Geisha

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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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TFEC
transcription factor EC

Gene

Official Symbol	TFEC
Official Full Name	transcription factor EC
CGNC ID	7156
also known as	transcription factor EC\|TFE-C, transcription factor EC
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001006229
Polypeptide	NP_001006229
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.9500

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	22797	ENSG00000105967		MIM:604732
Mouse	21426	ENSMUSG00000029553	All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2)	MGI:1333760
Xenopus	100487610			986000
Zebrafish	556894		ZDB-GENE-041210-21	ZFIN:ZDB-GENE-041210-21

Gene Ontology

Molecular Function	DNA binding, protein dimerization activity
Biological Process	regulation of transcription, DNA-templated, transcription, DNA-templated
Cellular Component	nucleus

Links to other databases

Entrez Gene	417773
Ensembl Gene	ENSGALG00000009411
KEGG	gga:417773

Entry 1

GEISHA Id	ChEST709p5	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show CACCTGAATATGACACATTTGATGACAGTGACAGCTTAGCAACGTGCTTTTGTTGTCTGATTTTGGTGTTGCAATAAGG GGTTAGGAAAGAAGAGAGAGTTGGTGGCTGTGAGGAAAGAAGTTATGCTAAACCACAAAACTCTAAGAGAATTTTAATA AGTGAATAATTTGTAGAGCACTTGAATTATTTGAATTTTAAGATATAAACTTCTGGAATTCTTAACTGAAGTAACAAAT ACAATTATATCCATATATTTTCAGAATAATATTTTCTGCAATAATAATAATTATTGGCCTTAAAATATTATTTTACTAG ATGGAAGAGGTTATTGAAGACATAATCAATATGGAATCAAGCTTTAATGATGAAGGGATAGGTTGCTCTGAAACGCCTC TTCTGATGCAACGAACTGTAAGTATTTTGTGGAATTTAGTCTTCATATTTATAATACAGAAATTCACTGAGCTATTCAA TTGCACATTACACCTCAGTGGACAAAGCAGTGTTATCAATGGATTATTCTCCTTTCTCCTTAGCTACCTGTCTTTTTGT CAAGAAATATTATAGGAAAAGATTTCAGTGTGGTGGAGGCAGAGGTGTTCTAAGAGTTCTGGTTAGCTACTGGAATATG TTGAGAACTTGTGGTTCTAGCCCAGCATCAGCTCTGGTGTACAGCTGTAGTTCACATGCTACACTATGAATACGCAGAT TCTCTGTACTCTCAAAGGCCTTANGAAGCTTTGCTTAAAGGCTCTTCTACCTTGTCTTTAAAATAATAAATAAATAAAA GCTTGGCCATGTACTGGTAAAAAAAG
Comments	no specific expression detected stages 10, 12, 14, 19, 22.

no images

Entry 2

GEISHA Id	TFEC.53Z.E7	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show CACCTGAATATGACACATTTGATGACAGTGACAGCTTAGCAACGTGCTTTTGTTGTCTGATTTTGGTGTTGCAATAAGG GGTTAGGAAAGAAGAGAGAGTTGGTGGCTGTGAGGAAAGAAGTTATGCTAAACCACAAAACTCTAAGAGAATTTTAATA AGTGAATAATTTGTAGAGCACTTGAATTATTTGAATTTTAAGATATAAACTTCTGGAATTCTTAACTGAAGTAACAAAT ACAATTATATCCATATATTTTCAGAATAATATTTTCTGCAATAATAATAATTATTGGCCTTAAAATATTATTTTACTAG ATGGAAGAGGTTATTGAAGACATAATCAATATGGAATCAAGCTTTAATGATGAAGGGATAGGTTGCTCTGAAACGCCTC TTCTGATGCAACGAACTGTAAGTATTTTGTGGAATTTAGTCTTCATATTTATAATACAGAAATTCACTGAGCTATTCAA TTGCACATTACACCTCAGTGGACAAAGCAGTGTTATCAATGGATTATTCTCCTTTCTCCTTAGCTACCTGTCTTTTTGT CAAGAAATATTATAGGAAAAGATTTCAGTGTGGTGGAGGCAGAGGTGTTCTAAGAGTTCTGGTTAGCTACTGGAATATG TTGAGAACTTGTGGTTCTAGCCCAGCATCAGCTCTGGTGTACAGCTGTAGTTCACATGCTACACTATGAATACGCAGAT TCTCTGTACTCTCAAAGGCCTTAGGAAGCTTTGCTTAAAGGCTCTTCTACCTTGTCTTAAAAATAAATAAATAAATAAA AGCTTGGCCATGTACTGGTAAAAAAAGAAAT
Comments	No specific expression detected at stages 5, 9, 10 12, 14, 16, 19, 21.

no images

Entry 3

GEISHA Id	TFEC.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	GCCTCACTGACATTCTCCCGCC
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGGCTTCTCCTGCTGCTCTCTTTCG	cDNA Template Length	1141
Forward cDNA Template Probe	show TAGTTGGCAGTGAGCACCACTATCAGGGCCTGTCTCTATGAGATCATTGGTGCACCCCCTACAAGATGTCCTCGAGGCA TTGCTCTTCTTTTAAGCTGCACTGAAGGACAAATCGGTGAAGTGGGAAAGTGGATCAGAAAAGGCTGTAGATCCATCGC AAACATCAGAATTTGGTCCATGAGCCAGAGGCATTTGTTGAGAGTAGTCTACAGAGTTCTCCTCTGGATATGACTGTTG CTTGATGACCTGAGCAGCTAAATCTACTGCACTGAGTGAAGACATGACTGGAAGGCCATGAGCACGTGCCTGGATCTCT AGTTCCTGAATTCGAAGTAGAAGTCTTCTGTTAGCGTGCTCTAATTTCTTCTGTCTGTGTTCTAATTCTCTGGCTCTCT GTTGTTCTTTTTGTAGCCACTTGATGTACTCCACTGATGCTTTTAAAATAGTTCCTTTGTTCCAGCGCATATCAGGATC ATTAGACTTGGGGATGAGCGTGCCAAGCTCCTTGATTCGGTAATTAATGTTATACCTTCTTCTTCTCTCAATGAGATTG TGGTTATCCTTTTTTTGTCTCTCCTTGGCCATTGCTCGCGTATCTGCTTCTGTGAGTTCCCTTTTTACTGGTAGATTAG CTGGACAAGAAGCATTTGTGAGACTCATATTAGCTGGTGCCATTCCCTGGTCACTGTTATATATATCCAAAATGCTGCT AGATAGAGTTCGTTGCATCAGAAGAGGCGTTTCAGAGCAACCTATCCCTTCATCATTAAAGCTTGATTCCATATTGATT ATGTCTTCAATACCCTCTTCCATCGCATTTTCATGTTCCCCTCCCAAGGGCAACAGCTTGATCACGGGACTCTTGGTGT GCCAATATCCCGACCGGAGGCCTGTGTCCATCCTAAAAAAACCGCTCTTCCGGGGCGGGGTCGGGCGGAATGCAAAAGG AATAGTTCTCCCCACCTCCGTAGCAAAGTTAATTCTCTCCGCGGGGCATGTTTTATAGAAAAAAAACAAATGTTTCGGT GGGCCCCCCCCCCCCACACCCACAAGAAAACAGGGGCCGGAAAAAATACAAAAAAAA
Comments	No expression detected at or before stage 14.

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

Unlabeled

7-12

stage 12

Unlabeled

Stages 11-12.

13-18

stage 14

stage 18

Pineal Gland
Retina
Unlabeled

19-24

stage 21

stage 22

Pineal Gland
Retina

25-26

stage 25

stage 26

Eye
Pineal Gland

Entry 4

GEISHA Id	TFEC.Trimarchi.2009	Data Source	Publication
Complete cDNA Template Probe	show GCAGGATCTGTAAACACTGGGTAGCTTCTCCTCTCTGCCTCACTGACATTCTCCCGCCCAGCCACCTCTATCACCCATG GTATGGGTAAGGAGATGGGGTACAACACACTTGGAAAATCAGTCTAGATATCATATCCAGCAAAGCCAGCGGTACCAGG TGAAGCAGTACTTGACCCTTGACACCAAGCTGTCCAGCCAGACTCTCTCCCTGTCCCACTCCCACACAGTCCAGCCCAC AGGAGTGACCTCTATTTTTAGGAACGGACACATGCCTCCAGTCAGTGATATTGGCACACCAGAGAGTCCCGTGACCAAG CTGCTGGCCCTTGGAGGAGAACATGAAAATGCGATGGAAGAGGTTATTGAAGACATAATCAATATGGAATCAAGCTTTA ATGATGAAGGGATAGGTTGCTCTGAAACGCCTCTTCTGATGCAACGAACTAGCATTTTGGATATATATAACAGTGACCA GGGAATGGCACCAGCTAATATGAGTCTCACAAATGCTTCTTGTCCAGCTAATCTACCAGTAAAAAGGGAACTCACAGCA GATACGCGAGCAATGGCCAAGGAGAGACAAAAAAAGGATAACCACAATCTCATTGAGAGAAGAAGAAGGTATAACATTA ATTACCGAATCAAGGAGCTTGGCACGCTCATCCCCAAGTCTAATGATCCTGATATGCGCTGGAACAAAGGAACTATTTT AAAAGCATCAGTGGAGTACATCAAGTGGCTACAAAAAGAACAACAGAGAGCCAGAGAATTAGAACACAGACAGAAGAAA TTAGAGCACGCTAACAGAAGACTTCTACTTCGAATTCAGGAACTAGAGATCCAGGCACGTGCTCATGGCCTTCCAGTCA TGTCTTCACTCAGTGCAGTAGATTTAGCTGCTCAGGTCATCAAGCAACAGTCATATCCAGAGGAGAACTCTGTAGACTA CTCTCAACAAATGCCTCTGGCTCATGGACCAAATTCTGATGTTTGCGATGGATCTACAGCCTTTTCTGATCCACTTTCC CATTTCACCGATTTGTCCTTCAGTGCAGCTTTAAAAGAAGAGCAACAACTAGAGGAAATCTTGTTGGATGACACAGTAT CACCATTTGGAGCAGACCCGCTCTTGTCCTCCACATCCCCAGCTGCGTCGAAAGAGAGCAGCAGGAGAAGCAGCTTTAG CACAGATGATGGTGATGATTTATAAAAGCATAAAAGGGCCTCACACTTCCTTAAACCACTTGCTAACAGACTGGAGTTG AACATAAAGCATGGTGTCTGTGCTTGTTCCAAATACGAATATGGAGAACCACTGTGAAGATTACAGGCAATGTTTACAT CAGCATTACTTTAGAGGAAAAGGAGATATACCTGGGATTCAGATCACTTGCCCCAGATTCCATCATCTGTTCACAGTGA CATTGCCCAATCTTTCTCCCGGGAAA
Citation	Trimarchi JM, Cho SH, Cepko CL. Identification of genes expressed preferentially in the developing peripheral margin of the optic cup. Dev Dyn. 2009 Sep;238(9):2327-9.
Copyright	Dev. Dyn Copyright © 2009 John Wiley & Sons, Inc. All Rights Reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_001006229.1).