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FOXN4 forkhead box N4 Gene Summary Expression Other Species Expression JBrowse Gene Official Symbol FOXN4 Official Full Name forkhead box N4 CGNC ID also known as forkhead box protein N4 gene type protein-coding
Genomic Map Sequence Information Gene Expression Orthology Entrez Gene Ensembl Gene Genetic Phenotypes MOD Fruit Fly Human Mouse Xenopus Zebrafish
Gene Ontology Molecular Function Biological Process Cellular Component
Links to other databases
Entry 1 GEISHA Id FOXN4.Li.2005 Data Source Publication Complete cDNA Template Probe show ACGCGGGGGGCCTAAGCGCGAGCGGCGCGCTCGGAGGTCGTGCCTTTGGCTCTGCTTTCCCATCGCTTGGGGTTTTCAG TTGGAATTTTGTTCGTCCCCTCCCCTTGCTGAAGTGCTGGATAGCTACTGCGTGCGTGCCTGTAAATGTCTTCTTCGGG TTTTTTTTTTTTTTCCCCTTCTATTTTTATTTTTATTTTTATTTTGCAAAGGAGATGATAGAGAGCGATCTCCCGTCCA TGATGTCAGGACTCATCCGGAGCTCAGGGCACAGCCAGCACGCTGCCCAGGAGTACAGGCTCTTAGCTTCTGACCCCTC CCAGCTGAGCGAAGATGACCTCCCCAGTGACTTGCAGTCCTTGTCATGGCTGACATCTGTTGATGTCCCTCGGTTACAA CAGATGGCCAGTGGAAGAATGGATTTTGGCCTTGGTGCCCAGAATGCAATGCTACAACAGACAGGTCCTGTGGCAAGCA ACATGCACTCCACGGGAGCACCTGGAGCAATGATTCATGTCCAGGCCAGCCTGCCACAGGGAGTCCTGGGACTGAATTC TATTTCATCACATGGAGCAAGTATGAACCAGTACTCTGTAGGTGGGCAGCCCTCTCCTAGTTTACAGACACAGCAGCAG CTCTTCCCTCCTCATCCACAGCAAGTGTTTGCCATAGCCCAGAATACACAACAGTGTAACCCAGCAGCAATCTACAACA CATCGTATGCCACTCAGCCACATTATCCTCAGCCACGCCTGGCTCCTCACTCTGCCCAAGAACTGCATCCAAAACATTA CCCCAAGCCCATCTATTCGTACAGTTGCTTAATTGCAATGGCACTGAAGAACAGCAAAACAGGCAGCCTCCCCGTGAGT GAGATCTACAGCTTCATGAAGGAACACTTTCCCTACTTCAAGACAGCCCCCGATGGCTGGAAAAACTCCGTGCGCCATA ACCTGTCCCTGAATAAGTGTTTTGAGAAAGTGGAGAACAAGATGAGTGGCACCTCTCGCAAGGGATGCCTGTGGGCTCT CAATCCTGCCAAGATTGACAAAATGGAAGAGGAGATGCAGAAGTGGAAGCGGAAGGACTTAGCTGCCATTCACAGGAGC ATGGCTAACCCAGAGGAGCTGGACAAGCTGATTACTGACAGACCTGAGAACTGCAGGCGCTCCAGTAAACAGGCAGAAC CTGAGATCTCTACCCTGAACCACATGGCAGCAGCCCAAGGCCGAATCTCCATCTCCCAGCTGCAGCCCCAACCGATCAT GACTCTCTCGCTGCAGTCTGTCCCTCTGCATCACCAGATCCAGACCCAGGCTCGCATCACGCCGGACTCCCCAGCACCT GCACAGACACCTCCTCTCCACACTCTGCCTGACATCAGCCACAGCCCTCTGCCCCACCACCCCATGGGCCGTGCCCCTC CTGACTTCCTGAACATGACCGCAGACATGAACACGGAGGTGGATGCTCTGGACCCAAGCATTATGGATTTTGCATTGCA AGGTAACATATGGGAGGAAATGAAAGATGACAGCTTCAGCCTTGACACCCTGGGTGCCTTCAGCAACTCTCCCCTGCAC CTCTCAGACTGTGACCTGGGCACTCCTGGCCTCACCCCCATTTCCAGTGGCAGCGATCACTCCTTGTCAGACTTTCAGG TCACAGGCCTTTATACCACTTACACCTCCGTGGACAACATAGCAGCAGCTCAGTACATGAACCCTCAAGGCAACAAGCC CATCGCTCTGCTCTAAATGTTGCACCGTTCTGTGGACCTTGAATTCAGGGGCTAGTTTCTCCCAACCCTTAAATCCAAC CCGAAAGCAATAAAACAGCTCCTCCTGCAGACACATGGAAAGTGTTGGCTGTTTACTGGGACACAGCACACAATGCCAA AATAACTCAAACCAGTACCAGTGGAGTCCTACTCTACCTTTCATCCGTGCCAGGACTGAGATTGGATGGTGGTGTTGCA GGGCTGGTGAGCTCTTAAGGACTTGAAGGCATCAGTAGGAACTTCTACTAGAATGGAGCTGAGCTAAAAATTAGTCCAG TTCAGGAGAACACGTTTTCTTGACATTATAATCTAGACTTACTTGTTGATGATGTTCTGTTGTCACACACACAGAGGCC AACGCAACTCAATGGTTGGATGAGCACCAAGTTCACGTCCAGAAGGGTTGATCTTGTACCGTGTTCATCTTGCTTCTCA CCTTGCCAAATGACTGTTGCCTTGCACAAAGTTCACACGCAGGTTCTGGAGGTGTTTGCACCTCTAATACTTTCCTGAC GTAACTGTTGCTAACTTATTGTTATGAGCTAGGGGGAAAGAAAAGGAGCAAAAAAGATTGCTAGTGAGAAATCCATAGC AGACAACTGCTGTATCCAGGGCTTAAAAACAAAGCCCTTACCCATGAAGGAAGCGGTACTACTGAATGACGCAGCTGAT CGCTGGCTAGAAGTTTGTAGGAATTATGCCTATTTTTAGGACTTGTTAAAAAGATTCG
Citation Li S, Misra K, Matise MP, Xiang M. Foxn4 acts synergistically with Mash1 to specify subtype identity of V2 interneurons in the spinal cord. Proc Natl Acad Sci U S A. 2005 July 26; 102(30): 1068810693. Published online 2005 July 14. Copyright Copyright © 2005, The National Academy of Sciences Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_001083359.1 ).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 13-18
stage 18
stage 18
Neural Plate/Tube
Entry 2 GEISHA Id FoxN4.Boije.2008 Data Source Publication Complete cDNA Template Probe show ACGCGGGGGGCCTAAGCGCGAGCGGCGCGCTCGGAGGTCGTGCCTTTGGCTCTGCTTTCCCATCGCTTGGGGTTTTCAG TTGGAATTTTGTTCGTCCCCTCCCCTTGCTGAAGTGCTGGATAGCTACTGCGTGCGTGCCTGTAAATGTCTTCTTCGGG TTTTTTTTTTTTTTCCCCTTCTATTTTTATTTTTATTTTTATTTTGCAAAGGAGATGATAGAGAGCGATCTCCCGTCCA TGATGTCAGGACTCATCCGGAGCTCAGGGCACAGCCAGCACGCTGCCCAGGAGTACAGGCTCTTAGCTTCTGACCCCTC CCAGCTGAGCGAAGATGACCTCCCCAGTGACTTGCAGTCCTTGTCATGGCTGACATCTGTTGATGTCCCTCGGTTACAA CAGATGGCCAGTGGAAGAATGGATTTTGGCCTTGGTGCCCAGAATGCAATGCTACAACAGACAGGTCCTGTGGCAAGCA ACATGCACTCCACGGGAGCACCTGGAGCAATGATTCATGTCCAGGCCAGCCTGCCACAGGGAGTCCTGGGACTGAATTC TATTTCATCACATGGAGCAAGTATGAACCAGTACTCTGTAGGTGGGCAGCCCTCTCCTAGTTTACAGACACAGCAGCAG CTCTTCCCTCCTCATCCACAGCAAGTGTTTGCCATAGCCCAGAATACACAACAGTGTAACCCAGCAGCAATCTACAACA CATCGTATGCCACTCAGCCACATTATCCTCAGCCACGCCTGGCTCCTCACTCTGCCCAAGAACTGCATCCAAAACATTA CCCCAAGCCCATCTATTCGTACAGTTGCTTAATTGCAATGGCACTGAAGAACAGCAAAACAGGCAGCCTCCCCGTGAGT GAGATCTACAGCTTCATGAAGGAACACTTTCCCTACTTCAAGACAGCCCCCGATGGCTGGAAAAACTCCGTGCGCCATA ACCTGTCCCTGAATAAGTGTTTTGAGAAAGTGGAGAACAAGATGAGTGGCACCTCTCGCAAGGGATGCCTGTGGGCTCT CAATCCTGCCAAGATTGACAAAATGGAAGAGGAGATGCAGAAGTGGAAGCGGAAGGACTTAGCTGCCATTCACAGGAGC ATGGCTAACCCAGAGGAGCTGGACAAGCTGATTACTGACAGACCTGAGAACTGCAGGCGCTCCAGTAAACAGGCAGAAC CTGAGATCTCTACCCTGAACCACATGGCAGCAGCCCAAGGCCGAATCTCCATCTCCCAGCTGCAGCCCCAACCGATCAT GACTCTCTCGCTGCAGTCTGTCCCTCTGCATCACCAGATCCAGACCCAGGCTCGCATCACGCCGGACTCCCCAGCACCT GCACAGACACCTCCTCTCCACACTCTGCCTGACATCAGCCACAGCCCTCTGCCCCACCACCCCATGGGCCGTGCCCCTC CTGACTTCCTGAACATGACCGCAGACATGAACACGGAGGTGGATGCTCTGGACCCAAGCATTATGGATTTTGCATTGCA AGGTAACATATGGGAGGAAATGAAAGATGACAGCTTCAGCCTTGACACCCTGGGTGCCTTCAGCAACTCTCCCCTGCAC CTCTCAGACTGTGACCTGGGCACTCCTGGCCTCACCCCCATTTCCAGTGGCAGCGATCACTCCTTGTCAGACTTTCAGG TCACAGGCCTTTATACCACTTACACCTCCGTGGACAACATAGCAGCAGCTCAGTACATGAACCCTCAAGGCAACAAGCC CATCGCTCTGCTCTAAATGTTGCACCGTTCTGTGGACCTTGAATTCAGGGGCTAGTTTCTCCCAACCCTTAAATCCAAC CCGAAAGCAATAAAACAGCTCCTCCTGCAGACACATGGAAAGTGTTGGCTGTTTACTGGGACACAGCACACAATGCCAA AATAACTCAAACCAGTACCAGTGGAGTCCTACTCTACCTTTCATCCGTGCCAGGACTGAGATTGGATGGTGGTGTTGCA GGGCTGGTGAGCTCTTAAGGACTTGAAGGCATCAGTAGGAACTTCTACTAGAATGGAGCTGAGCTAAAAATTAGTCCAG TTCAGGAGAACACGTTTTCTTGACATTATAATCTAGACTTACTTGTTGATGATGTTCTGTTGTCACACACACAGAGGCC AACGCAACTCAATGGTTGGATGAGCACCAAGTTCACGTCCAGAAGGGTTGATCTTGTACCGTGTTCATCTTGCTTCTCA CCTTGCCAAATGACTGTTGCCTTGCACAAAGTTCACACGCAGGTTCTGGAGGTGTTTGCACCTCTAATACTTTCCTGAC GTAACTGTTGCTAACTTATTGTTATGAGCTAGGGGGAAAGAAAAGGAGCAAAAAAGATTGCTAGTGAGAAATCCATAGC AGACAACTGCTGTATCCAGGGCTTAAAAACAAAGCCCTTACCCATGAAGGAAGCGGTACTACTGAATGACGCAGCTGAT CGCTGGCTAGAAGTTTGTAGGAATTATGCCTATTTTTAGGACTTGTTAAAAAGATTCG
Citation Boije H, Edqvist PH, Hallböök F. Temporal and spatial expression of transcription factors FoxN4, Ptf1a, Prox1, Isl1 and Lim1 mRNA in the developing chick retina. Gene Expr Patterns. 2008 Jan;8(2):117-23. Epub 2007 Oct 1. DIO: 10.1016/j.modgep.2007.09.004. Copyright Copyright © 2007 Elsevier B.V. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001083359).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 7-12 stage 12
Eye 13-18 stage 14
stage 16
stage 18
stage 18
Eye Retina 19-24 stage 20
stage 22
stage 22
stage 22
stage 22
stage 22
stage 24
Diencephalon Eye Mesencephalon Retina Rhombomeres Telencephalon 25-30 stage 26
stage 29
stage 29
Eye Retina 31-44 stage 32
stage 35
stage 35
stage 35
stage 35
stage 38
stage 38
stage 38
stage 38
stage 41
stage 41
stage 44
stage 44
Retina all
Mouse Frog Fruit Fly Zebra Finch Zebrafish