GEISHA - A Chicken Embryo Gene Expression Database
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PDLIM7
PDZ and LIM domain 7

Gene
Official SymbolPDLIM7
Official Full NamePDZ and LIM domain 7
CGNC ID20787
also known asLMP, LMP-4, PDZ and LIM domain protein 7|Enigma 90kDa large protein|Enigma LIM-domain loss protein|Enigma protein alpha|Enigma protein beta|Enigma protein gamma|LIM mineralization protein|LIM mineralizing protein|PDZ and LIM domain 7 (enigma)
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001005345
PolypeptideNP_001005345
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.48638
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human9260ENSG00000196923MIM:605903
Mouse
Xenopus595027, 779123, 3804265860424
Zebrafish393813ZDB-GENE-040426-2092ZFIN:ZDB-GENE-040426-2092
Gene Ontology
Molecular Functionprotein binding, zinc ion binding
Biological Processcell differentiation, multicellular organismal development, ossification
Cellular Componentcytoskeleton, Z disc
Links to other databases
Entrez Gene416362
Ensembl GeneENSGALG00000026159
KEGGgga:416362

Entry 1

GEISHA IdPDLIM7.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerTTATAAAAGCTTGCGGCCGCAGAATATAGCACCGCCCTCAACAAAAC
Reverse cDNA Template PrimerGCTCTAGAAATTAACCCTCACTAAAGGCGAAGAAACCACCCTCATCCAGcDNA Template Length517
Complete cDNA Template Probeshow
GGCCCTTTGGGGCCAGCTCACCTCCGAACCCACGGCCTGGGCTGGTGACGAAACCCGTGACGTACGTGCCCCTGGCGCC
CGCCTGCACCCCCCAGCACAATGGCCAGGTCTCCGTACCGGACCCATCCCCGGGAGCAGCAATGAAGACAGAACCAGGA
TTGGCCCCCAGGACCCCTGCTGCCACCCCTGGCCCTACCAGCCGCCCGCCCTGGGCTGTGGACCCTTCATTTGCTGAGC
GCTACGCCCCAGACAAGACGAGCACGGTGCTGAGCAAGCACAGCCAGCCGGCCACGCCAACCCCCATGCAGAACCGCAG
CTCCATCGTGCAGGCAGCCCAGCAGGCACCTGAGAGCCCCGGCCGTACACCCCTCTGTTACAAGTGCAACAAGATCATC
AGGGGACGCTACCTCGTGGCACTGGGACATTATTACCACCCCGAGGAGTTCACCTGCTGCCAGTGCAGGAAGGTGCTGG
ATGAGGGTGGTTTCTTCGCCTTTAGTGAGGGTTAATTTCTAGAGCAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
Widespread Expression
 
13-18
stage 18
Ubiquitous
 
19
stage 19
Ubiquitous
 

Entry 2

GEISHA IdLMP-4.Krause.2004Data SourcePublication
Complete cDNA Template Probeshow
GAAACGTTGCGGCGCGACCCGCTCGGCCCCGCACCGCCGGGCGACCCTGCCCAGCCGCGGAGATGGGCGAGATGGAGTC
CTATAAGGTGATGCTGAACGGGCCGGCGCCCTGGGGGTTCCGGCTGCAGGGAGGGAAGGACTTCAGCATGCCGCTCTCC
ATCTCCAGGCTGACTCCAGGTGGAAAGGCTGCCCAGGCCGGCGTGGGAGTGGGCGACTGGGTGCTGTACATCGACGGGG
AGAGCACCGGCACCATGACACACATCGAGGCCCAGAACAGGATCCGCGCCTGCGGGGACAGGCTCTGCCTCACCCTGAG
CAGAGCCCAGAACCACCTGGGGAAGCCGCAGAAGGACTCACTCCCCTGCTCTGAGCCCCCGAAATATAACTTCGCTCCC
AGCACCGCCCTCAACAAAACAGCTCGGCCCTTTGGGGCCAGCTCACCTCCGAACCCACGGCCTGGGCTGGTGACGAAAC
CCGTGACGTACGTGCCCCTGGCGCCCGCCTGCACCCCCCAGCACAATGGCCAGGTCTCCGTACCGGACCCATCCCCGGG
AGCAGCAATGAAGACAGAACCAGGATTGGCCCCCAGGACCCCTGCTGCCACCCCTGGCCCTACCAGCCGCCCGCCCTGG
GCTGTGGACCCTTCATTTGCTGAGCGCTACGCCCCAGACAAGACGAGCACGGTGCTGAGCAAGCACAGCCAGCCGGCCA
CGCCAACCCCCATGCAGAACCGCAGCTCCATCGTGCAGGCAGCCCAGCAGGCACCTGAGAGCCCCGGCCGTACACCCCT
CTGTTACAAGTGCAACAAGATCATCAGGGGACGCTACCTCGTGGCACTGGGACATTATTACCACCCCGAGGAGTTCACC
TGCTGCCAGTGCAGGAAGGTGCTGGATGAGGGTGGTTTCTTCGAGGAAAAGGGCTCCATCTTCTGCCCCAAGTGCTACG
ACACGCGCTATGCGCCCAGCTGTGCTAAATGCAAGAAGAAGATCACCGGGGAGGTCATGCATGCACTCAAGATGACCTG
GCACGTGCAGTGCTTCACCTGTGCAGCCTGCAAAACTCCCATCCGCAACCGTGCCTTCTACATGGAGGAGGGACAGCCC
TACTGCGAGAGAGACTATGAGAAGATGTTTGGCACCAAGTGCCGTGGCTGTGACTTCAAGATCGATGCTGGGGACCGGT
TCCTGGAGGCACTGGGCTTCAGCTGGCATGACACTTGCTTCGTCTGTGCGATCTGCCAGACCAATCTGGAAGGGAAGAC
ATTTTACTCCAAGAAGGACAAGCCGCTGTGCAAGAGCCATGCTTTCTCCCACGTGTGATGGGGCAAGAGTTCAGCTGTG
CCCATGCATACCCCTGGCCCTGCATGCTCCTTTCCCACCTCTTCCCGTGCCCCAGGTAGCCAGGCTGAGACTTCACCCC
TTCCCCTTGCTCCTGCCTCTTTCCTGGCAGCTCCTAGCTGGGGCCTGGCAGAAGCAGCCCTGGCCCCTTCCAGCTGGCT
AGCTTCTTTTGTGTCCCCCCTAGCTGACATAGGAGCCTGGGGAAGGGGCTGCCACAAAGGTCTCCTTCCCCGAAGCTGC
TCAGCACAATGGTTGTAGCCGTGCTGAGGCCGGCGCTGGGGAGGGTCTGGCTGCAGCAGGGCTGCTCCTTTGCTTTGAT
GGGTTCCGGCTGCCTTGGCACTCAGCACCAGAGCAGGGATGCTCCTAGCCCACAGCCCCCGCCAAACTCTTCCCTCACC
TCCCCAGCTTCATACTCAGCACACGGGGTTTGAGCACTGGCCCTTCTCCCCCTGCCTGCAGTGATCCCTCAGCCAGGCA
GACTGCTGCCGTGGTTTCCTACCCACCCCCACATGGCCGCATGCCATGGAGCTAGGGGGGCTGTGGGGCTGTCCAGTGG
CAGCACCCCCGTGCCATGGAGCAGGACCGTGTGCCATGCCTGCCCCAGCCATAGGCTGGGAGTGCACACCGGCCTCTGG
CTAATGGGTTCCCATCAAGCTTGAAAACTGCTTCCTACCAAAGAGCGCGTGCCACCGCTGTCCCAGCACTGTAAATGCT
TCTCCCAACCCCCACTCTCCAGTTGGGCTGCGTCTGATGTAGCCACGGTGCTTTTAGTGCCTTGAATAAACACTTTTTT
GCGAGTGAAAAAAAAAAAAAAAAAAA
CitationKrause A, Zacharias W, Camarata T, Linkhart B, Law E, Lischke A, Miljan E, Simon HG. Tbx5 and Tbx4 transcription factors interact with a new chicken PDZ-LIM protein in limb and heart development. Dev Biol. 2004 Sep 1;273(1):106-20.
CopyrightReprinted from Developmental Biology, Volume 273, Issue 1, Ange Krause, William Zacharias, Troy Camarata, Barbara Linkhart, Evelyn Law, Antje Lischke, Erik Miljan, and Hans-Georg Simon, Tbx5 and Tbx4 transcription factors interact with a new chicken PDZ-LIM protein in limb and heart development, Pages 106-120, Copyright 2004, with permission from Elsevier. Copyright © 2004 Elsevier B.V. All rights reserved.
CommentsAuthors said: The chicken LMP-4 antisense probe spans the entire open reading frame of the gene. LMP-4: (FWD) 5′-CCTGGGCTGGTGACGAAAC, (REV) 5′-GGCCAATCCTGGTTCTGTCTT, (PROBE) 5′-AGCACAATGGCCAGGTCTCCGTAC. Genbank accession numbers for all sequences are as follows:... AY376690
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 15
stage 18
Eye
Heart
Limb Buds
 
19-24
stage 22
Atria
 
25-30
stage 25
stage 25
stage 29
stage 29
Atria
Heart
Limb Buds
Outflow Tract
 
31-32
stage 32
Limb Buds
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.48638

Mouse

Emage
Eurexpress
MGI GXD

Frog

Xenbase5860424

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-040426-2092
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