GEISHA - A Chicken Embryo Gene Expression Database
Browse By
- Anatomical Location
- Stage
- Gene Name
- GEISHA ID
- Multiple Parameters
Search
- Quick Search
Data Class
Enter Text:
go
- Gene Family QuickSearch
Transcription Factors
Growth Factors
Receptors
MicroRNAs
- Human Disease Gene Search
Documents
- Downloads
- Protocols
- About GEISHA
- Contact Us
Resources
- Transgenic Birds
- Model Organism Databases
- Gene Expression Databases
- Genomic Resources
- Anatomical Atlases
- Chicken Stage Series
_

TIMP3
TIMP metallopeptidase inhibitor 3

The human orthologue of this gene is associated
with the following human disease:
Gene
Official SymbolTIMP3
Official Full NameTIMP metallopeptidase inhibitor 3
CGNC ID9540
also known asIMP-3, TIMP-3, metalloproteinase inhibitor 3|21 kDa protein of extracellular matrix|TIMP metallopeptidase inhibitor 3 (Sorsby fundus dystrophy, pseudoinflammatory)|tissue inhibitor of metalloproteinase 3|tissue inhibitor of metalloproteinases 3
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_205487
PolypeptideNP_990818
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.2827
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human7078ENSG00000100234MIM:136900MIM:188826
Mouse21859ENSMUSG00000020044All phenotypic alleles (9):Targeted, knock-out(4) Targeted, other(5) MGI:98754
Xenopus100489929, 373596482399
ZebrafishZDB-GENE-070824-3ZFIN:ZDB-GENE-070824-3
Gene Ontology
Molecular Functionmetal ion binding, metalloendopeptidase inhibitor activity
Biological Process
Cellular Componentproteinaceous extracellular matrix
Links to other databases
Entrez Gene396483
Ensembl Gene
KEGGgga:396483

Entry 1

GEISHA IdTIMP-3.Brauer.2002Data SourcePublication
Complete cDNA Template Probeshow
CGAGAGAGAGGCGGTGTGAGGAGGGAGCGAGCGAGCAGCGAACAGGCGAGGCTCGAGTTAGGCGAACAGAACAGCGGCT
GCAGCTCGAAGCGCACCCCGGGGCAGGCAGCATGACGGCGTGGCTCGGCTTCCTCGCCGTGTTCCTGTGCAGCTGGAGC
CTGCGGGACCTGGTGGCGGAGGCGTGCACTTGCGTCCCCATCCACCCGCAGGACGCGTTCTGCAACTCCGACATCGTGA
TCCGTGCTAAAGTTGTGGGGAAGAAGCTCATGAAAGATGGACCATTTGGAACAATGCGATACACAGTCAAGCAGATGAA
GATGTACAGGGGCTTCCAGATAATGCCACACGTTCAGTACATCTACACAGAAGCCTCAGAGAGTCTTTGTGGTGTGAAA
CTGGAGGTCAACAAATACCAGTATCTGATTACAGGCCGCGTGTACGAAGGGAAGGTTTACACTGGCCTGTGCAATTGGT
ATGAGAAATGGGACCGACTGACTCTGTCCCAGCGTAAAGGACTGAATCATCGTTATCATCTGGGCTGTGGATGCAAGAT
TCGGCCCTGCTACTATTTGCCCTGCTTTGCCACCTCCAAGAATGAGTGCATTTGGACAGACATGCTCTCCAACTTCGGC
CACTCAGGACACCAAGCGAAGCACTATGCCTGCATCCAGAGGGTGGAAGGTTACTGCAGCTGGTATAGAGGATGGGCGC
CTCCAGATAAAACGATCATCAATGCCACAGATCCCTGAGCACGCTGTACCTTCCTTATCTTCCCTCTCCCTTACTTGTG
GCTGATCTTCCTTTGGACACTAACTCTTACCCGATCATGATGATGACAATGAAATTAGTGCCTGTTTTCTTGCAAATTC
TAGCACTTCGAAC
CitationBrauer PR, Cai DH. Expression of tissue inhibitor of metalloproteinases (TIMPs) during early cardiac development. Mech Dev. 2002 May;113(2):175-9.
CopyrightCopyright © 2002 Elsevier Science Ireland Ltd.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_205487.2).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 11
stage 12
Myocardium
Notochord
 
13-18
stage 13
stage 17
Atria
Endocardium
Ventricles
 
19-24
stage 19
stage 23
Endocardium
Myocardium
 
25-30
stage 25
stage 25
Cardiovascular
Endocardium
Ventricles
 
31-44
stage 44
  

Entry 2

GEISHA IdTIMP3.Anderson.2019Data SourcePublication
Complete cDNA Template Probeshow
TTCCGCTTCAGCCCCGCTCGGTCCTGTAGCGCTGCTCACTCGGGCTTGCTCCGTGCCGCCGAGCGAGGGCTGCGCTGCT
GAGGCCGAGAGAGAGGCGGTGTGAGGAGGGAGCGAGCGAGCAGCGAGCAGGCGAGGCTCGAGTTAGGCGAACAGAACAG
CGGCTGCAGCTCGAAGCGCACCCCGGGGCAGGCAGCATGACGGCGTGGCTCGGCTTCCTCGCCGTGTTCCTGTGCAGCT
GGAGCCTGCGGGACCTGGTGGCGGAGGCGTGCACTTGCGTCCCCATCCACCCGCAGGACGCGTTCTGCAACTCCGACAT
CGTGATCCGTGCTAAAGTTGTGGGGAAGAAGCTCATGAAAGATGGACCATTTGGAACAATGCGATACACAGTCAAGCAG
ATGAAGATGTACAGGGGCTTCCAGATAATGCCACACGTTCAGTACATCTACACAGAAGCCTCAGAGAGTCTTTGTGGTG
TGAAACTGGAGGTCAACAAATACCAGTATCTGATTACAGGCCGCGTGTACGAAGGGAAGGTTTACACTGGCCTGTGCAA
TTGGTATGAGAAATGGGACCGGCTGACTCTGTCCCAGCGTAAAGGACTGAATCATCGTTATCATCTGGGCTGTGGATGC
AAGATTCGGCCCTGCTACTATTTGCCCTGCTTTGCCACCTCCAAGAATGAGTGCATTTGGACAGACATGCTCTCCAACT
TCGGCCACTCAGGACACCAAGCGAAGCACTATGCCTGCATCCAGAGGGTTGGAAGGTTACTGCAGCTGGGTATAGAGGA
TGGGGCGCCTCCAGATAAAACATCATCAATGCCACAGATCCCTGAGCACGCTGTACCTTCCTTATCTTCCCTCTCCCTT
ACTTGTGGGTGATCTTCCCTTTGGACACTAACTCTTACCCGA
CitationAnderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
CopyrightCopyright © 2019 Elsevier Inc. All rights reserved.
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in Anderson et al. 2019.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
Myocardium
 
all
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.2827

Mouse

EmageMGI:98754
EurexpressMGI:98754
MGI GXDMGI:98754

Frog

Xenbase482399

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-070824-3
Home | Contact
     
© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona