GEISHA - A Chicken Embryo Gene Expression Database
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PRTG
protogenin

Gene
Official SymbolPRTG
Official Full Nameprotogenin
CGNC ID3210
also known asprotogenin|protogenin homolog (Gallus gallus), Protogenin, PRTG
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001030548
PolypeptideNP_001025719
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.29783
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human283659ENSG00000166450MIM:613261
Mouse235472ENSMUSG00000036030All phenotypic alleles (5):Targeted, other(2) Gene trapped(3) MGI:2444710
Xenopus100496178922462
Zebrafish563834, 572241ZDB-GENE-061204-4, ZDB-GENE-060302-1ZFIN:ZDB-GENE-061204-4, ZFIN:ZDB-GENE-060302-1
Gene Ontology
Molecular Function
Biological Processmulticellular organismal development
Cellular Componentintegral component of membrane
Links to other databases
Entrez Gene415407
Ensembl GeneENSGALG00000004361
KEGGgga:415407

Entry 1

GEISHA IdPRTG.Vesque.2006Data SourcePublication
Complete cDNA Template Probeshow
ATGCGGAGAGTAGGGCCGGGACGGGCGCGCCGGGGCCGCTCCGTCCGCCCCCTGTCTCCTCCCCTCGGCCGCTGACCGC
TCTCTCGCGGCGGCCGGCGGGGCATGCCAGCCGCGTCCCGCTGCATGGCGCTGCTCCGGGCGCTGCTCGGGGCGCTGCT
CCTCCCGATGCCAGGAGTGTGGTGCTTTAGCGAGCTGTTTTTTGTGAGAGAGCCTCAAGATGTGACTGCCTCCAGGAAG
GATGCGGTGGTGTTAGACTGCCAGGCCCGTGGGGAAGCTCCTATAACTGTCACGTGGCTGAAAAATGGAGGCAAAGTGT
CTGAAAATGAAAGGATCTACACCTTATCCAATGGCTCTTTGTACATCAGTGAGGTGGAAGGAAGGAAAGGAGAGCAGTC
TGATGAAGGATTTTACCAGTGCTTGGCTCTGAACAAGTACGGAGCCATTCTCAGTCAAAAAAGTCACCTTACGCTAGCA
ACCATTTCTGCTTTTGAAGTTCAGCCACTTTCAACTGAGGTTCAAGAAGGTGGAGTAGCTCGATTTACCTGTAAAATAG
CAGCAAACCCTCCTGCTGTTGTGACATGGGAAGTGAATCGAACAACTTTGCCTTTATCTATGGACAGGATAACTGCTCT
ACCTACAGGAGTTCTTCAGATCTATGGTGTTGAACAGAAGGATGCAGGAAATTACCGATGTGTTGCCACAACGATAACC
AGTAGACGTAAGAGTGCTGAAGCAACGCTGAATGTTATTCCAGCTTCAGACTTAAAGCCTTTTCACAAACCAGCTATAA
TAGCAGGTCCTCAAAACGTTACAGCATCTCTTCATCAAACTGTCATACTGGAGTGTGTAGCCACAGGGAATCCAAAGCC
AATCATCTCATGGAGCCGGTTAGACCATAAGTCCATTGATGTCTTCAATACCCGTGTCCTTGGAAATGGGAACCTCATG
ATCTCTGATGTGAAGGTGCAGCATGCAGGCGTATATGTCTGTCGAGCCACTATTCCAGGCACACGAAACTTCACAGTAG
CAATGGCAACTCTCACTGTGCTGGCTCCTCCTTCATTTGTGGAATGGCCGGAGAGTTTAACAAGGCCTAGAGCTGGTAC
TGCTCGTTTTGCCTGTCAGGCAGAAGGAATTCCTGCCCCCAAAATTTCATGGTTGAAAAATGGAAGGAGAATACACTCC
AATGGCAGAATTAAAATGTACAACAGTAAATTGGTGATTAACCAGATCATTCCTGAAGATGATGCCATTTATCAGTGCA
TGGCTGAGAATAGTCAGGGATCTGTACTCTCCAGGGCCAGGCTTACTGTAGTTATGTCGGAAGATAGACCCAGCGCACC
TTATAACGTCCATGCTGAAACGATGTCAAGCTCAGCGATCCTGCTAGCATGGGAGAGGCCACTCTATAATTCAGACAAA
GTGATTGCATACTCCGTGCATTACATGAAAGCAGAAGGTTTAAATAATGAAGAGTACCAAGTGGTCATCGGAAATGATA
CAACTCATTACATTATTGATGACTTGGAACCAGCCAGCAACTATACCTTCTATATTGTAGCTTACATGCCTCTGGGAGC
CAGTCAGATGTCAGATCATGTGACTCAGCACACCCTTGAGGATGTTCCCTTGAGAGCTCCTGAAATTAGTTTGACAAGC
CGGAGTCCTACAGATATTCTTATCTCTTGGTTGCCAATTCCTGCAAAATACAGGAGAGGCCAGGTGGTGCTGTATCGTC
TGTCTTTCCGCCTCAGCACAGATAGCAAAATCCAAGTCTTGGAGCTTCCAGGAACTTCAGATGAGTACCTCCTTGAAGG
GCTGCGGCCTGACAGTGTCTACTTGGTTCGTATTACTGCTGCAACAAGGATTGGCTGGGGAGAGGCATCTTTGTGGACC
TCCCACCGAACTCCAAAAGCAACAAGTGTGAAAGCACCGAAGTCTCCTGAGCTGCGTTTGGAACCAATAAATTGTACGA
CTATTACAGTACAGTGGCAGCAGGACTCTGATGACACTGCAGCTATTCAAGGGTACAAGTTGTATTACAAAGAAGAAGG
CCAGCAGGAAAATGGACCAATTTTGTTGGATGCCAGTGATCTTGAGTATACTGTCAGTGGTTTAGATCCTAGAAGAAAG
TATCATGTAAGGCTGCTGGCATATAACAATATGGAAGAAGGTTATCAAGCAGACCAAACAGTCAGCACTCCAGGATGTG
TCTCTGTCCGTGATCGCATGGTGCCACCACCACCACCCCCTCACCATCTCTATGCTAAAGCTAACACTTCATCTTCTAT
CTACCTTCACTGGGGAAAGCCTGCCTTTACATCTGCACAGGTCATTAATTACACAATCCGCTGCAACCCAGTAGGACTG
CAGAATGCATCTCTGGTTCTGTACCTTCAAACGTCAGAGACTCACATGTTAGTCCAGGGTCTTGAACCAAAAACCATGT
ATGAATTTGCAGTTCGGTTGCATGTGGACCAGCTCTCTAGTCCCTGGAGTCCAGTAGTCTATCATACTACCCTTCCAGA
AGCACCATCTGGCCCTCCAGTAGGAGTGAAGGTGACTTTGATAGAAGATGATACTGCTTTGGTTTCCTGGAAGCCACCT
GATGGTCCTGAAACAGTTGTTACACGATACACTATACTATATGCATCCAGGAAGTCTTGGATTGCTGGGGAATGGCAAG
TGTTGCACAGAGAAGGAGCAATGACTATGGCTTTGCTGGAAAATCTTGTAGCAGGAAACGTCTACTTGGTCAAAATAGC
AGCCTCCAATGAAGTGGGAGAAGGACCCTTCTCAAACGTGGTGGAACTTGCTGTCCTGCCAAAGGAGACATCAGAGTCT
AATCAGAGGCCTAAACGCTTGGATTCAGGAGATTCCACAGCTTATTCTGACTATTACCATCTGGACCAAAAATCAATGA
CTGGCATTGTTGTTGGGGTTTGCATAGCCTTGACCTGCATCCTTATCTGCATCCTGATCTTAATTTATCGCAGTAAAGC
CAGGAAAACATCTGCTCCTAAACCTGTGCAGCAAAGCACTGACCAGCTGTCACATACCAACATCTCATTAGCCAGTGCT
AATGAGGTGGAGAAGAGCATTGATGGAATCGCAGAGAATGCAGAATCCTTATTGCCAATGATAGTGGGAAACAGCTTCA
TTGATGCTAAGGGGGGATCCGATCTTATTATTAACAGCTATGGGCCTGTCACAAAGGCCAACTGCAAGAAGAGGTGGCT
ATTCTTCCAGGATACTAAGAAGATGAAGACTGAGGAGCCTCAGAGAAGATTTGTCCAAGCAGTGTGTCTTTATCAGCCA
GGTACCACTGTGCTGATAAGTGAGGATGATTCCCCCAGCTCTCCTGGCCAACAGTCTAACTTCCAGGTGCCGTTCAGTA
TTGCTGCTGATACAGAGCATTCAGCCAACAGTGAGGGAAGTCATGAGACTGGTGACTCTGGAAGATTTTCACATGAGTC
CAATGATGAGCTACACCTCTCCTCTGTAACAAGTGCCACTCCTTGTGCTACCAGTCATTTTGTAAGCAGTGACTTGGGT
AAGAATGTGATGAATTCTACCATAAGTGACAGCAAAGAATCTCCGCTGCTGTTTGCTACTGACCAGCCTGCTACCTCAC
CTCTTCAGATACACTCTGCAGTGCAAAACTGACACCCTTAGGACCACATCATACATTCTTACAGTGTATGTCTGTTCGA
AGGACAATGAACAGGGAGCCAAAGTTATATTGTGGAAAGCTTGACTAACTCAACAGGTGATCCCATATTTCTGTTGAAT
GGGTTTTGTTTTTTTGTTTGTTTAACTCATTCATTTTGAATGTTCGATGGTCAACAAATGTGAAAGGACAGAGAAGATT
TCTGACTAGAGTTGAAAATATGTCACTGGAGCAAAGGGAAGTCTTTTGGCTCTTTTGCTGACTATCTACCTCAGTTTGC
CGAGAGGTGAACTCTGAAAGACAACTGCTTTACCTCGTTTGTGTTGTATTNGGTCTCAGCTATGGAACTGATGATACTT
CCTAGTAGTNTTTAGGTTTCTTTTTTTTTCCCAGTTGCGTATAGAATGCGTGTGTTNGGGGGGTGTGTATGCTCAGTAA
TCAGGGAGTTGTATAGGTAGATGAACAAGATTGTTTAGCTGAAGCTCTGTCTTTAAAAAGAAGGATATCTCAGAATAGA
AAATGTAATGTTTTAATGTGGCGGATCTAAACAGTGTTCAAAAATGCAGAAACTGGAGTTGGTGCTTCCGTTTGTACAG
CCACATGAAATCTTTTGTACCTCTTGATTTCTCATAGCTCCAGGAAGCCTAGGACAGTGCCTTTCCCCAGAAACTTGTG
CCATCGACTGCTGACAGGATGTATCCTTACAGCACTAGGGCACATTGAGTTCCCCACGGTGACAAATACTGTCAATTTA
TTGACAATTAATGCTAAAAAGCATGGCAAAATGAAGAAGTATTCAGTATGTCCAAGCAGTTTGACTCTGCCTAAGAGAT
ATGGAATAGATGATAATGCTGAGTACTCTGGTGTTGCAGTACTTCTTAGCAATGGTGCCTTGCATTATATATAATGAAA
TTACTGATTTGCCTTATGCCTTTTTAGTATTTATAAAATTGCTTTGGATTTTGGAAAGATGCCTTAAATGCTTCTTAGA
TGTAAACTGCGTTATCAGCTCATAGTTTGCTTTTTACGCAGCTTTGAATGCTGATAAGCACTGCTAGCATCATGGTATG
TCTCAGAACTGTTTTTGGGATGCAACCCTGCTCCTCGCCTTTGCCTAGTATGCTGTTAGACAGGAATTTTAGCTCAGGG
AGTGACATAAGCCCATCTAAAACTCTACTATGAGAAATAAGAAGCCAGAGCTTTAGTTGAAGAGTCTGTTGAAGGACAC
AAGTAGTGCTATTGCCTTGAACCCATACAATTCCTGTTTTATACTACCTCTTTTAAAAGTTATTCTAGTGTGTTGTGGT
GCTTGTTTTTTTGTTCATTTGTTTGTTTTTCCTGTACTCAGGGAACAGTTTGTTACTTTGAGCTGCCTCATGAAAATGT
GGAGCAAACTGACAGGGTATCATGTTTTATTTCTTAATGGGGGTGGGAG
CitationVesque C, Anselme I, Couvé E, Charnay P, Schneider-Maunoury S. (2006) Cloning of vertebrate Protogenin (Prtg) and comparative expression analysis during axis elongation. Dev Dyn. 2006 Oct;235(10):2836-44.
CopyrightCopyright © 2006 Wiley-Liss, Inc.
CommentsAccording to the authors: To isolate the chicken and zebrafish orthologues of Prtg, we designed two degenerate oligonucleotides, prtg F corresponding to amino acids 383-389: GA(CT)GA(CT)GC(N)AT(ACT)TA(CT)CA(AG)TG and prtg R corresponding to amino acids 485-492: GGCAT(AGTA(N)GC(N)AC(AGT)AT(AG)TA.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
Hensen's Node
Hindbrain
Primitive Streak
 
7-12
stage 8
Neural Plate/Tube
Paraxial Mesoderm
Somites
 
13
stage 13
stage 13
stage 13
Dermomyotome
Midbrain
Neural Plate/Tube
Somites
roof plate
sub-lip domain

Entry 2

GEISHA IdProtogenin.Toyoda.2005Data SourcePublication
Complete cDNA Template Probeshow
ATCTGCTCCTAAACCTGTGCAGCAAAGCACTGACCAGCTGTCACATACCAACATCTCATTAGCCAGTGCTAATGAGGTG
GAGAAGAGCATTGATGGAATCGCAGAGAATGCAGAATCCTTATTGCCAATGATAGTGGGAAACAGCTTCATTGATGCTA
AGGGGGGATCCGATCTTATTATTAACAGCTATGGGCCTGTCACAAAGGCCAACTGCAAGAAGAGGTGGCTATTCTTCCA
GGATACTAAGAAGATGAAGACTGAGGAGCCTCAGAGAAGATTTGTCCAAGCAGTGTGTCTTTATCAGCCAGGTACCACT
GTGCTGATAAGTGAGGATGATTCCCCCAGCTCTCCTGGCCAACAGTCTAACTTCCAGGTGCCGTTCAGTATTGCTGCTG
ATACAGAGCATTCAGCCAACAGTGAGGGAAGTCATGAGACTGGTGACTCTGGAAGATTTTCACATGAGTCCAATGATGA
GCTACACCTCTCC
CitationToyoda R, Nakamura H, Watanabe Y. Identification of protogenin, a novel immunoglobulin superfamily gene expressed during early chick embryogenesis. Gene Expr Patterns. 2005 Aug;5(6):778-85.
CopyrightReprinted with permission from Elsevier. Copyright © 2005 Elsevier B.V. All rights reserved.
CommentsThe sequence below was obtained from NCBI using the GenBank Accession No. (AB185923) and primers provided in the publication: protogenin forward primer, 5'-ATCTGCTCCTAAACCTGTGCA-3' (nucleotides 3012–3032); and reverse primer, 5'-AAGGAGTGGCACTTGTTACAGAG-3' (nucleotides 3520–3498).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Primitive Streak
 
4-6
stage 4
stage 6
Early Endoderm
Early Mesoderm
Epiblast
Head Process
Hensen's Node
Neural Plate/Tube
Primitive Streak
Primitive Groove
7-12
stage 8
stage 10
Diencephalon
Hindbrain
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Paraxial Mesoderm
Somites
Spinal Cord
Floor Plate
Neural Folds
13-18
stage 13
stage 13
stage 15
stage 16
stage 16
stage 16
stage 18
stage 18
stage 18
stage 18
Dermomyotome
Diencephalon
Hindbrain
Isthmus/MHB
Midbrain
Neural Plate/Tube
Retina
Somatopleure
Spinal Cord
Prosomere 2
Zona Limitans Interthalamica
19-22
stage 19
stage 20
stage 21
stage 22
Dermomyotome
Hindbrain
Midbrain
Neural Plate/Tube
Tectum
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.29783

Mouse

EmageMGI:2444710
EurexpressMGI:2444710
MGI GXDMGI:2444710

Frog

Xenbase922462

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-061204-4, ZDB-GENE-060302-1
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