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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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FOXN4
forkhead box N4

Gene

Official Symbol	FOXN4
Official Full Name	forkhead box N4
BirdBase ID	BB-GG3775
CGNC ID
also known as	forkhead box protein N4
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001083359
Polypeptide	NP_001076828
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.15578

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	416898
Ensembl Gene
KEGG	gga:416898

Entry 1

GEISHA Id	FOXN4.Li.2005	Data Source	Publication
Complete cDNA Template Probe	show ACGCGGGGGGCCTAAGCGCGAGCGGCGCGCTCGGAGGTCGTGCCTTTGGCTCTGCTTTCCCATCGCTTGGGGTTTTCAG TTGGAATTTTGTTCGTCCCCTCCCCTTGCTGAAGTGCTGGATAGCTACTGCGTGCGTGCCTGTAAATGTCTTCTTCGGG TTTTTTTTTTTTTTCCCCTTCTATTTTTATTTTTATTTTTATTTTGCAAAGGAGATGATAGAGAGCGATCTCCCGTCCA TGATGTCAGGACTCATCCGGAGCTCAGGGCACAGCCAGCACGCTGCCCAGGAGTACAGGCTCTTAGCTTCTGACCCCTC CCAGCTGAGCGAAGATGACCTCCCCAGTGACTTGCAGTCCTTGTCATGGCTGACATCTGTTGATGTCCCTCGGTTACAA CAGATGGCCAGTGGAAGAATGGATTTTGGCCTTGGTGCCCAGAATGCAATGCTACAACAGACAGGTCCTGTGGCAAGCA ACATGCACTCCACGGGAGCACCTGGAGCAATGATTCATGTCCAGGCCAGCCTGCCACAGGGAGTCCTGGGACTGAATTC TATTTCATCACATGGAGCAAGTATGAACCAGTACTCTGTAGGTGGGCAGCCCTCTCCTAGTTTACAGACACAGCAGCAG CTCTTCCCTCCTCATCCACAGCAAGTGTTTGCCATAGCCCAGAATACACAACAGTGTAACCCAGCAGCAATCTACAACA CATCGTATGCCACTCAGCCACATTATCCTCAGCCACGCCTGGCTCCTCACTCTGCCCAAGAACTGCATCCAAAACATTA CCCCAAGCCCATCTATTCGTACAGTTGCTTAATTGCAATGGCACTGAAGAACAGCAAAACAGGCAGCCTCCCCGTGAGT GAGATCTACAGCTTCATGAAGGAACACTTTCCCTACTTCAAGACAGCCCCCGATGGCTGGAAAAACTCCGTGCGCCATA ACCTGTCCCTGAATAAGTGTTTTGAGAAAGTGGAGAACAAGATGAGTGGCACCTCTCGCAAGGGATGCCTGTGGGCTCT CAATCCTGCCAAGATTGACAAAATGGAAGAGGAGATGCAGAAGTGGAAGCGGAAGGACTTAGCTGCCATTCACAGGAGC ATGGCTAACCCAGAGGAGCTGGACAAGCTGATTACTGACAGACCTGAGAACTGCAGGCGCTCCAGTAAACAGGCAGAAC CTGAGATCTCTACCCTGAACCACATGGCAGCAGCCCAAGGCCGAATCTCCATCTCCCAGCTGCAGCCCCAACCGATCAT GACTCTCTCGCTGCAGTCTGTCCCTCTGCATCACCAGATCCAGACCCAGGCTCGCATCACGCCGGACTCCCCAGCACCT GCACAGACACCTCCTCTCCACACTCTGCCTGACATCAGCCACAGCCCTCTGCCCCACCACCCCATGGGCCGTGCCCCTC CTGACTTCCTGAACATGACCGCAGACATGAACACGGAGGTGGATGCTCTGGACCCAAGCATTATGGATTTTGCATTGCA AGGTAACATATGGGAGGAAATGAAAGATGACAGCTTCAGCCTTGACACCCTGGGTGCCTTCAGCAACTCTCCCCTGCAC CTCTCAGACTGTGACCTGGGCACTCCTGGCCTCACCCCCATTTCCAGTGGCAGCGATCACTCCTTGTCAGACTTTCAGG TCACAGGCCTTTATACCACTTACACCTCCGTGGACAACATAGCAGCAGCTCAGTACATGAACCCTCAAGGCAACAAGCC CATCGCTCTGCTCTAAATGTTGCACCGTTCTGTGGACCTTGAATTCAGGGGCTAGTTTCTCCCAACCCTTAAATCCAAC CCGAAAGCAATAAAACAGCTCCTCCTGCAGACACATGGAAAGTGTTGGCTGTTTACTGGGACACAGCACACAATGCCAA AATAACTCAAACCAGTACCAGTGGAGTCCTACTCTACCTTTCATCCGTGCCAGGACTGAGATTGGATGGTGGTGTTGCA GGGCTGGTGAGCTCTTAAGGACTTGAAGGCATCAGTAGGAACTTCTACTAGAATGGAGCTGAGCTAAAAATTAGTCCAG TTCAGGAGAACACGTTTTCTTGACATTATAATCTAGACTTACTTGTTGATGATGTTCTGTTGTCACACACACAGAGGCC AACGCAACTCAATGGTTGGATGAGCACCAAGTTCACGTCCAGAAGGGTTGATCTTGTACCGTGTTCATCTTGCTTCTCA CCTTGCCAAATGACTGTTGCCTTGCACAAAGTTCACACGCAGGTTCTGGAGGTGTTTGCACCTCTAATACTTTCCTGAC GTAACTGTTGCTAACTTATTGTTATGAGCTAGGGGGAAAGAAAAGGAGCAAAAAAGATTGCTAGTGAGAAATCCATAGC AGACAACTGCTGTATCCAGGGCTTAAAAACAAAGCCCTTACCCATGAAGGAAGCGGTACTACTGAATGACGCAGCTGAT CGCTGGCTAGAAGTTTGTAGGAATTATGCCTATTTTTAGGACTTGTTAAAAAGATTCG
Citation	Li S, Misra K, Matise MP, Xiang M. Foxn4 acts synergistically with Mash1 to specify subtype identity of V2 interneurons in the spinal cord. Proc Natl Acad Sci U S A. 2005 July 26; 102(30): 1068810693. Published online 2005 July 14.
Copyright	Copyright © 2005, The National Academy of Sciences
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_001083359.1 ).

Stage

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13-18

stage 18

Neural Plate/Tube

Entry 2

GEISHA Id	FoxN4.Boije.2008	Data Source	Publication
Complete cDNA Template Probe	show ACGCGGGGGGCCTAAGCGCGAGCGGCGCGCTCGGAGGTCGTGCCTTTGGCTCTGCTTTCCCATCGCTTGGGGTTTTCAG TTGGAATTTTGTTCGTCCCCTCCCCTTGCTGAAGTGCTGGATAGCTACTGCGTGCGTGCCTGTAAATGTCTTCTTCGGG TTTTTTTTTTTTTTCCCCTTCTATTTTTATTTTTATTTTTATTTTGCAAAGGAGATGATAGAGAGCGATCTCCCGTCCA TGATGTCAGGACTCATCCGGAGCTCAGGGCACAGCCAGCACGCTGCCCAGGAGTACAGGCTCTTAGCTTCTGACCCCTC CCAGCTGAGCGAAGATGACCTCCCCAGTGACTTGCAGTCCTTGTCATGGCTGACATCTGTTGATGTCCCTCGGTTACAA CAGATGGCCAGTGGAAGAATGGATTTTGGCCTTGGTGCCCAGAATGCAATGCTACAACAGACAGGTCCTGTGGCAAGCA ACATGCACTCCACGGGAGCACCTGGAGCAATGATTCATGTCCAGGCCAGCCTGCCACAGGGAGTCCTGGGACTGAATTC TATTTCATCACATGGAGCAAGTATGAACCAGTACTCTGTAGGTGGGCAGCCCTCTCCTAGTTTACAGACACAGCAGCAG CTCTTCCCTCCTCATCCACAGCAAGTGTTTGCCATAGCCCAGAATACACAACAGTGTAACCCAGCAGCAATCTACAACA CATCGTATGCCACTCAGCCACATTATCCTCAGCCACGCCTGGCTCCTCACTCTGCCCAAGAACTGCATCCAAAACATTA CCCCAAGCCCATCTATTCGTACAGTTGCTTAATTGCAATGGCACTGAAGAACAGCAAAACAGGCAGCCTCCCCGTGAGT GAGATCTACAGCTTCATGAAGGAACACTTTCCCTACTTCAAGACAGCCCCCGATGGCTGGAAAAACTCCGTGCGCCATA ACCTGTCCCTGAATAAGTGTTTTGAGAAAGTGGAGAACAAGATGAGTGGCACCTCTCGCAAGGGATGCCTGTGGGCTCT CAATCCTGCCAAGATTGACAAAATGGAAGAGGAGATGCAGAAGTGGAAGCGGAAGGACTTAGCTGCCATTCACAGGAGC ATGGCTAACCCAGAGGAGCTGGACAAGCTGATTACTGACAGACCTGAGAACTGCAGGCGCTCCAGTAAACAGGCAGAAC CTGAGATCTCTACCCTGAACCACATGGCAGCAGCCCAAGGCCGAATCTCCATCTCCCAGCTGCAGCCCCAACCGATCAT GACTCTCTCGCTGCAGTCTGTCCCTCTGCATCACCAGATCCAGACCCAGGCTCGCATCACGCCGGACTCCCCAGCACCT GCACAGACACCTCCTCTCCACACTCTGCCTGACATCAGCCACAGCCCTCTGCCCCACCACCCCATGGGCCGTGCCCCTC CTGACTTCCTGAACATGACCGCAGACATGAACACGGAGGTGGATGCTCTGGACCCAAGCATTATGGATTTTGCATTGCA AGGTAACATATGGGAGGAAATGAAAGATGACAGCTTCAGCCTTGACACCCTGGGTGCCTTCAGCAACTCTCCCCTGCAC CTCTCAGACTGTGACCTGGGCACTCCTGGCCTCACCCCCATTTCCAGTGGCAGCGATCACTCCTTGTCAGACTTTCAGG TCACAGGCCTTTATACCACTTACACCTCCGTGGACAACATAGCAGCAGCTCAGTACATGAACCCTCAAGGCAACAAGCC CATCGCTCTGCTCTAAATGTTGCACCGTTCTGTGGACCTTGAATTCAGGGGCTAGTTTCTCCCAACCCTTAAATCCAAC CCGAAAGCAATAAAACAGCTCCTCCTGCAGACACATGGAAAGTGTTGGCTGTTTACTGGGACACAGCACACAATGCCAA AATAACTCAAACCAGTACCAGTGGAGTCCTACTCTACCTTTCATCCGTGCCAGGACTGAGATTGGATGGTGGTGTTGCA GGGCTGGTGAGCTCTTAAGGACTTGAAGGCATCAGTAGGAACTTCTACTAGAATGGAGCTGAGCTAAAAATTAGTCCAG TTCAGGAGAACACGTTTTCTTGACATTATAATCTAGACTTACTTGTTGATGATGTTCTGTTGTCACACACACAGAGGCC AACGCAACTCAATGGTTGGATGAGCACCAAGTTCACGTCCAGAAGGGTTGATCTTGTACCGTGTTCATCTTGCTTCTCA CCTTGCCAAATGACTGTTGCCTTGCACAAAGTTCACACGCAGGTTCTGGAGGTGTTTGCACCTCTAATACTTTCCTGAC GTAACTGTTGCTAACTTATTGTTATGAGCTAGGGGGAAAGAAAAGGAGCAAAAAAGATTGCTAGTGAGAAATCCATAGC AGACAACTGCTGTATCCAGGGCTTAAAAACAAAGCCCTTACCCATGAAGGAAGCGGTACTACTGAATGACGCAGCTGAT CGCTGGCTAGAAGTTTGTAGGAATTATGCCTATTTTTAGGACTTGTTAAAAAGATTCG
Citation	Boije H, Edqvist PH, Hallböök F. Temporal and spatial expression of transcription factors FoxN4, Ptf1a, Prox1, Isl1 and Lim1 mRNA in the developing chick retina. Gene Expr Patterns. 2008 Jan;8(2):117-23. Epub 2007 Oct 1. DIO: 10.1016/j.modgep.2007.09.004.
Copyright	Copyright © 2007 Elsevier B.V.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001083359).