cord
Spinal Ganglia and Nerves
 

Entry 4

GEISHA IdSTMN2.Ratie.2013Data SourcePublication
Complete cDNA Template Probeshow
GTGGATCAATATTTAATGCCCGGAGATTCTGGCTCTGCAGGAGTCATGTCAGGGGACCTCTAGAGCCAATCTGCTTGGG
TAGAGGAGTGATAATTATTCATGGGCTCCTGCCTCTTGCTCCTTCTCTTGCACGGCCCCACTCTGCTGACTCAGTGCCT
TATTCAGTCTTCTCTCCCTCTCTGCGCTGCTGTAGCTGGACCCCTTTGCCTTCAGCACCTCTGAGCGCCTGCACATCCC
ACCATGGCTAAAACAGCAATGGCTTACAAGGAAAAGATGAAGGAGCTGTCCATGCTCTCCCTGATCTGCTCCTGTTTTT
ATCCTGAACCTCGCAACATGAACATCTATAAATATGATGACATGGAAGTTAAACAAATCAACAAACGTGCCTCAGGCCA
GGCCTTTGAACTGATCCTAAAGCCACCATCCCCAGTCTCGGAAGCACCACGAACTTTAGCCTCTCCAAAGAAGAAAGAG
CTCTCCCTTGAGGAGATCCAGAAAAAGCTGGAGGCTGCCGAGGAGAGGAGAAAGTCCCAGGAGGCCCAGGTGCTGAAAC
ATCTGGCGGAGAAGAGGGAACATGAGCGAGAGGTGCTTCAGAAAGCTCTGGAGGAGAACAATAACTTCAGCAAAATGGC
AGAGGAAAAGCTGATACTGAAAATGGAACAGATCAAAGAAAACCGTGAAGCTAATCTAGCTGCTCTTATTGAACGTCTC
CAAGAAAAGGAGAGGCATGCTGCAGAGGTCCGTAGAAACAAGGAGCTCCAGGTGGAACTGTCTGGCTGAGAACAGCAAT
GGTGGATGTGACCCATCCCCACCATTAGTAAACTCCCCCTGCCTATATTATTATGGATCATGCGATATCAGTATGGGAA
ATGTATGACATGGTTT
CitationLeslie Ratié, Michelle Ware, Frédérique Barloy-Hubler, Hélène Romé, Isabelle Gicquel, Christèle Dubourg, Véronique David and Valérie Dupé. Novel genes upregulated when NOTCH signalling is disrupted during hypothalamic development. Neural Dev. 2013 Dec 23;8:25. doi: 10.1186/1749-8104-8-25.
Copyright© 2013 Ratié et al.; licensee BioMed Central Ltd.
CommentsThe sequence below was obtained from NCBI (acc # NM_205181.1) using the information provided in the publication as described in Ratie et al.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-15
stage 15
stage 15
stage 15
stage 15
Hypothalamus
left embryo = control vehicle, DMSO; right embryo = DAPT-treated

Entry 5

GEISHA IdSTMN2.Ratie.2014Data SourcePublication
Complete cDNA Template Probeshow
GTGGATCAATATTTAATGCCCGGAGATTCTGGCTCTGCAGGAGTCATGTCAGGGGACCTCTAGAGCCAATCTGCTTGGG
TAGAGGAGTGATAATTATTCATGGGCTCCTGCCTCTTGCTCCTTCTCTTGCACGGCCCCACTCTGCTGACTCAGTGCCT
TATTCAGTCTTCTCTCCCTCTCTGCGCTGCTGTAGCTGGACCCCTTTGCCTTCAGCACCTCTGAGCGCCTGCACATCCC
ACCATGGCTAAAACAGCAATGGCTTACAAGGAAAAGATGAAGGAGCTGTCCATGCTCTCCCTGATCTGCTCCTGTTTTT
ATCCTGAACCTCGCAACATGAACATCTATAAATATGATGACATGGAAGTTAAACAAATCAACAAACGTGCCTCAGGCCA
GGCCTTTGAACTGATCCTAAAGCCACCATCCCCAGTCTCGGAAGCACCACGAACTTTAGCCTCTCCAAAGAAGAAAGAG
CTCTCCCTTGAGGAGATCCAGAAAAAGCTGGAGGCTGCCGAGGAGAGGAGAAAGTCCCAGGAGGCCCAGGTGCTGAAAC
ATCTGGCGGAGAAGAGGGAACATGAGCGAGAGGTGCTTCAGAAAGCTCTGGAGGAGAACAATAACTTCAGCAAAATGGC
AGAGGAAAAGCTGATACTGAAAATGGAACAGATCAAAGAAAACCGTGAAGCTAATCTAGCTGCTCTTATTGAACGTCTC
CAAGAAAAGGAGAGGCATGCTGCAGAGGTCCGTAGAAACAAGGAGCTCCAGGTGGAACTGTCTGGCTGAGAACAGCAAT
GGTGGATGTGACCCATCCCCACCATTAGTAAACTCCCCCTGCCTATATTATTATGGATCATGCGATATCAGTATGGGAA
ATGTATGACATGGTTT
CitationRatié L, Ware M, Jagline H, David V and Dupé V (2014) Dynamic expression of Notch-dependent neurogenic markers in the chick embryonic nervous system. Front. Neuroanat. 8:158. doi: 10.3389/fnana.2014.00158
CopyrightCopyright © 2014 Ratié, Ware, Jagline, David and Dupé.
CommentsThe sequence below was obtained from NCBI (acc # NM_205181.1) using the information provided in the publication as described in Ratie et al.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
stage 10
stage 12
Peripheral Nervous System
Unlabeled
 
13-18
stage 14
stage 14
stage 15
stage 16
stage 16
stage 18
Peripheral Nervous System
Rhombomeres
Spinal Cord
Double labeled with HuC/D antibody (brown) and mRNA Probe (blue)
control - shows normal expression
19-22
stage 22
stage 22
stage 22
stage 22
Peripheral Nervous System
Rhombomeres
Spinal Cord
Spinal Ganglia and Nerves
Double labeled with HuC/D antibody (brown) and mRNA Probe (blue)

Entry 6

GEISHA IdSTMN2.Ware.2014Data SourcePublication
Complete cDNA Template Probeshow
GTGGATCAATATTTAATGCCCGGAGATTCTGGCTCTGCAGGAGTCATGTCAGGGGACCTCTAGAGCCAATCTGCTTGGG
TAGAGGAGTGATAATTATTCATGGGCTCCTGCCTCTTGCTCCTTCTCTTGCACGGCCCCACTCTGCTGACTCAGTGCCT
TATTCAGTCTTCTCTCCCTCTCTGCGCTGCTGTAGCTGGACCCCTTTGCCTTCAGCACCTCTGAGCGCCTGCACATCCC
ACCATGGCTAAAACAGCAATGGCTTACAAGGAAAAGATGAAGGAGCTGTCCATGCTCTCCCTGATCTGCTCCTGTTTTT
ATCCTGAACCTCGCAACATGAACATCTATAAATATGATGACATGGAAGTTAAACAAATCAACAAACGTGCCTCAGGCCA
GGCCTTTGAACTGATCCTAAAGCCACCATCCCCAGTCTCGGAAGCACCACGAACTTTAGCCTCTCCAAAGAAGAAAGAG
CTCTCCCTTGAGGAGATCCAGAAAAAGCTGGAGGCTGCCGAGGAGAGGAGAAAGTCCCAGGAGGCCCAGGTGCTGAAAC
ATCTGGCGGAGAAGAGGGAACATGAGCGAGAGGTGCTTCAGAAAGCTCTGGAGGAGAACAATAACTTCAGCAAAATGGC
AGAGGAAAAGCTGATACTGAAAATGGAACAGATCAAAGAAAACCGTGAAGCTAATCTAGCTGCTCTTATTGAACGTCTC
CAAGAAAAGGAGAGGCATGCTGCAGAGGTCCGTAGAAACAAGGAGCTCCAGGTGGAACTGTCTGGCTGAGAACAGCAAT
GGTGGATGTGACCCATCCCCACCATTAGTAAACTCCCCCTGCCTATATTATTATGGATCATGCGATATCAGTATGGGAA
ATGTATGACATGGTTT
CitationWare M, Hamdi-Rozé H and Dupé V (2014) Notch signaling and proneural genes work together to control the neural building blocks for the initial scaffold in the hypothalamus. Front Neuroanat. 2014 Dec 2;8:140. doi: 10.3389/fnana.2014.00140.
CopyrightCopyright © 2014 Ware, Hamdi-Rozé and Dupé
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence was obtained from NCBI (Acc. # NM_205181.1). STMN2 is also known as SCG10 and stathmin-2
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
Hypothalamus
 

Entry 7

GEISHA IdSCG10.Vieceli.2013Data SourcePublication
Complete cDNA Template Probeshow
GGACCTCTAGAGCCAATCTGCTTGGGTAGAGGAGTGATAATTATTCATGGGCTCCTGCCTCTTGCTCCTTCTCTTGCAC
GGCCCCACTCTGCTGACTCAGTGCCTTATTCAGTCTTCTCTCCCTCTCTGCGCTGCTGTAGCTGGACCCCTTTGCCTTC
AGCACCTCTGAGCGCCTGCACATCCCACCATGGCTAAAACAGCAATGGCTTACAAGGAAAAGATGAAGGAGCTGTCCAT
GCTCTCCCTGATCTGCTCCTGTTTTTATCCTGAACCTCGCAACATGAACATCTATAAATATGATGACATGGAAGTTAAA
CAAATCAACAAACGTGCCTCAGGCCAGGCCTTTGAACTGATCCTAAAGCCACCATCCCCAGTCTCGGAAGCACCACGAA
CTTTAGCCTCTCCAAAGAAGAAAGAGCTCTCCCTTGAGGAGATCCAGAAAAAGCTGGAGGCTGCCGAGGAGAGGAGAAA
GTCCCAGGAGGCCCAGGTGCTGAAACATCTGGCGGAGAAGAGGGAACATGAGCGAGAGGTGCTTCAGAAAGCTCTGGAG
GAGAACAATAACTTCAGCAAAATGGCAGAGGAAAAGCTGATACTGAAAATGGAACAGATCAAAGAAAACCGTGAAGCTA
ATCTAGCTGCTCTTATTGAACGTCTCCAAGAAAAGGAGAGGCATGCTGCAGAGGTCCGTAGAAACAAGGAGCTCCAGGT
GGAACTGTCTGGCTGAGAACAGCAATGGTGGATGTGACCCATCCCCACCATTAGTAAACTCCCCCTGCCTATATTATTA
TGGATCATGCGATATCAGTATGGGAAATGTATGACATGGTTT
CitationVieceli FM, Simões-Costa M, Turri JA, Kanno T, Bronner M, Yan CY. The transcription factor chicken Scratch2 is expressed in a subset of early postmitotic neural progenitors. Gene Expr Patterns. 2013 Jun-Jul;13(5-6):189-96. DOI: 10.1016/j.gep.2013.03.004.
CopyrightCopyright © 2013 Elsevier B.V.
CommentsAuthors indicated the probe for SCG10 was synthesized from 54–885 nucleotides of NCBI NM_205181 and provided by P.K. Politis. Above sequence was extracted from NCBI (NM_205181.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25
stage 25
stage 25
Spinal Cord
Spinal Ganglia and Nerves
 
all
 
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.1585

Mouse

EmageMGI:98241
EurexpressMGI:98241
MGI GXDMGI:98241

Frog

Xenbase962965

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-041010-85, ZDB-GENE-050522-207
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