GEISHA - A Chicken Embryo Gene Expression Database
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FOXD1
forkhead box D1

Gene
Official SymbolFOXD1
Official Full Nameforkhead box D1
CGNC ID49653
also known asBF-2, CBF-2, HFH-BF-2, T-14-6, forkhead box protein D1|brain factor-2|winged helix protein CWH-4
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_205192
PolypeptideNP_990523
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.51521
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish
Gene Ontology
Molecular Functionsequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Processaxon guidance, dichotomous subdivision of terminal units involved in ureteric bud branching, more...metanephric capsule specification, metanephric nephron development, negative regulation of transcription, DNA-templated, nephrogenic mesenchyme development, positive regulation of BMP signaling pathway, positive regulation of kidney development, positive regulation of transcription from RNA polymerase II promoter, transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene396109
Ensembl Gene
KEGGgga:396109

Entry 1

GEISHA IdFOXD1.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template Primer5’-CCCGCATCTCTAACTGTTAAGGG-3’
Reverse cDNA Template Primer5’-ATTAACCCTCACTAAAGGTCCCTCAAGCCTTCTCTGTTC-3’cDNA Template Length428
Complete cDNA Template Probeshow
CCCGCATCTCTAACTGTTAAGGGGTTCGGAGTCTTTCCGAAGGTAGGATCTGGGCTCTTTTTCTTTGCCGCTCGGATGC
CCGGCGGACGCACGGAGGAGCGGCTTTGCGCGGGATTTGCGCGGGATTTGCGCGCGGTTTGCGCGTTGGGGATATATGA
GGCCGTTCTCTGTGGCCGGCGGGTTGTCCGGGACCGGTCCGATGCACAGCCAGGTCGGTGTGCTGCACGGGCAGGCGGT
CACGCTGTTGGAAAGTTACTCGTTACTCCTTAAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAGAGAGAAAGAAAGAAAG
AAGAAAAAAAGTAATAATAATAAATAACGTCTCTAAACCGTCAAAGTTCAGAGATTCTCAGGTCTAGGAGCTTGAAAAC
AGTGATTTACAGGAACAGAGAAGGCTTGAGGGA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
Unlabeled
 
13-18
stage 18
Aorta
Eye
Forebrain
Head Mesenchyme
Hindbrain
Midbrain
Oral Pharynx
Pharyngeal Arches and Clefts
Sclerotome
 
19-24
stage 20
stage 20
stage 21
stage 23
Aorta
Cranial PNS
Ear/Otic Placode
Eye
Foregut
Head Mesenchyme
Lung
Nasal Placode/Nerve
Pharyngeal Arches and Clefts
Sclerotome
Spinal Ganglia and Nerves
Ventricles
 
25
stage 25
stage 25
stage 25
Ear/Otic Placode
Esophagus
Eye
Foregut
Head Mesenchyme
Oral Pharynx
Pharyngeal Arches and Clefts
Sclerotome
Spinal Ganglia and Nerves
 

Entry 2

GEISHA IdCBF2.Takahashi.2003Data SourcePublication
Complete cDNA Template Probeshow
CCGCGGCGCTGCCCCCCCCGCCGCCGCCGCCGCCGCCGCCGCGCCGCCGGGCCCCTTTGCTGCCGGCTGCGGAGCTGGC
ACGGACGCCCTTCGGCTACCCGCACCCGCTGGGCCCGGCGCTGGCGGCCTCGCTGCACGCCGCCAAGCCCGGCAGCGGC
GCGGCGGTGGCCCGCTCGCCCTTCTCCATCGAGAGCATCATCGGGGGGGGGCCGGGCCCCGGCCTGGGTGCCGGCCCCG
CTCCCGGTGCGGGCGGCAGCTGCGCCTCGCAGTCGGGCGCGGCGACGGGGCTGTCCCGCTCGCTGGGGAGCGGCCTGGC
ACCCGCCGCCGCGCTGCCCGCCGCGCCCGGCCTGGCGGCCCGCATCTCTAACTGTTAAGGGGTTCGGAGTCTTTCCGAA
GGTAGGATCTGGGCTCTTTTTCTTTGCCGCTCGGATGCCCGGCGGACGCACGGAGGAGCGGCTTTGCGCGGGATTTGCG
CGGGATTTGCGCGCGGTTTGCGCGTTGGGGATATATGAGGCCGTTCTCTGTGGCCGGCGGGTTGTCCGGGACCGGTCCG
ATGCACAGCCAGGTCGGTGTGCTGCACGGGCAGGCGGTCACGCTGTTGGAAAGTTACTCGTTACTCCTTAAAAAAAAAA
GAAAGAAAGAAAGAAAGAAAGAGA
CitationTakahashi H, Shintani T, Sakuta H, Noda M. CBF1 controls the retinotectal topographical map along the anteroposterior axis through multiple mechanisms. Development. 2003 Nov;130(21):5203-15. Epub 2003 Sep 3.
CopyrightPublished by The Company of Biologists 2007. This material is protected by a copyright retained by the authors.
CommentsAuthors indicated the probe was the 656 bp fragment of chick CBF2 (1191-1846; U47276).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
stage 18
Retina
 
31-34
stage 34
stage 34
stage 34
Retina
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.51521

Mouse

Emage
Eurexpress
MGI GXD

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
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