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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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PLXNC1
plexin C1

Gene

Official Symbol	PLXNC1
Official Full Name	plexin C1
BirdBase ID	BB-GG16002
CGNC ID	8596
also known as	plexin-C1
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_416143
Polypeptide	XP_416143
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.55785

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	417901
Ensembl Gene
KEGG	gga:417901

GEISHA Id	PLEXINC1.Mauti.2006	Data Source	Publication
Complete cDNA Template Probe	show ATGTGGATCACTGGGAGCTTTGTATTTGCACTTAAAGAGCAACTGGAAGTCAAGGTGGAAGCCAAGGAGCTGCAGGCAG TGCTTGTTAGTGGTGCATCTTTGCATCTGCCCTCGGGCGTGCGGAGCAAGCTGCTGCTGCTCACCCACGCCGAGGCCGG AGTCGACGGACAGCTGCTGGCCGGCTGGACGCAGGGGCAGGGCAGCTGCGAGGTGTGGCGGCTGCCGGACTACCGCCTG GTCCTCAACCGCACGGAGGTGGTCAGCTGCCTGCCCCGCGGCTCCACGGCCGGAGTGGTCTTCCGGCAGGCGGACGACT GGTACCTGGCGGTGGCGGCCACCTACTCCAACGGCGAGCGATGGCCCCCCGCGGGCTGCGAGCCGTCGGAGTCGAGCCA GACGGCGGCGATTACCGTGCGCCCCGTAAAGACCCTGGAGCCTCGCGGAGAGTGGGACATCATCAAGTACAACAAGGAG CCTTTGCATTTCGTGGACGCGCTGTGGTGGGGTGGCCGCCTCTTCTTTCCCTACTACCGGCTGAAGGCCGAGCTGGACA GGGACCCGGAGCTGCCGAGCATGGTGGTCATGCATCAGCCGCATCGCTCCGAGCACAGCTTTGACCTCCAAGGCCAAGT GTATCTGGACTGTGGTTGCAGGAGCCTCCTCATCTCCTCCAGCCTCGTCCGCCAAGGAGAGCGGGGCTGGTGGGTGGGC GTCTTCCGCCACAACCACGGTGACAGGGCCTGGGACTCCACCGCCGTCTGCGTCTTCGGGATGGAGGAGCTGCGGGAGC CAACCTGTGTGTACAGCACACACTTCTACGCGGGGACCAACTGCAAGGTACAATCAATCAAGAAATCACCCACCTTGAT TCACTCTGGATTAGTGGCTGTTTATGGCACAGTTGTTTTAAATCAGATCGTTCTCTTTCTGGGAACAGATGATGGACAG TTACTGAAGGCTATTCTTAATGAGGATATGAAATCTAACTGCCCAGAGATTTTGTATGAAATTGAGGAAGAAACCTCTA TTTTTCCCAAACTTCGACTTGATCCAGTAGATAGTAACTACATCTATCTGTCCTCTGCCAACAAGGTGAGAAGAATACC AGTTGCAAATTGTGGTAGATATGTTTCCGAGCAAGAATGCTTATCTGCAAAGGATCCCTACTGTGGGTGGTGTTCTTTG AATCAAAGGTGCACATTAAAAGAGAATTGTACACGTTCAAACAGCACAAAGGGTTGGTTTAACATTTCACATGCACCTG ATAAAGATCTGAAAATCCTGCTAAGGTTCCCTGCCAGAAATCAGATTTCTGTGTCTGCAAGTATAAGCAAAACCCTTAC TTCCTGTAGAATAAAAATTGTAAAACCTATTGAAATGCCTCATGAAAATGTAGTGCTGAAAAACTCATCCTGTGTCTGC AATCTCACTACTCCGGTGACACTGGATAATGCTTGGGCCCCTTGCTACAAGAAGGGTATTGAGTTGTTGGAGTATGTGC GGAGAAAAGCAGTGCAGCTGCTGAAGGGACTGGGAAAACAGACTTATGAGGAGTGTCTGAGGGAAATGGGGCTGTTTAG TCTGGAGGAGTTGAGGCAACACCTCCTCACTGTCTACAACCACCTGAAAGGAGGTTGCAATGAGGATGTTGATCTCTTT TCTCAGCATATCAACATTCATTCCATCAAGCCTTTGTGGATTTCTACGTTGGGCAAAAGTGAAATAACAGTCAAAGGAG AAAACTTTACACATGAATCGGGCATAAAACTGATACTGACAGGAAGCAGTGTCTGTAAACAAGAAATCATTAAAGTTAG AAATGTGATAAATGATACACAGATGACATTTGCTCTCCCACCAACACGTAAAGAGGCCAAAAGTGTATGCATACAGGCT GATGGGAGAAAATGTTCACCACCAGTCACCCTGCATTATGTTTCACTGCCAGCATGTTTTGGAATCACACCAAATACCT CCTGGATCAGTGGTGGTCGCAAAATAATTACAACTGGTAGAAATTTGAATGTGGTGGACAAAGTGATTATTTCAGATGA CCAGAGATCAAACCTCACCATCTCTGAGTGTCCTCAAAACAAATCTGAGTATCATTACTTATCGCCAAGTCTGAGCCAT GCAACGGAGGGTAAAGTTGTTGATATGATATTTAAAGTGGAAACTACCTTTATACCATGTGTCAAATTGCACTATCACC CTGACCCAGTGTTCATTAACTATCAGCTGCACACTGAGCTGGATCCTGATCTGGAATTAAAAATATATAAAGAAAATGA CAACTTGAATATTTCTAAAACTGAGGTAGAAGTTTATCTGTCATATATGAATGGTTCACAGACTGCAAAGATATACTTC AGTGTCCAAAATATTACTGAAAAGCCAGACCGTAGCACCATACTGTGCAAATTCAAAAGGGAAGGAACAGAAAAGATTG ACTTTTCCACAGTGAAAGTTTTTGTCAAATTAGGAAATTTTGAGCTTGAAGTCAAACCAACGTCATCATACATATATTT ATATGTCCTCATTTTGCTACCTATTGTAGTGGGTGTCATAATAGTGGCATTCATAGTTACTAGATACAAGTCCAAGGAG TTAACTCGTAAACAGAGTCAGCAACTTGAATTGTTGGAGTATGAAATTCGGAAAGAAATACGCGAGGGATTTGCTGAAC TGCAGATGGATGAATTAGATGTGGTGGATAGTTTTGGAACTGTTCCTTTCCTTGACTACAAACACTTTGCTATTAGAAC TTTCTTTCCGGAGTCAGGAGGTTTTGCATCCATCTTCAGTGAAGACATGCCACAGAGCAGAGACCAAACACGCAAGGAT GAAAGCTTCAACATGTTGCATGCTCTGATTTGTAACAAGAACTTTCTTGTTACTCTCATTCACACTCTTGAAAAGCAGA AAAATTTCTCTGTGAAAGACAGGTGCTTGTTTGCATCCTTCTTGACTATTGCACTACAAACTAAGCTAGTTTATCTAAC CCATATTTTGGAAGTGTTGACGAAGGACTTGATGGAACAGTCAAGCAATGTGCAGCCTAAACTCCTGCTCAGACGAACT GAATCTGTGGTAGAAAAATTGCTGACAAACTGGATGTCTGTCTGCCTTTCTGGGTTTCTCCGGGAGACAATTGGTGAAC CTTTCTATTTGCTAGTGACAACCCTCAATCAGAAGATAAACAAAGGACCTGTTGATGCAATAACTTGCAAAGCCCTGTA CACGCTTAACGAAGACTGGCTGCTGTGGCAAGTGTCTGAATTCAAAACAGTGACTGTGAATGTAATCTTTGAAAAAATC CCAGAAAATGAGAGTGGAGATGCCTGTCAAACTATTCAAGTTAACGTGCTGGACTGTGACACCATAGGCCAAACCAAGG AGAAGAGCCTTCAAGCTTTCCTTAATAAGAATGGCTTTCCCTATGGTCTTCAGCTGGATGAAATTGGCCTTGAACTTGT GTCTGAGGAGCAGCAAAGAGAACTGTTAGATATTGACGGTTCCTCTGAGATGATGGAGGATGGGATAAGGAAGCTAAAT ACCATTGCTCATTACAAGATTGCAAATGGAGCAACCATAAAAGTCTTGAAAAAGAAGACAAATACCCGATCAGATGTGG ACTACTCTGACGAGCACTGTCATTTGATTTTACCTGACTCTGAAGCAAATAAAGACATGAAAGGATCGGGTCACAAAGG AAAGCAAAAATTCAAAGTGAAAGAAATGTATCTGACAAAGCTACTGTCAACCAAGGTTGCAATTCATTCCGTTGTCGAA AATCTCTTCCGGAGTATTTGGAGTCTACCTAACAATAAAGCTCCTGTTGCCATCAAGTATTTTTTTGACTTTCTGGATG CCCAGGCCGAGAGCAAAAGAATCACTGACCCCGATGTGGTTCACATATGGAAAACCAACAGTCTTCCTCTGCGCTTCTG GGTGAACATACTGAAGAATCCCCAGTTTGTCTTTGATGTTAAGAAGACGTCACATATAGATGGCTGTTTGTCTGTCATC GCACAAGCTTTCATGGATGCCTTTTCTCTAGCAGAACAGACAATGGGGAAGGAAGCACCAACAAACAAGCTTCTCTACG CTAAGGACATTCCGCTCTACAAGAAGGAGGTGAAGGCGTACTACAAAGCCATCAGGGATCTGCCTCCCTTGACCACTTC AGAGGTTGAAGAATTTCTAACTCAGGAATCTAAGAAACATGAAAATGAATTTAATGAGGAAGTGGCCTTGATGGAAATC TACAGATACATTGTGAAGTATTACGATGAGATTGTCAGCAAACTCGAGCGAGAACGGGGGTTTGAAGAAGTCCAGAAAC AGCTCCAGCAAGTAAAAGCCTTATTCGATGAAAAGAAGAAATGCAAATGGGTTTGAGCAGAGCGCTGCCTCACAGTGTC ACTGCGGGGAACTTGAAATAAGCGCTGCTGCTCCCCAGGCAGTTCTGAATGACTCTGTACAGGGCTCGAGACAATTGGA CGCTGCTTCACTCTGACCATTCCATACCCGAGTTTGGGAACGAAGGGTGCGCAGGGCTGCATATTGGACACGCCAATGT GACGGTGCGGCTGAGGCTGGCGCTGGCGGCCCAAGGGTTTTAGGTACTTGAACCCAGGTACCGTTTTGGTTCAAAGCTG CTGCCTCAGTAAGCTCCCCACAGACTGAAAAGCAGCTTGCAGGAGCTGCACGCTGCAAGCTCGGAGTTGCCCATGTGAA CCTTTAGGCTGCTTTGCTCTGTTTTGAAGAGAGAAAGCTGATGTTTCGCCACACCCTTCCCACAGCCACGGCAGTCTGT GCAGACCAGACAGGCTGTGGGGTCAGCACTCTGGCCAGCTGCAGGCTCCTTCCTTCCAGACAAATGTAGGCTGGCTCCT GTTGCAATGAAAACCAGCACCCAGTGACACTTGGGCGAAGCTTGCTTAACGAGGGGGTGGGGCTGAGCTTTGAAGTGCA AATGTCACATGGCAGGAGTTTAGAAATGGCTTTGCAGGGGAAGCCAGGAGGTGAACAGGGCTGTGGAGAAAGGACCTGC ACTGGCATCAGTCTGTGTTTACATTTCTGCCTCTCCGTCCTTACACAAGCTGTGAAACCTCTGTGAGCAGCTTTGCATG TGTAACCTCTGTGGCCGCGCCGCCTCAGAACAGGCAGCTGTGATGGCTGCGCTCAGAGCACAGCCCCCCTCCGCCAGCT CTGTCAGCCTCACCGCCGTGTGCAGGTGGCTCACAGACCCAACGCCAGCATCTCATTTTATTTTTCCAGGTTGTCCAAA CAAAGGTTTTGTCAAAAGAAGGTTAGTCGGGGCGAGGGCAGCCTGCCCTCATCCTGCTGGGGTGGTTTTTGAGGCGTGG ATGTTTTCAAAGACCCGGGAGGAAGGAGCATTGCATTTGTGGCTGACACCCAATGTAAGAGCTGTGGTGCTGCTCCGCT GCCACACGGCTGCACTCCCGTGTGCCACAACAAAGCTGCAAGGTTTGGTCACCGCGGGCTCTGCTTTGATTGCTACGAT GGCACATACTGAGGCTTCAGCCAGCACCCGGGTTTCAGGCAGGGCTTTGATTAGCGGCATCTCCTCCACAACGTGGGAG GAGGCCCAAAAAGCATTGTCTCAAGGCTCCTGAGGGCCCCACCGCCGGAGGCAACGCAGCAGCCCTGCGCTGTCCCCTG CCTTGGTACGACCGGCCCACGCTTAGCGTAGGCAGCATCTGCTGGGGCTGGGATGAGGCAGAGATGTGGCACGCGGCTC CCAGGCAGCCGAGCGCTCCAAACAGGTGTTCCCATGTGGCACTGCCTTGGAGAGGCGCAGAGGCCGCAGCACACCAGCA GAGCAGAGCTGGCCAGGCTGGCTGTGCATGGCCGGCCAGCAGCAGGGGGGGCAAACAGCCACACCTGGGCAGAAGGGAG GGCTACCACGGGAAAAACAAAACAGAACACGTTGCCTACTGGTCTGCCCCTTCCCTGCCGTATGATTGCACAAATTGTT CCTCTTGCGTATCAGAGAGGGGAGCCGCCAGTCCGTACTGTGATGGCTTTGTTTTAATTCAAGTCTTATACTTGCTATT AAGTTTACACTTTATACTTGATGGAATGTATGGCTTTGTTCAGGAAGCTGCACTACAGTGTTGCAGTGCTTTCAGCAGC TCTCTCCTCTGCCAGGCACAATACAGCGTGGTAAGTTTCATTTCAATGGAAAAGAGCCGAGCCAATCCTAACCTATCAT CTCGCCCTCTGTCCTAAAGGAGCGGACTGTGGCTTGAGTAGCACATAAAGGCAGATCAGCTGTACTTAAGGGCTGTGAT TTTTAATATTCTTAACCTGACCTTTTAAAGCAGCATCAAACTAATCGATAATAAAGCACAGTAACAACCACTGAAGGAC AGGCATCGGCCGTTTGCTGGCTGCAGTCAGACAGACGTCTCACGAGTTGAGCTCCGTTGCAGTCGTTGGCTGGAAGCGC ATTAGAAGGAAACGCGATCGTTTTGTTCAACAGTGACCTTCTGTACAGGCAGAAGTACACCTCGCAACTTCTGCTTGGA AAGCTGTAACATAGAATCTGTTTGCGTGGGTCTGATCCTGTGAACCTCACTCTGTGTGTTTATATGATGAGAAAACTGA AACCAGTCCTATTCTGTATTTGTACTACTGCTCGTTTGCTGCAATAGCATTCATGATTTCTAGAGATTAAGTATGTGTT GAAGCAGGCCCTGTAGCTTTACCTACGGCCTGGAATAGGATTCTCGCCTTGTATCGGAGCCTCCTAACCAGCTTCACTC TGTTGTAGCCCATTTAAAGTCATGCTGGGACTTTGTAACCCATGAAGTGAATCTCACAAAGTGACGTGAAGTATAACGA AGTGATTGTAGCTCTTGTGGTAGGTTTGGGACCTCACAGAACATTGGCACAACTCCCACCCTCACAGTCTGCCGTTCCT CGGACACAACAAGGTATGACTAAAGCTGCCTTCTGGCAACCCAACAATTGTAGTCGCATTCTCTGAAATGAAAGCGAAC CTCTCTTGAACCGATTTCCACATGTTTACAGGCAAACCGCTATTGCAAACAGCTTATTTTCTAACACTAGCTTACAGAG CATTATTTTGCAGTCATTTAAAGTCAAATGCTTCTAACGTGTAAAGTAATTCCTGTTGTACAGAAGTTAACCTGTTGTT TAAAATGAATGGTTTGAAAAAAGTGCAAACGACAAATACATGTTGGTGTTTGTATGGGTTTATCTCGAATAAAACGCAT CGGAAGGCTGGTTAGGTTACTTGGTGTATTTTACAGCGGTTAAGAGAGCAAACAGCTTTGTAGCGGTGCCCGGGCCACG GCAGGAGGGGA
Citation	Mauti O, Sadhu R, Gemayel J, Gesemann M, Stoeckli ET. Expression patterns of plexins and neuropilins are consistent with cooperative and separate functions during neural development. BMC Dev Biol. 2006; 6: 32. Published online 2006 July 17.
Copyright	), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #XM_416143.3 ).

Stage

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Location (click to highlight)

Comments (click to highlight)

13-18

stage 18

stage 18

19-24

stage 22

stage 22

stage 22

stage 22

Notochord
Paraxial Mesoderm
Spinal Cord
Spinal Ganglia and Nerves
Surface Ectoderm

25-30

stage 25

stage 25

stage 30

stage 30

Spinal Cord
Spinal Ganglia and Nerves
Surface Ectoderm
Trunk Mesenchyme

31-40

stage 35

stage 35

stage 40

stage 40

Spinal Cord
Spinal Ganglia and Nerves

Data from NCBI Unigene EST Profile
Unigene ID: Gga.55785

Mouse

Emage
Eurexpress
MGI GXD

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN

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