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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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NFIA
nuclear factor I A

Gene

Official Symbol	NFIA
Official Full Name	nuclear factor I A
CGNC ID	49704
also known as	CNFI-A, cNFI-A3, nuclear factor 1 A-type\|CCAAT-box-binding transcription factor\|CTF\|NF-I/A\|NF1-A\|NFI-A\|TGGCA-binding protein\|nuclear factor 1/A, Nuclear factor 1 A-type , Nuclear factor 1/A, NF1-A, NFI-A, or NF-I/A , TGGCA-binding protein, CCAAT-box-binding transcription factor (CTF)
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_205273
Polypeptide	NP_990604
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.710

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	43782			FBgn0042696
Human	4774	ENSG00000162599		MIM:600727
Mouse	18027	ENSMUSG00000028565	All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2)	MGI:108056
Xenopus	100498088, 780750			1010392
Zebrafish	556665	ENSDARG00000062420	ZDB-GENE-050208-501	ZFIN:ZDB-GENE-050208-501

Gene Ontology

Molecular Function	DNA binding, sequence-specific DNA binding transcription factor activity
Biological Process	DNA replication, transcription, DNA-templated
Cellular Component	nucleus

Links to other databases

Entrez Gene	396210
Ensembl Gene	ENSGALG00000010924
KEGG	gga:396210

Entry 1

GEISHA Id	NFIA.Domowicz.2011	Data Source	Publication
Complete cDNA Template Probe	show GAATTCCGGGCGCTGCGCTGCGCCGCGCTGCCCCCGCTCCGCGCTATGCCTTTAACAGAGCGCGGGGCAGGCATGCCGA GCCGGTAGTGCGGGAAAGTCGAGGCGGGGTTAAAGTTCAGCTCATGGAGCGGCTCCGCGCTGGCTGCAGTTTGGCAGAG TTGGAAATGTGAAAGCAAGAAGCAGGCTCGGGGCTCCCCCTCCTCTCCTCTCTCTCTCTCTTTTTTTTTCCTCTCTCTC CCTCTCTCCCCCCCTCTCCCCCTCTCTCTCCTCTCTCCCGCACACGCACACCTCCGCCCGCAGCCCCCCGCAGCAGTCA TGTATTCTCCGCTCTGTCTCACGCAGGATGAATTTCATCCCTTCATCGAAGCACTTCTGCCTCACGTCCGAGCGTTTGC GTACACGTGGTTCAACCTGCAAGCCCGAAAGAGAAAATACTTCAAAAAACATGAGAAACGCATGTCAAAAGAGGAAGAG AGGGCCGTGAAGGACGAACTCTTAAGTGAAAAACCCGAGGTAAAGCAGAAATGGGCGTCCAGACTTCTGGCAAAGCTTC GGAAAGATATCAGGCCTGAATTTCGGGAGGATTTTGTTCTCACAGTCACAGGAAAAAAGCCTCCGTGTTGCGTCCTTTC CAATCCAGACCAGAAGGGCAAGATGAGAAGAATTGACTGCCTTCGCCAGGCAGATAAGGTCTGGAGGTTGGACCTCGTT ATGGTGATTTTATTTAAAGGTATTCCGCTCGAAAGTACTGATGGCGAGCGCCTTGTAAAGTCCCCACAGTGCTCTAACC CCGGGCTGTGCGTACAGCCCCACCATATAGGAGTTTCTGTTAAGGAACTCGATTTATATTTGGCATACTTTGTGCACGC TGCAGATTCAAGTCAATCTGAAAGTCCCAGCCAGCCAAGTGAAGCTGATATTAAGGACCAGCCAGAAAATGGACATTTG GGCTTCCAGGACAGTTTTGTCACATCAGGTGTTTTCAGTGTGACCGAGCTAGTAAGAGTCTCACAAACACCAATAGCTG CAGGAACAGGCCCTAATTTCTCCCTCTCAGATTTGGAAAGTTCTTCGTACTACAGCATGAGCCCAGGAGCAATGAGGAG GTCTTTACCTAGCACATCCTCTACCAGCTCTACAAAACGTATCAAATCTGTGGAGGATGAGATGGACAGTCCTGGTGAG GAGCCGTTCTATACAAGCCAAGGGCGCTCTCCAGGAAGTGGCAGCCAGTCAAGTGGATGGCATGAAGTGGAACCAGGAA TGCCATCGCCAACTGCATTAAAGAAGTCAGAGAAGTCTGGTTTCAGCAGTCCCTCGCCTTCGCAGACCTCCTCCCTTGG AACGGCTTTCACACAGCACCATCGACCTGTCATTACAGGACCCAGAGCAAGTCCACATGCAACACCATCGACTCTTCAT TTTCCAACATCACCCATTATCCAACAGCCTGGGCCATACTTCTCACACCCAGCAATCCGCTATCATCCTCAGGAGACTC TGAAAGAGTTTGTCCAACTTGTCTGCCCCGACGCTGGTCAGCAGGCTGGACAGGTGGGGTTCCTAAATCCCAATGGTAG CAGCCAAGGCAAGGTGCACAATCCATTCCTTCCTACCCCAATGTTGCCACCACCACCTCCGCCACCAATGGCTAGGCCT GTGCCTCTGCCAGTGCCAGACACAAAACCTCCAACTACATCAACAGAAGGAGGGGCCACCTCTCCCACTTCTCCAACCT ACTCGACACCCAGCACCTCCCCCGCAAACCGATTCGTCAGTGTTGGACCACGGGATCCAAGCTTTGTAAATATCCCTCA ACAGACTCAGTCCTGGTACCTGGGATAAAAGTCTCCGCTTCCCACCACGCACCGGACAGACCACCTGACCCCTTCCCAC CTCTGTAACACGGAAGCAGCAGCATCGCAGCGCAGCGACTTCACATCGGCGGAAGGGGAGGCGAGCAGACACCGACAGC AAACTCGTACATGGAAATGGCAAACGTTATGGTTGAATGGCAAAGGCCGTAACTTTTTCGAGATTTTTTTTTTTTTTAA ACAACTTAGGACTGTTGTAATTTCTCCTATGGTGCTGGAAATGGTTGGGCTTCATAACTTTTGAAGTGTTTCATTGGTA GTGTAAGCGTTAGGTGACACTGAGTAGAACTAGCCTCTGCTGCTGCTTACCAACTCGCTGTTGTAACACACTTTCCATA TGGAGCCTAACTGTTTGACAGTATCCTCATCGATTTTTCCCATACAGGTGTGAGACTTCTTGAGAAATCATGAAACACA CTTAAACTATAACTTTTGTAGTAGCTGAATTC
Citation	Domowicz MS, Henry JG, Wadlington N, Navarro A, Kraig RP, Schwartz NB. Astrocyte precursor response to embryonic brain injury. Brain Res. 2011 May 10;1389:35-49. Epub 2011 Mar 9.
Copyright	Copyright © 2011, Elsevier
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205273.1 )

Stage

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31-41

stage 37

stage 41

Midbrain

Entry 2

GEISHA Id	NFIA.Singh.2016	Data Source	Publication
Complete cDNA Template Probe	show CAGCCCCCCGCAGCAGTCATGTATTCTCCGCTCTGTCTCACGCAGGATGAATTTCATCCCTTCATCGAAGCACTTCTGC CTCACGTCCGAGCGTTTGCGTACACGTGGTTCAACCTGCAAGCCCGAAAGAGAAAATACTTCAAAAAACATGAGAAACG CATGTCAAAAGAGGAAGAGAGGGCCGTGAAGGACGAACTCTTAAGTGAAAAACCCGAGGTAAAGCAGAAATGGGCGTCC AGACTTCTGGCAAAGCTTCGGAAAGATATCAGGCCTGAATTTCGGGAGGATTTGTTCTCACAGTCACAGGAAAAAAGCC TCCGTGTTGCGTCCTTTCCAATCCAGACCAGAAGGGCAAGATGAGAAGAATTGACTGCCTTCGCCAGGCAGATAAGGTC TGGAGGTTGGACCTCGTTATGGTGATTTTATTTAAAGGTATTCCGCTCGAAAGTACTGATGGCGAGCGCCTTGTAAAGT CCCCACAGTGCTCTAACCCCGGGCTGTGCGTACAGCCCCACCATATAGGAGTTTCTGTTAAGGAACTCGATTTATATTT GGCATACTTTGTGCACGCCGCAGATTCAAGTCAATCTGAAAGTCCCAGCCAGCCAAGTGAAGCTGATATTAAGGACCAG CCAGAAAATGGACATTTTGGGCTTCCAGGACAGTTTTGTCACATCAGGTGTCTTCAGTGTGACC
Citation	Singh PN, Ray A, Azad K, Bandyopadhyay A. A comprehensive mRNA expression analysis of developing chicken articular cartilage. Gene Expr Patterns. 2016 Jan;20(1):22-31.
Copyright	Copyright © 2015 Elsevier B.V. All rights reserved.
Comments	The complete cDNA template sequence was obtained from the information provided in the publication as described in Singh et al. 2016. The probe was synthesized from cDNA clone ChEST864l9.