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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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TSHZ3
teashirt zinc finger homeobox 3

Gene

Official Symbol	TSHZ3
Official Full Name	teashirt zinc finger homeobox 3
CGNC ID	3346
also known as	ZNF537, teashirt homolog 3\|teashirt family zinc finger 3\|zinc finger protein 537
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	XM_414125
Polypeptide	XP_414125

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	57616	ENSG00000121297		MIM:614119
Mouse	243931	ENSMUSG00000021217	All phenotypic alleles (2):Targeted, knock-out(1) Targeted, other(1)	MGI:2442819
Xenopus	100491887, 100036808			852850
Zebrafish	565811		ZDB-GENE-100319-2, ZDB-GENE-100322-1	ZFIN:ZDB-GENE-100319-2, ZFIN:ZDB-GENE-100322-1

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	415762
Ensembl Gene
KEGG	gga:415762

Entry 1

GEISHA Id	ChEST263o14	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GGCTAGCACGTGACAACAGCAAAGACATCTGCAGTCGTGTCATTCATGTCAAACTCGCCGCTACGCGAGAATGCCTTGT CAGATATATCTGATATGCTGAAGAACCTGACAGAAAGTCACACATCAAAATCTTCCACACCTTCCAGCATATCTGAGAA ATCTGACATTGATGGTACCACAATAGAGGAACCAGAAGAGAGTACACCAGCTCAGAAAAGGAAGGGACGTCAGTCTAAC TGGAACCCTCAGCACTTGCTCATCTTGCAGGCCCAGTTTGCAGCTAGTTTACGGCAGACTTCAGAGGGGAAATACATAA TGTCAGACTTGAGCCCTCAAGAAAGAATGCACATTTCCAGGTTTACGGGACTTTCAATGACCACGATTAGCCATTGAGC CAATGTGAAATACCAGCTCCGAAGGACGGGGGGAACTAAGTTCCTTAAAAATTTGGACACTGGGCATCCAGTGTTCTTT TGTAATGACTGCGCTTCACAGATCAGAACTCCTTCAACTTATATCAGTCATCTTGAATCGCATCTGGGTTTCAGGTTAA GGGACTTGTCCAAACTGTCCAGTGAACAGATTAACAATCAGATAGCACAAGCAAAGTCACCGTCTG
Comments	No specific expression detected st 11.

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

Unlabeled

7-12

stage 8

stage 12

Intermediate Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Spinal Cord
Unlabeled

Ventral view.

13-18

stage 13

stage 16

stage 17

stage 18

Allantois
Amnion
Anterior Intestinal Portal
Gut
Intermediate Mesoderm
Lateral Plate Mesoderm
Limb Buds
Lung
Neural Plate/Tube
Paraxial Mesoderm
Somatic Mesoderm
Somatopleure
Spinal Cord

Ventral view.

19-24

stage 19

stage 20

stage 22

stage 23

Allantois
Gut
Leg Mesenchyme
Lung
Midbrain
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Somatic Mesoderm
Somatopleure
Somites
Spinal Cord
Splanchnic Mesoderm
Wing Mesenchyme

roof plate

stage 25

Allantois
Gut
Leg Mesenchyme
Pharyngeal Arches and Clefts
Somatic Mesoderm
Somites
Wing Mesenchyme

Entry 2

GEISHA Id	TSHZ3.Manfroid.2006a	Data Source	Publication
Complete cDNA Template Probe	show TATGACAACAGCAAAGACATCTGCAGTCGTGTCATTCATGTCAAACTCGCCGCTACGCGAGAATGCCTTGGTCAGATAT ATCTGATATGCTGAAGAACCTGACAGAAAGTCACACATCAAAATCTTCCACACCTTCCAGCATATCTGAGAAATCTGAC ATTGATGGTACCACAATAGAGGAACCAGAAGAGAGTACACCAGCTCAGAAAAGGAAGGGACGTCAGTCTAACTGGAACC CTCAGCACTTGCTCATCTTGCAGGCCCAGTTTGCAGCTAGTTTACGGCAGACTTCAGAGGGGAAATACATAATGTCAGA CTTGAGCCCTCAAGAAAGAATGCACATTTCCAGGTTTACGGGACTTTCAATGACCACGATTAGCCATTGGCTAGCCAAT GTGAAATACCAGCTCCGAAGGACGGGGGGAACTAAGTTCCTTAAAAATTTGGACACTGGGCATCCAGTGTTCTTTTGTA ATGACTGCGCTTCACAGATCAGAACTCCTTCAACTTATATCAGTCATCTTGAATCGCATCTGGGTTTCAGGTTAAGGGA CTTGTCCAAACTGTCCAGTGAACAGATTAACAATCAGATAGCACAAGCAAAGTCACCGTCTGAAAA
Citation	Manfroid I, Caubit X, Marcelle C, Fasano L. Teashirt 3 expression in the chick embryo reveals a remarkable association with tendon development. Gene Expr Patterns. 2006 Oct;6(8):908-12. Epub 2006 May 2.
Copyright	Reprinted with permission from Elsevier. Copyright © 2006 Elsevier B.V. All rights reserved.

Stage

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Location (click to highlight)

Comments (click to highlight)

13-18

stage 15

Foregut
Lateral Plate Mesoderm
Neural Plate/Tube

19-24

stage 21

stage 22

stage 23

stage 24

Lateral Plate Mesoderm
Limb Buds
Neural Plate/Tube
Pharyngeal Arches and Clefts
Somites

Matches SCX expression at this stage
Posterior and anterior expression of hindlimb bud, similar expression observed in forelimb bud.

25-27

stage 27

Limb Buds
Somites

Expression in a narrow stripe of mesenchyme underlying the myotome.
Expression in multiple forming tissues of the limb buds.
Expression in the syndetome, a pre tendon compartment of the somites

Entry 3

GEISHA Id	TSHZ3.Paxton.2010	Data Source	Publication
Complete cDNA Template Probe	show CGACACTTTGCAGGAACTCACTGCCCACATGATGGTGACAGGACATTTCATTAAAGTCACCAACTCTGCCATGAAAAAA GGGAAGCCTATTATAGAAGCCCCAGCAACGCCTACAATAACATCCTTAGTAGATGAGAAGGTCCAGTCTGTGCCACTAG CTGCCACCACTTTCACATCTCCTTCCAATACGCCTTCTAGTGTTTCCCCTAAATTAAATGTTGAAATAAAAAAAGAAGT AGATAAAGAAAGAAGCACTGCTGATGACAAAATGAAAGATAAAGAAAAGTCAAGTGAGGATGAGGAGAAGTATGATATC TCTTCAAAATACCATTACTTGACTGAAAACGACCTAGAAGAAAGCCCTAAAGGGGGACTGGATATATTGAAGTCTTTAG AAAACACAGTTACGTCAGCTATAAATAAAGCCCAGAATGGCACCCCGAGCTGGGGTGGCTACCCCAGCATTCATGCTGC TTATCAGCTGCCTAATATGATGAAGCTGTCATTGGGTTCATCTGGGAAGAGTACACCGTTAAAACCCATGTTTGGAAAC AGTGAATTAGTATCGCCATCTAAAAGCCAGCCCTTGGTATCTCCACCAAGCAGCCAGACCTCACCTGTGCCAAAAACGA ATTTTCATGCCATGGAAGAATTAGTAAAGAAAGTCACTGAGAAGGTGGCTAAAGTAGAGGAAAAAATGAAGGAGCCCGA AGGCAAGCTTTCTCCAATGAAGCGTGCAACGCCTTCACCGTGCAGTAGTGAAGTCAGTGAACCTCTTAAAATGGAGGCC TCCAATGATGGTGGCTTTAAAAGCCAACAGAACAGCCCAGTCCCTCAAAGAGATGGTTGCAAGGACAGTCCAACTGTAG AACCTGTGGAAAACGGG
Citation	Paxton CN, Bleyl SB, Chapman SC, Schoenwolf GC. Identification of differentially expressed genes in early inner ear development. Gene Expr Patterns. 2010 Jan;10(1):31-43. Epub 2009 Nov 11.
Copyright	2009 Elsevier B.V. All rights reserved.
Comments	The cDNA template used to generate the probe was obtained by PCR as described in Paxton et al.