Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

CDH6
cadherin 6

Gene

Official Symbol	CDH6
Official Full Name	cadherin 6
CGNC ID	9782
also known as	c-cad6B, cadherin-6, cadherin-6B, cadherin-6\|cadherin 6, type 2, K-cadherin (fetal kidney)\|cadherin 6B, Cadherin-6 precursor , Cadherin-6B, c-cad6B
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001001758
Polypeptide	NP_001001758
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.600

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	1004	ENSG00000113361		MIM:603007
Mouse	12563	ENSMUSG00000039385	All phenotypic alleles (4):Targeted, knock-out(2) Targeted, other(2)	MGI:107435
Xenopus	100495587, 373627			484591
Zebrafish	541393	ENSDARG00000014522	ZDB-GENE-050320-92	ZFIN:ZDB-GENE-050320-92

Gene Ontology

Molecular Function	calcium ion binding
Biological Process	homophilic cell adhesion
Cellular Component	cytoplasm, integral component of membrane, nucleus, plasma membrane

Links to other databases

Entrez Gene	414842
Ensembl Gene	ENSGALG00000012917
KEGG	gga:414842

Entry 1

GEISHA Id	CDH6.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	CAAGTGGAAGATGTAGATGAACCCC
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGTTCTGGCACAATGTCTCTGCG	cDNA Template Length	969
Forward cDNA Template Probe	show GGCTCGGGANTCCCAGCGNCCGATATCAAATGCCTGGGTGTCTTCCTCTCCACCACGNTCATCATTATAACTGACAATG TTGTCTCTGATGTCTTCTTTGGAAATAATCAAAGGCTCTTTTTTCCTTTGCCGTCTCAGTGCTGCAAACAACACCACTG TAACAAGTAATATAATGATACAGAGAAGAATGGCAATAAGAGCCCCAGTGCTAAGACCAGTAGGATGAATCAAGGCTTC CGCATTACAGGACAGCATCTTTCCTCGATGGTCACAAGCACATACACGAATAGTCACTGTTTCAGTGCTGCTCTGGATA GGGTAGTCATTGTCTGATATTACCACTGGCAAAAGGTAGGTACTCATTTCATGCCGGTTATATCTGATTTTTCGGGTGA AAATCCCCGCTGTGTTGTCTCTGTTGTCCTGGAGTGTAAAGTTTGAGCTGCTGGCTGCCTCTGGAGCTATGCTGAATGA AAACTGGTGTCCACTGTAAGAGTCATCTTTATCAACAGCACTCAATGTTTGTATCAGCTGTTCTGCCTTTGCATTTTCA CAGACAAAGGTCTCATAAAACATGGCAAACTCTGGAGCATTGTCGTTTACATCCAAAACCTTAATGAACACTGGGACAC GGCTGCTTTGTTTTGGGTTGTTGATCTCTGCTGCTATTACTGTAATGTTGTGCCATAGCAATGTTTCCCGGTCAAGAGT TTTTGACGTAAATATCGAACCATTTCCTGAGTTGATGTTGAATACTCTGTCCATATCAGTGTGTCGATCTACAGAATAC TTGACAGGGTTCTTGGCAGCATCTGGATCCTGTGCTGTTACTGTTCCTATTACACTGTTTATTGGAACATCTTCTTTTC ACTTCAATTATANATGCTGGTCTGCTGAACACAGGGGGGTTCATCTACATCTTTCCA

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

stage 6

Early Mesoderm
Neural Plate/Tube

7-12

stage 8

stage 9

stage 10

stage 11

Blood Islands
Forebrain
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube

13-18

stage 15

stage 16

Amnion
Diencephalon
Eye
Forebrain
Foregut
Heart
Hindbrain
Lateral Plate Mesoderm
Liver
Lung
Midbrain
Neural Plate/Tube
Pancreas
Pharynx
Somatic Mesoderm
Spinal Cord
Splanchnic Mesoderm

19-24

stage 21

stage 23

Cranial PNS
Diencephalon
Foregut
Heart
Hindbrain
Hindgut
Liver
Lung
Midgut
Pancreas
Spinal Cord
Trunk Mesenchyme

stage 25

Aorta
Cardinal Veins
Cranial PNS
Foregut
Heart
Hindgut
Liver
Lung
Mesonephros
Midgut
Pancreas
Pineal Gland
Spinal Cord
Spinal Ganglia and Nerves
Trunk Mesenchyme

Entry 2

GEISHA Id	Cad6B.Jiankai.2007	Data Source	Publication
Complete cDNA Template Probe	show GGTTCGAAGACGATCAGATAGAGAGCCCCCTCGGCTCGGGCTGCCTGCATGCGGGAGTTAAAAAGTGCTGCCGGTCGAG CGGCAGCCCCAGTGAGCGGCGGGGAGGCTGAGAGCGGGCAGCAGGGGCCGGGAGCCGCCGCCACCCATCCCAGCTTGGC CCTGCGAGCCGAGATCCTCTGAGACTGCAAAGACTACTTAAAGAACGAAGACGGCATGAGATTGGATTTGATCCAGTAA AATAGGTTAGCTTGAGGACAAGAAAAACAGTTGCTATTTAGATCTTCTCTTGTTGCCGTGATGAGAACTTACCATTGCT TCTGGTTGCTGTTTTGGGCTGGCCAGCCCCACCAAAGTTTTTTAACTTTGCTGTCCAAAAGGACTAGTGGCTTTCCAGA GAAGGAAAAGGTTTTGGTATTGTCTGGAAACAGCAGGAGAGACCTCAGTCGTTCCAAAAGGAGTTGGATGTGGAATCAG TTCTTTTTACTGGAAGAATATACAGGAACTGACTATCAGTATGTTGGCAAGCTGCATTCAGACCAGGATAAAGGAGATG GATCACTTAAGTACATCCTTTCTGGAGATGGAGCAGGAGACCTCTTCATTATCAATGAAAACACTGGTGACATCCAAGC CACAAAGAGACTAGACAGAGAAGAAAAGCCTGTGTACATACTTCGTGCCCAGGCTATAAACCGAAGAACTGGAAGACCA GTGGAACCAGAATCTGAGTTCATCATCAAGATCCATGATATCAACGACAATGAGCCAATGTTTACAAAGGACGTTTACA ATGCCAGCATTCCAGAAATGTCAGATGTTGGTACCTTTGTTGTGCAAGTCACTGCAACTGATGCCGATGATCCTACATA TGGGAACAGCGCTAAAGTTGTCTACAGCATTCTCCAGGGACAACCATATTTCTCTGTAGAATCTGAGACAGGTATTATT AAAACTGCTTTGCTAAACATGGACCGTGAAAACAGGGAGCAATATCAAGTGGTCATCCAAGCTAAGGACATGGGAGGCC AGATGGGCGGATTATCAGGAACCACCACTGTGAACATCACACTGACCGACGTAAATGACAATCCTCCTCGGTTCCCCCA GAGCACCTACCAATTCAGAGCTCCTGAGTCTACGCCACCTGACTCACCAATTGGCAGGATTAAAGCTAATGATGCAGAT GTGGATGAAAATGCAGAGATTGAATACAGCATCACTGAGGGGGATGGATATGACATGTTTGGAATTACCACAGACAAGG ACACACAGGAAGGAATTATAACTGTCAAAAAGGCACTGGATTTTGAAAATAAAAACTTGTATATTCTGAAGGTGGAAGC CACCAATACTCACGTGGACCCTCGATTCCTCTACTTGGGGCCATTCAAGGATTCAGCCACAATCAGAATTCAAGTGGAA GATGTAGATGAACCCCCTGTGTTCAGCAGACCAGCATATATAATTGAAGTGAAAGAAGATGTTCCAATAAACAGTGTAA TAGGAACAGTAACAGCACAGGATCCAGATGCTGCCAAGAACCCTGTCAAGTATTCTGTAGATCGACACACTGATATGGA CAGAGTATTCAACATCAACTCAGGAAATGGTTCGATATTTACGTCAAAAACTCTTGACCGGGAAACATTGCTATGGCAC AACATTACAGTAATAGCAGCAGAGATCAACAACCCAAAACAAAGCAGCCGTGTCCCAGTGTTCATTAAGGTTTTGGATG TAAACGACAATGCTCCAGAGTTTGCCATGTTTTATGAGACCTTTGTCTGTGAAAATGCAAAGGCAGAACAGCTGATACA AACATTGAGTGCTGTTGATAAAGATGACTCTTACAGTGGACACCAGTTTTCATTCAGCATAGCTCCAGAGGCAGCCAGC AGCTCAAACTTTACACTCCAGGACAACAGAGACAACACAGCGGGGATTTTCACCCGAAAAATCAGATATAACCGGCATG AAATGAGTACCTACCTTTTGCCAGTGGTAATATCAGACAATGACTACCCTATCCAGAGCAGCACTGAAACAGTGACTAT TCGTGTATGTGCTTGTGACCATCGAGGAAAGATGCTGTCCTGTAATGCGGAAGCCTTGATTCATCCTACTGGTCTTAGC ACTGGGGCTCTTATTGCCATTCTTCTCTGTATCATTATATTACTTGTTACAGTGGTGTTGTTTGCAGCACTGAGACGGC AAAGGAAAAAAGAGCCTTTGATTATTTCCAAAGAAGACATCAGAGACAACATTGTCAGTTATAATGATGAAGGTGGTGG AGAGGAAGACACCCAGGCATTTGATATCGGCACGCTGAGGAATCCCGAAGCCATAGATGATAATAAATTACGCAGAGAC ATTGTGCCAGAAACGCTTTTTATGCCACGGCGGACTGCAACAGCCCGAGATAACACGGATGTCAGAGATTTCATTAACC AAAGGTTAAAGGAGAATGATACAGACCCAGCAGCCCCCCCGTATGACTCGTTAGCGACCTACGCATACGAAGGTAATGG TTCTGTGGCAGAGTCCCTCAGCTCTCTGGAGTCGGTGACTACAGACGGAGACCAGGACTATGATTACCTCAGTGACTGG GGGCCGCGGTTTAAAAAGTTGGCAGATATGTATGGCTCAATGGACAGTGACAAAGACTCTTAATATGTTGCCTCTAG
Citation	Luo J, Wang H, Lin J, Redies C. Cadherin expression in the developing chicken cochlea. Dev Dyn. 2007 Aug;236(8):2331-7.
Copyright	Copyright © 2007 Wiley-Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001001758).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

31-44

stage 37

stage 40

stage 44

Ear/Otic Placcode

Entry 3

GEISHA Id	Cadherin6B.Taneyhill.2005	Data Source	Publication
Complete cDNA Template Probe	show GGTTCGAAGACGATCAGATAGAGAGCCCCCTCGGCTCGGGCTGCCTGCATGCGGGAGTTAAAAAGTGCTGCCGGTCGAG CGGCAGCCCCAGTGAGCGGCGGGGAGGCTGAGAGCGGGCAGCAGGGGCCGGGAGCCGCCGCCACCCATCCCAGCTTGGC CCTGCGAGCCGAGATCCTCTGAGACTGCAAAGACTACTTAAAGAACGAAGACGGCATGAGATTGGATTTGATCCAGTAA AATAGGTTAGCTTGAGGACAAGAAAAACAGTTGCTATTTAGATCTTCTCTTGTTGCCGTGATGAGAACTTACCATTGCT TCTGGTTGCTGTTTTGGGCTGGCCAGCCCCACCAAAGTTTTTTAACTTTGCTGTCCAAAAGGACTAGTGGCTTTCCAGA GAAGGAAAAGGTTTTGGTATTGTCTGGAAACAGCAGGAGAGACCTCAGTCGTTCCAAAAGGAGTTGGATGTGGAATCAG TTCTTTTTACTGGAAGAATATACAGGAACTGACTATCAGTATGTTGGCAAGCTGCATTCAGACCAGGATAAAGGAGATG GATCACTTAAGTACATCCTTTCTGGAGATGGAGCAGGAGACCTCTTCATTATCAATGAAAACACTGGTGACATCCAAGC CACAAAGAGACTAGACAGAGAAGAAAAGCCTGTGTACATACTTCGTGCCCAGGCTATAAACCGAAGAACTGGAAGACCA GTGGAACCAGAATCTGAGTTCATCATCAAGATCCATGATATCAACGACAATGAGCCAATGTTTACAAAGGACGTTTACA ATGCCAGCATTCCAGAAATGTCAGATGTTGGTACCTTTGTTGTGCAAGTCACTGCAACTGATGCCGATGATCCTACATA TGGGAACAGCGCTAAAGTTGTCTACAGCATTCTCCAGGGACAACCATATTTCTCTGTAGAATCTGAGACAGGTATTATT AAAACTGCTTTGCTAAACATGGACCGTGAAAACAGGGAGCAATATCAAGTGGTCATCCAAGCTAAGGACATGGGAGGCC AGATGGGCGGATTATCAGGAACCACCACTGTGAACATCACACTGACCGACGTAAATGACAATCCTCCTCGGTTCCCCCA GAGCACCTACCAATTCAGAGCTCCTGAGTCTACGCCACCTGACTCACCAATTGGCAGGATTAAAGCTAATGATGCAGAT GTGGATGAAAATGCAGAGATTGAATACAGCATCACTGAGGGGGATGGATATGACATGTTTGGAATTACCACAGACAAGG ACACACAGGAAGGAATTATAACTGTCAAAAAGGCACTGGATTTTGAAAATAAAAACTTGTATATTCTGAAGGTGGAAGC CACCAATACTCACGTGGACCCTCGATTCCTCTACTTGGGGCCATTCAAGGATTCAGCCACAATCAGAATTCAAGTGGAA GATGTAGATGAACCCCCTGTGTTCAGCAGACCAGCATATATAATTGAAGTGAAAGAAGATGTTCCAATAAACAGTGTAA TAGGAACAGTAACAGCACAGGATCCAGATGCTGCCAAGAACCCTGTCAAGTATTCTGTAGATCGACACACTGATATGGA CAGAGTATTCAACATCAACTCAGGAAATGGTTCGATATTTACGTCAAAAACTCTTGACCGGGAAACATTGCTATGGCAC AACATTACAGTAATAGCAGCAGAGATCAACAACCCAAAACAAAGCAGCCGTGTCCCAGTGTTCATTAAGGTTTTGGATG TAAACGACAATGCTCCAGAGTTTGCCATGTTTTATGAGACCTTTGTCTGTGAAAATGCAAAGGCAGAACAGCTGATACA AACATTGAGTGCTGTTGATAAAGATGACTCTTACAGTGGACACCAGTTTTCATTCAGCATAGCTCCAGAGGCAGCCAGC AGCTCAAACTTTACACTCCAGGACAACAGAGACAACACAGCGGGGATTTTCACCCGAAAAATCAGATATAACCGGCATG AAATGAGTACCTACCTTTTGCCAGTGGTAATATCAGACAATGACTACCCTATCCAGAGCAGCACTGAAACAGTGACTAT TCGTGTATGTGCTTGTGACCATCGAGGAAAGATGCTGTCCTGTAATGCGGAAGCCTTGATTCATCCTACTGGTCTTAGC ACTGGGGCTCTTATTGCCATTCTTCTCTGTATCATTATATTACTTGTTACAGTGGTGTTGTTTGCAGCACTGAGACGGC AAAGGAAAAAAGAGCCTTTGATTATTTCCAAAGAAGACATCAGAGACAACATTGTCAGTTATAATGATGAAGGTGGTGG AGAGGAAGACACCCAGGCATTTGATATCGGCACGCTGAGGAATCCCGAAGCCATAGATGATAATAAATTACGCAGAGAC ATTGTGCCAGAAACGCTTTTTATGCCACGGCGGACTGCAACAGCCCGAGATAACACGGATGTCAGAGATTTCATTAACC AAAGGTTAAAGGAGAATGATACAGACCCAGCAGCCCCCCCGTATGACTCGTTAGCGACCTACGCATACGAAGGTAATGG TTCTGTGGCAGAGTCCCTCAGCTCTCTGGAGTCGGTGACTACAGACGGAGACCAGGACTATGATTACCTCAGTGACTGG GGGCCGCGGTTTAAAAAGTTGGCAGATATGTATGGCTCAATGGACAGTGACAAAGACTCTTAATATGTTGCCTCTAG
Citation	Taneyhill LA, Bronner-Fraser M. Dynamic alterations in gene expression after Wnt-mediated induction of avian neural crest. Mol Biol Cell. 2005 Nov;16(11):5283-93. Epub 2005 Aug 31.
Copyright	Copyright 2004, MBC Online by The American Society for Cell Biology.
Comments	Insufficient information provided in publication to verify exact sequence to synthesize probe. Sequence below was obtained from NCBI (NM_001001758).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-16

stage 16

Neural Crest
Unlabeled

Entry 4

GEISHA Id	Cadherin6B.Taneyhill.2007	Data Source	Publication
Complete cDNA Template Probe	show GGTTCGAAGACGATCAGATAGAGAGCCCCCTCGGCTCGGGCTGCCTGCATGCGGGAGTTAAAAAGTGCTGCCGGTCGAG CGGCAGCCCCAGTGAGCGGCGGGGAGGCTGAGAGCGGGCAGCAGGGGCCGGGAGCCGCCGCCACCCATCCCAGCTTGGC CCTGCGAGCCGAGATCCTCTGAGACTGCAAAGACTACTTAAAGAACGAAGACGGCATGAGATTGGATTTGATCCAGTAA AATAGGTTAGCTTGAGGACAAGAAAAACAGTTGCTATTTAGATCTTCTCTTGTTGCCGTGATGAGAACTTACCATTGCT TCTGGTTGCTGTTTTGGGCTGGCCAGCCCCACCAAAGTTTTTTAACTTTGCTGTCCAAAAGGACTAGTGGCTTTCCAGA GAAGGAAAAGGTTTTGGTATTGTCTGGAAACAGCAGGAGAGACCTCAGTCGTTCCAAAAGGAGTTGGATGTGGAATCAG TTCTTTTTACTGGAAGAATATACAGGAACTGACTATCAGTATGTTGGCAAGCTGCATTCAGACCAGGATAAAGGAGATG GATCACTTAAGTACATCCTTTCTGGAGATGGAGCAGGAGACCTCTTCATTATCAATGAAAACACTGGTGACATCCAAGC CACAAAGAGACTAGACAGAGAAGAAAAGCCTGTGTACATACTTCGTGCCCAGGCTATAAACCGAAGAACTGGAAGACCA GTGGAACCAGAATCTGAGTTCATCATCAAGATCCATGATATCAACGACAATGAGCCAATGTTTACAAAGGACGTTTACA ATGCCAGCATTCCAGAAATGTCAGATGTTGGTACCTTTGTTGTGCAAGTCACTGCAACTGATGCCGATGATCCTACATA TGGGAACAGCGCTAAAGTTGTCTACAGCATTCTCCAGGGACAACCATATTTCTCTGTAGAATCTGAGACAGGTATTATT AAAACTGCTTTGCTAAACATGGACCGTGAAAACAGGGAGCAATATCAAGTGGTCATCCAAGCTAAGGACATGGGAGGCC AGATGGGCGGATTATCAGGAACCACCACTGTGAACATCACACTGACCGACGTAAATGACAATCCTCCTCGGTTCCCCCA GAGCACCTACCAATTCAGAGCTCCTGAGTCTACGCCACCTGACTCACCAATTGGCAGGATTAAAGCTAATGATGCAGAT GTGGATGAAAATGCAGAGATTGAATACAGCATCACTGAGGGGGATGGATATGACATGTTTGGAATTACCACAGACAAGG ACACACAGGAAGGAATTATAACTGTCAAAAAGGCACTGGATTTTGAAAATAAAAACTTGTATATTCTGAAGGTGGAAGC CACCAATACTCACGTGGACCCTCGATTCCTCTACTTGGGGCCATTCAAGGATTCAGCCACAATCAGAATTCAAGTGGAA GATGTAGATGAACCCCCTGTGTTCAGCAGACCAGCATATATAATTGAAGTGAAAGAAGATGTTCCAATAAACAGTGTAA TAGGAACAGTAACAGCACAGGATCCAGATGCTGCCAAGAACCCTGTCAAGTATTCTGTAGATCGACACACTGATATGGA CAGAGTATTCAACATCAACTCAGGAAATGGTTCGATATTTACGTCAAAAACTCTTGACCGGGAAACATTGCTATGGCAC AACATTACAGTAATAGCAGCAGAGATCAACAACCCAAAACAAAGCAGCCGTGTCCCAGTGTTCATTAAGGTTTTGGATG TAAACGACAATGCTCCAGAGTTTGCCATGTTTTATGAGACCTTTGTCTGTGAAAATGCAAAGGCAGAACAGCTGATACA AACATTGAGTGCTGTTGATAAAGATGACTCTTACAGTGGACACCAGTTTTCATTCAGCATAGCTCCAGAGGCAGCCAGC AGCTCAAACTTTACACTCCAGGACAACAGAGACAACACAGCGGGGATTTTCACCCGAAAAATCAGATATAACCGGCATG AAATGAGTACCTACCTTTTGCCAGTGGTAATATCAGACAATGACTACCCTATCCAGAGCAGCACTGAAACAGTGACTAT TCGTGTATGTGCTTGTGACCATCGAGGAAAGATGCTGTCCTGTAATGCGGAAGCCTTGATTCATCCTACTGGTCTTAGC ACTGGGGCTCTTATTGCCATTCTTCTCTGTATCATTATATTACTTGTTACAGTGGTGTTGTTTGCAGCACTGAGACGGC AAAGGAAAAAAGAGCCTTTGATTATTTCCAAAGAAGACATCAGAGACAACATTGTCAGTTATAATGATGAAGGTGGTGG AGAGGAAGACACCCAGGCATTTGATATCGGCACGCTGAGGAATCCCGAAGCCATAGATGATAATAAATTACGCAGAGAC ATTGTGCCAGAAACGCTTTTTATGCCACGGCGGACTGCAACAGCCCGAGATAACACGGATGTCAGAGATTTCATTAACC AAAGGTTAAAGGAGAATGATACAGACCCAGCAGCCCCCCCGTATGACTCGTTAGCGACCTACGCATACGAAGGTAATGG TTCTGTGGCAGAGTCCCTCAGCTCTCTGGAGTCGGTGACTACAGACGGAGACCAGGACTATGATTACCTCAGTGACTGG GGGCCGCGGTTTAAAAAGTTGGCAGATATGTATGGCTCAATGGACAGTGACAAAGACTCTTAATATGTTGCCTCTAG
Citation	Taneyhill LA, Coles EG, Bronner-Fraser M. Snail2 directly represses cadherin6B during epithelial-to-mesenchymal transitions of the neural crest. Development. 2007 Apr;134(8):1481-90. Epub 2007 Mar 7.
Copyright	Division of Biology, California Institute of Technology, Pasadena, CA 91125, USA.
Comments	Insufficient information provided in publication to verify exact sequence to synthesize probe. Sequence below was obtained from NCBI (NM_001001758).