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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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WNT5B
Wnt family member 5B

Gene

Official Symbol	WNT5B
Official Full Name	Wnt family member 5B
CGNC ID	9838
also known as	protein Wnt-5b\|wingless-type MMTV integration site family, member 5B, Wnt-5b, wingless-type MMTV integration site family, member 5B
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001037269
Polypeptide	NP_001032346
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.7960

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	32838			FBgn0010194
Human	81029	ENSG00000111186		MIM:606361
Mouse	22419	ENSMUSG00000030170	All phenotypic alleles (6):Targeted, knock-out(2) Targeted, other(4)	MGI:98959
Xenopus	448452, 379842			480395
Zebrafish	30105	ENSDARG00000034894	ZDB-GENE-980526-87	ZFIN:ZDB-GENE-980526-87

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	418154
Ensembl Gene	ENSGALG00000012998
KEGG	gga:418154

Entry 1

GEISHA Id	WNT5B.UAlinear	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show CACCATGACGGGGCCGAGGCTGGCGCTCGCCGCCGCGCTTCTCTGCAGCTGCACCTCGCCGGTGGCCGACGCCAACTCC TGGTGGTCTTTGGCCATGAACCCCATCCAGAGGCCGGAGATGTACATCATCGGCGCGCAGCCCGTGTGCAGCCAGCTGC CGGGGCTGTCCCCGGGGCAGCGCAAGCTGTGCCAGCTCTACCAGGAGCACATGGTGTTCATCGGCGAAGGGGCCCGCAG TGCCATCAAGGAGTGCCAGTACCAGTTCCGGCAGCGCAGGTGGAACTGCAGCACGGTGGACAACACGTCCGTCTTCGGC CGGGTCATGAAAATAGGTAGCCGAGAGACCGCTTTCACCTACGCCGTCAGCGCCGCCGGGGTGGTGAACGCCATCAGCC GTGCCTGCCGTGAGGGAGAGCTGTCCAGCTGTGGCTGCAGCCGCACGGCCCGGCCCAAGGACTTGCCCCGAGACTGGCT GTGGGGCGGCTGCGGGGATAACGTGGAGTACGGGTACCGTTTCGCCAAGGAGTTTGTGGATGCCAAGGAGAGGGAGAAG AACTACGTGAGAGGCTCCGAGGAGCAGGCTCGCATGCTGATGAACCTGCAGAACAACGAGGCTGGGCGCAGGGCCGTGT ACAAGCTGGCGGACGTGGCCTGCAAGTGCCACGGCGTGTCGGGCTCCTGCAGCCTCAAGACGTGCTGGCTGCAGCTGGC AGACTTCCGCAAGGTGGGCGACCTGCTGAAGGAGAAGTACGACAGCGCGGCCGCCATGCGGATCAGTCGCAAGGGCAAG CTGGAGCTCGTGAACAACCGCTTCAACATGCCCACGCAGGAGGACCTGGTCTACGTCGACCCCAGCCCGGACTATTGCC TGCGCAATGAGACCACCGGCTCGCTGGGCACGCAGGGCCGCCTGTGCAACAAGACCTCAGAGGGCATGGATGGGTGTGA GCTGATGTGCTGTGGACGGGGCTACGACCAATTCAAGAGCGTTCAGGTGGAGCGTTGCCACTGCAAGTTCCATTGGTGC TGTTACGTCAAGTGTAAAAAGTGCACAGAGATCGTTGACCAGTACGTCTGTAAATGAAAAGAGCC

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

Early Mesoderm
Primitive Streak

7-12

stage 8

stage 9

stage 11

Lateral Plate Mesoderm
Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Somites

Dorsal view.

13-18

stage 13

stage 15

stage 16

Blood Vessels
Head Mesenchyme
Lateral Plate Mesoderm
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Somites
Tail

Dorsal view.

19-24

stage 22

stage 24

Ear/Otic Placode
Head Mesenchyme
Lateral Plate Mesoderm
Leg AER
Leg Mesenchyme
Neural Plate/Tube
Pharyngeal Arches and Clefts
Wing AER
Wing Mesenchyme

Entry 2

GEISHA Id	Wnt5b.Chapman.2004	Data Source	Publication
Complete cDNA Template Probe	show CACCATGACGGGGCCGAGGCTGGCGCTCGCCGCCGCGCTTCTCTGCAGCTGCACCTCGCCGGTGGCCGACGCCAACTCC TGGTGGTCTTTGGCCATGAACCCCATCCAGAGGCCGGAGATGTACATCATCGGCGCGCAGCCCGTGTGCAGCCAGCTGC CGGGGCTGTCCCCGGGGCAGCGCAAGCTGTGCCAGCTCTACCAGGAGCACATGGTGTTCATCGGCGAAGGGGCCCGCAG TGCCATCAAGGAGTGCCAGTACCAGTTCCGGCAGCGCAGGTGGAACTGCAGCACGGTGGACAACACGTCCGTCTTCGGC CGGGTCATGAAAATAGGTAGCCGAGAGACCGCTTTCACCTACGCCGTCAGCGCCGCCGGGGTGGTGAACGCCATCAGCC GTGCCTGCCGTGAGGGAGAGCTGTCCAGCTGTGGCTGCAGCCGCACGGCCCGGCCCAAGGACTTGCCCCGAGACTGGCT GTGGGGCGGCTGCGGGGATAACGTGGAGTACGGGTACCGTTTCGCCAAGGAGTTTGTGGATGCCAAGGAGAGGGAGAAG AACTACGTGAGAGGCTCCGAGGAGCAGGCTCGCATGCTGATGAACCTGCAGAACAACGAGGCTGGGCGCAGGGCCGTGT ACAAGCTGGCGGACGTGGCCTGCAAGTGCCACGGCGTGTCGGGCTCCTGCAGCCTCAAGACGTGCTGGCTGCAGCTGGC AGACTTCCGCAAGGTGGGCGACCTGCTGAAGGAGAAGTACGACAGCGCGGCCGCCATGCGGATCAGTCGCAAGGGCAAG CTGGAGCTCGTGAACAACCGCTTCAACATGCCCACGCAGGAGGACCTGGTCTACGTCGACCCCAGCCCGGACTATTGCC TGCGCAATGAGACCACCGGCTCGCTGGGCACGCAGGGCCGCCTGTGCAACAAGACCTCAGAGGGCATGGATGGGTGTGA GCTGATGTGCTGTGGACGGGGCTACGACCAATTCAAGAGCGTTCAGGTGGAGCGTTGCCACTGCAAGTTCCATTGGTGC TGTTACGTCAAGTGTAAAAAGTGCACAGAGATCGTTGACCAGTACGTCTGTAAATGAAAAGAGCC
Citation	Chapman, S, Brown, R, Lees, L, Schoenwolf, G, Lumsden, A. Expression Analysis of Chick Wnt and Frizzled Genes and Selected Inhibitors in Early Chick Patterning. Dev Dyn. 2004 Mar;229(3):668-76.
Copyright	Wiley-Liss, Inc. 2004

Stage

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Location (click to highlight)

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4-5

stage 4

stage 5

Primitive Streak

Entry 3

GEISHA Id	Wnt5b.Fokina.2006	Data Source	Publication
Complete cDNA Template Probe	show CACCATGACGGGGCCGAGGCTGGCGCTCGCCGCCGCGCTTCTCTGCAGCTGCACCTCGCCGGTGGCCGACGCCAACTCC TGGTGGTCTTTGGCCATGAACCCCATCCAGAGGCCGGAGATGTACATCATCGGCGCGCAGCCCGTGTGCAGCCAGCTGC CGGGGCTGTCCCCGGGGCAGCGCAAGCTGTGCCAGCTCTACCAGGAGCACATGGTGTTCATCGGCGAAGGGGCCCGCAG TGCCATCAAGGAGTGCCAGTACCAGTTCCGGCAGCGCAGGTGGAACTGCAGCACGGTGGACAACACGTCCGTCTTCGGC CGGGTCATGAAAATAGGTAGCCGAGAGACCGCTTTCACCTACGCCGTCAGCGCCGCCGGGGTGGTGAACGCCATCAGCC GTGCCTGCCGTGAGGGAGAGCTGTCCAGCTGTGGCTGCAGCCGCACGGCCCGGCCCAAGGACTTGCCCCGAGACTGGCT GTGGGGCGGCTGCGGGGATAACGTGGAGTACGGGTACCGTTTCGCCAAGGAGTTTGTGGATGCCAAGGAGAGGGAGAAG AACTACGTGAGAGGCTCCGAGGAGCAGGCTCGCATGCTGATGAACCTGCAGAACAACGAGGCTGGGCGCAGGGCCGTGT ACAAGCTGGCGGACGTGGCCTGCAAGTGCCACGGCGTGTCGGGCTCCTGCAGCCTCAAGACGTGCTGGCTGCAGCTGGC AGACTTCCGCAAGGTGGGCGACCTGCTGAAGGAGAAGTACGACAGCGCGGCCGCCATGCGGATCAGTCGCAAGGGCAAG CTGGAGCTCGTGAACAACCGCTTCAACATGCCCACGCAGGAGGACCTGGTCTACGTCGACCCCAGCCCGGACTATTGCC TGCGCAATGAGACCACCGGCTCGCTGGGCACGCAGGGCCGCCTGTGCAACAAGACCTCAGAGGGCATGGATGGGTGTGA GCTGATGTGCTGTGGACGGGGCTACGACCAATTCAAGAGCGTTCAGGTGGAGCGTTGCCACTGCAAGTTCCATTGGTGC TGTTACGTCAAGTGTAAAAAGTGCACAGAGATCGTTGACCAGTACGTCTGTAAATGAAAAGAGCC
Citation	Fokina VM, Frolova EI. Expression patterns of Wnt genes during development of an anterior part of the chicken eye. Dev Dyn. 2006 Feb;235(2):496-505.
Copyright	Copyright © 2008 Wiley-Liss, Inc.

Stage

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Location (click to highlight)

Comments (click to highlight)

19-24

stage 19

stage 23

Eye
Lens
Retina

stage 31

Eye

Entry 4

GEISHA Id	Wnt5b.Hardy.2008	Data Source	Publication
Complete cDNA Template Probe	show CACCATGACGGGGCCGAGGCTGGCGCTCGCCGCCGCGCTTCTCTGCAGCTGCACCTCGCCGGTGGCCGACGCCAACTCC TGGTGGTCTTTGGCCATGAACCCCATCCAGAGGCCGGAGATGTACATCATCGGCGCGCAGCCCGTGTGCAGCCAGCTGC CGGGGCTGTCCCCGGGGCAGCGCAAGCTGTGCCAGCTCTACCAGGAGCACATGGTGTTCATCGGCGAAGGGGCCCGCAG TGCCATCAAGGAGTGCCAGTACCAGTTCCGGCAGCGCAGGTGGAACTGCAGCACGGTGGACAACACGTCCGTCTTCGGC CGGGTCATGAAAATAGGTAGCCGAGAGACCGCTTTCACCTACGCCGTCAGCGCCGCCGGGGTGGTGAACGCCATCAGCC GTGCCTGCCGTGAGGGAGAGCTGTCCAGCTGTGGCTGCAGCCGCACGGCCCGGCCCAAGGACTTGCCCCGAGACTGGCT GTGGGGCGGCTGCGGGGATAACGTGGAGTACGGGTACCGTTTCGCCAAGGAGTTTGTGGATGCCAAGGAGAGGGAGAAG AACTACGTGAGAGGCTCCGAGGAGCAGGCTCGCATGCTGATGAACCTGCAGAACAACGAGGCTGGGCGCAGGGCCGTGT ACAAGCTGGCGGACGTGGCCTGCAAGTGCCACGGCGTGTCGGGCTCCTGCAGCCTCAAGACGTGCTGGCTGCAGCTGGC AGACTTCCGCAAGGTGGGCGACCTGCTGAAGGAGAAGTACGACAGCGCGGCCGCCATGCGGATCAGTCGCAAGGGCAAG CTGGAGCTCGTGAACAACCGCTTCAACATGCCCACGCAGGAGGACCTGGTCTACGTCGACCCCAGCCCGGACTATTGCC TGCGCAATGAGACCACCGGCTCGCTGGGCACGCAGGGCCGCCTGTGCAACAAGACCTCAGAGGGCATGGATGGGTGTGA GCTGATGTGCTGTGGACGGGGCTACGACCAATTCAAGAGCGTTCAGGTGGAGCGTTGCCACTGCAAGTTCCATTGGTGC TGTTACGTCAAGTGTAAAAAGTGCACAGAGATCGTTGACCAGTACGTCTGTAAATGAAAAGAGCC
Citation	Hardy KM, Garriock RJ, Yatskievych TA, D'Agostino SL, Antin PB, Krieg PA. Non-canonical Wnt signaling through Wnt5a/b and a novel Wnt11 gene, Wnt11b, regulates cell migration during avian gastrulation. Dev Biol. 2008 Aug 15;320(2):391-401. Epub 2008 May 29.
Copyright	"Reprinted from Developmental Biology, 320, Hardy, KM, Garriock, RJ, Yatskievych, TA, D'Agostino, SL, Antin, PB, Krieg, PA. Non-canonical Wnt signaling through Wnt5a/b and a novel Wnt11 gene, Wnt11b, regulates cell migration during avian gastrulation., Pages No., Copyright (2008), with permission from Elsevier". Copyright © 2008 Elsevier B.V. All rights reserved.
Comments	The authors said: Wnt5a (Accession # AB006014) and Wnt5b (Accession # AY753289) templates were prepared by linearizing with EcoRI and transcribing with T3 polymerase. AY753289= NM_001037269.1

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

Early Mesoderm
Epiblast
Primitive Streak

7-12

stage 7

stage 11

Early Mesoderm
Epiblast
Primitive Streak

stage 13

Fig. 2 compares expression for several Wnts at several stages.

Entry 5

GEISHA Id	Wnt5b.Chapman.2008	Data Source	Direct Submission
Complete cDNA Template Probe	show CACCATGACGGGGCCGAGGCTGGCGCTCGCCGCCGCGCTTCTCTGCAGCTGCACCTCGCCGGTGGCCGACGCCAACTCC TGGTGGTCTTTGGCCATGAACCCCATCCAGAGGCCGGAGATGTACATCATCGGCGCGCAGCCCGTGTGCAGCCAGCTGC CGGGGCTGTCCCCGGGGCAGCGCAAGCTGTGCCAGCTCTACCAGGAGCACATGGTGTTCATCGGCGAAGGGGCCCGCAG TGCCATCAAGGAGTGCCAGTACCAGTTCCGGCAGCGCAGGTGGAACTGCAGCACGGTGGACAACACGTCCGTCTTCGGC CGGGTCATGAAAATAGGTAGCCGAGAGACCGCTTTCACCTACGCCGTCAGCGCCGCCGGGGTGGTGAACGCCATCAGCC GTGCCTGCCGTGAGGGAGAGCTGTCCAGCTGTGGCTGCAGCCGCACGGCCCGGCCCAAGGACTTGCCCCGAGACTGGCT GTGGGGCGGCTGCGGGGATAACGTGGAGTACGGGTACCGTTTCGCCAAGGAGTTTGTGGATGCCAAGGAGAGGGAGAAG AACTACGTGAGAGGCTCCGAGGAGCAGGCTCGCATGCTGATGAACCTGCAGAACAACGAGGCTGGGCGCAGGGCCGTGT ACAAGCTGGCGGACGTGGCCTGCAAGTGCCACGGCGTGTCGGGCTCCTGCAGCCTCAAGACGTGCTGGCTGCAGCTGGC AGACTTCCGCAAGGTGGGCGACCTGCTGAAGGAGAAGTACGACAGCGCGGCCGCCATGCGGATCAGTCGCAAGGGCAAG CTGGAGCTCGTGAACAACCGCTTCAACATGCCCACGCAGGAGGACCTGGTCTACGTCGACCCCAGCCCGGACTATTGCC TGCGCAATGAGACCACCGGCTCGCTGGGCACGCAGGGCCGCCTGTGCAACAAGACCTCAGAGGGCATGGATGGGTGTGA GCTGATGTGCTGTGGACGGGGCTACGACCAATTCAAGAGCGTTCAGGTGGAGCGTTGCCACTGCAAGTTCCATTGGTGC TGTTACGTCAAGTGTAAAAAGTGCACAGAGATCGTTGACCAGTACGTCTGTAAATGAAAAGAGCC
Comments	Images Provided by Susan Chapman.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Primitive Streak

4-6

stage 4

stage 5

Area Pellucida
Epiblast
Neural Plate/Tube
Primitive Streak

7-10

stage 8

stage 10

Anterior Intestinal Portal
Epiblast
Forebrain
Head Mesenchyme
Midbrain
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Somites
Trunk Mesenchyme

Entry 6

GEISHA Id	Wnt5b.Theodosiou.2003	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show CACCATGACGGGGCCGAGGCTGGCGCTCGCCGCCGCGCTTCTCTGCAGCTGCACCTCGCCGGTGGCCGACGCCAACTCC TGGTGGTCTTTGGCCATGAACCCCATCCAGAGGCCGGAGATGTACATCATCGGCGCGCAGCCCGTGTGCAGCCAGCTGC CGGGGCTGTCCCCGGGGCAGCGCAAGCTGTGCCAGCTCTACCAGGAGCACATGGTGTTCATCGGCGAAGGGGCCCGCAG TGCCATCAAGGAGTGCCAGTACCAGTTCCGGCAGCGCAGGTGGAACTGCAGCACGGTGGACAACACGTCCGTCTTCGGC CGGGTCATGAAAATAGGTAGCCGAGAGACCGCTTTCACCTACGCCGTCAGCGCCGCCGGGGTGGTGAACGCCATCAGCC GTGCCTGCCGTGAGGGAGAGCTGTCCAGCTGTGGCTGCAGCCGCACGGCCCGGCCCAAGGACTTGCCCCGAGACTGGCT GTGGGGCGGCTGCGGGGATAACGTGGAGTACGGGTACCGTTTCGCCAAGGAGTTTGTGGATGCCAAGGAGAGGGAGAAG AACTACGTGAGAGGCTCCGAGGAGCAGGCTCGCATGCTGATGAACCTGCAGAACAACGAGGCTGGGCGCAGGGCCGTGT ACAAGCTGGCGGACGTGGCCTGCAAGTGCCACGGCGTGTCGGGCTCCTGCAGCCTCAAGACGTGCTGGCTGCAGCTGGC AGACTTCCGCAAGGTGGGCGACCTGCTGAAGGAGAAGTACGACAGCGCGGCCGCCATGCGGATCAGTCGCAAGGGCAAG CTGGAGCTCGTGAACAACCGCTTCAACATGCCCACGCAGGAGGACCTGGTCTACGTCGACCCCAGCCCGGACTATTGCC TGCGCAATGAGACCACCGGCTCGCTGGGCACGCAGGGCCGCCTGTGCAACAAGACCTCAGAGGGCATGGATGGGTGTGA GCTGATGTGCTGTGGACGGGGCTACGACCAATTCAAGAGCGTTCAGGTGGAGCGTTGCCACTGCAAGTTCCATTGGTGC TGTTACGTCAAGTGTAAAAAGTGCACAGAGATCGTTGACCAGTACGTCTGTAAATGAAAAGAGCC
Comments	The authors indicate the probe is a ~400 bp fragment. As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_001037269.1).

Stage

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Location (click to highlight)

Comments (click to highlight)

19-24

stage 24

Foregut
Midgut

proventriculus, ceca

Entry 7

GEISHA Id	Wnt5b.McBride.2003	Data Source	Publication
Complete cDNA Template Probe	show CACCATGACGGGGCCGAGGCTGGCGCTCGCCGCCGCGCTTCTCTGCAGCTGCACCTCGCCGGTGGCCGACGCCAACTCC TGGTGGTCTTTGGCCATGAACCCCATCCAGAGGCCGGAGATGTACATCATCGGCGCGCAGCCCGTGTGCAGCCAGCTGC CGGGGCTGTCCCCGGGGCAGCGCAAGCTGTGCCAGCTCTACCAGGAGCACATGGTGTTCATCGGCGAAGGGGCCCGCAG TGCCATCAAGGAGTGCCAGTACCAGTTCCGGCAGCGCAGGTGGAACTGCAGCACGGTGGACAACACGTCCGTCTTCGGC CGGGTCATGAAAATAGGTAGCCGAGAGACCGCTTTCACCTACGCCGTCAGCGCCGCCGGGGTGGTGAACGCCATCAGCC GTGCCTGCCGTGAGGGAGAGCTGTCCAGCTGTGGCTGCAGCCGCACGGCCCGGCCCAAGGACTTGCCCCGAGACTGGCT GTGGGGCGGCTGCGGGGATAACGTGGAGTACGGGTACCGTTTCGCCAAGGAGTTTGTGGATGCCAAGGAGAGGGAGAAG AACTACGTGAGAGGCTCCGAGGAGCAGGCTCGCATGCTGATGAACCTGCAGAACAACGAGGCTGGGCGCAGGGCCGTGT ACAAGCTGGCGGACGTGGCCTGCAAGTGCCACGGCGTGTCGGGCTCCTGCAGCCTCAAGACGTGCTGGCTGCAGCTGGC AGACTTCCGCAAGGTGGGCGACCTGCTGAAGGAGAAGTACGACAGCGCGGCCGCCATGCGGATCAGTCGCAAGGGCAAG CTGGAGCTCGTGAACAACCGCTTCAACATGCCCACGCAGGAGGACCTGGTCTACGTCGACCCCAGCCCGGACTATTGCC TGCGCAATGAGACCACCGGCTCGCTGGGCACGCAGGGCCGCCTGTGCAACAAGACCTCAGAGGGCATGGATGGGTGTGA GCTGATGTGCTGTGGACGGGGCTACGACCAATTCAAGAGCGTTCAGGTGGAGCGTTGCCACTGCAAGTTCCATTGGTGC TGTTACGTCAAGTGTAAAAAGTGCACAGAGATCGTTGACCAGTACGTCTGTAAATGAAAAGAGCC
Citation	McBride HJ, Fatke B, Fraser SE. Wnt signaling components in the chicken intestinal tract. Dev Biol. 2003 Apr 1;256(1):18-33.
Copyright	With permission from Elsevier Copyright © 2003 Elsevier B.V. All rights reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_001037269.1).

Stage

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Location (click to highlight)

Comments (click to highlight)

25-30

stage 30

Hindgut

ceca

Entry 8

GEISHA Id	Wnt5b.Garcia-Castro.2002	Data Source	Publication
Complete cDNA Template Probe	show CACCATGACGGGGCCGAGGCTGGCGCTCGCCGCCGCGCTTCTCTGCAGCTGCACCTCGCCGGTGGCCGACGCCAACTCC TGGTGGTCTTTGGCCATGAACCCCATCCAGAGGCCGGAGATGTACATCATCGGCGCGCAGCCCGTGTGCAGCCAGCTGC CGGGGCTGTCCCCGGGGCAGCGCAAGCTGTGCCAGCTCTACCAGGAGCACATGGTGTTCATCGGCGAAGGGGCCCGCAG TGCCATCAAGGAGTGCCAGTACCAGTTCCGGCAGCGCAGGTGGAACTGCAGCACGGTGGACAACACGTCCGTCTTCGGC CGGGTCATGAAAATAGGTAGCCGAGAGACCGCTTTCACCTACGCCGTCAGCGCCGCCGGGGTGGTGAACGCCATCAGCC GTGCCTGCCGTGAGGGAGAGCTGTCCAGCTGTGGCTGCAGCCGCACGGCCCGGCCCAAGGACTTGCCCCGAGACTGGCT GTGGGGCGGCTGCGGGGATAACGTGGAGTACGGGTACCGTTTCGCCAAGGAGTTTGTGGATGCCAAGGAGAGGGAGAAG AACTACGTGAGAGGCTCCGAGGAGCAGGCTCGCATGCTGATGAACCTGCAGAACAACGAGGCTGGGCGCAGGGCCGTGT ACAAGCTGGCGGACGTGGCCTGCAAGTGCCACGGCGTGTCGGGCTCCTGCAGCCTCAAGACGTGCTGGCTGCAGCTGGC AGACTTCCGCAAGGTGGGCGACCTGCTGAAGGAGAAGTACGACAGCGCGGCCGCCATGCGGATCAGTCGCAAGGGCAAG CTGGAGCTCGTGAACAACCGCTTCAACATGCCCACGCAGGAGGACCTGGTCTACGTCGACCCCAGCCCGGACTATTGCC TGCGCAATGAGACCACCGGCTCGCTGGGCACGCAGGGCCGCCTGTGCAACAAGACCTCAGAGGGCATGGATGGGTGTGA GCTGATGTGCTGTGGACGGGGCTACGACCAATTCAAGAGCGTTCAGGTGGAGCGTTGCCACTGCAAGTTCCATTGGTGC TGTTACGTCAAGTGTAAAAAGTGCACAGAGATCGTTGACCAGTACGTCTGTAAATGAAAAGAGCC
Citation	García-Castro MI, Marcelle C, Bronner-Fraser M. Ectodermal Wnt function as a neural crest inducer. Science. 2002 Aug 2;297(5582):848-51.
Copyright	Copyright © 2002, The American Association for the Advancement of Science
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc. #NM_001037269.1)

Stage

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Location (click to highlight)

Comments (click to highlight)

7-10

stage 10

Neural Plate/Tube

Caudal NP

Entry 9

GEISHA Id	Wnt5B.Quinlan.2009	Data Source	Publication
Complete cDNA Template Probe	show CACCATGACGGGGCCGAGGCTGGCGCTCGCCGCCGCGCTTCTCTGCAGCTGCACCTCGCCGGTGGCCGACGCCAACTCC TGGTGGTCTTTGGCCATGAACCCCATCCAGAGGCCGGAGATGTACATCATCGGCGCGCAGCCCGTGTGCAGCCAGCTGC CGGGGCTGTCCCCGGGGCAGCGCAAGCTGTGCCAGCTCTACCAGGAGCACATGGTGTTCATCGGCGAAGGGGCCCGCAG TGCCATCAAGGAGTGCCAGTACCAGTTCCGGCAGCGCAGGTGGAACTGCAGCACGGTGGACAACACGTCCGTCTTCGGC CGGGTCATGAAAATAGGTAGCCGAGAGACCGCTTTCACCTACGCCGTCAGCGCCGCCGGGGTGGTGAACGCCATCAGCC GTGCCTGCCGTGAGGGAGAGCTGTCCAGCTGTGGCTGCAGCCGCACGGCCCGGCCCAAGGACTTGCCCCGAGACTGGCT GTGGGGCGGCTGCGGGGATAACGTGGAGTACGGGTACCGTTTCGCCAAGGAGTTTGTGGATGCCAAGGAGAGGGAGAAG AACTACGTGAGAGGCTCCGAGGAGCAGGCTCGCATGCTGATGAACCTGCAGAACAACGAGGCTGGGCGCAGGGCCGTGT ACAAGCTGGCGGACGTGGCCTGCAAGTGCCACGGCGTGTCGGGCTCCTGCAGCCTCAAGACGTGCTGGCTGCAGCTGGC AGACTTCCGCAAGGTGGGCGACCTGCTGAAGGAGAAGTACGACAGCGCGGCCGCCATGCGGATCAGTCGCAAGGGCAAG CTGGAGCTCGTGAACAACCGCTTCAACATGCCCACGCAGGAGGACCTGGTCTACGTCGACCCCAGCCCGGACTATTGCC TGCGCAATGAGACCACCGGCTCGCTGGGCACGCAGGGCCGCCTGTGCAACAAGACCTCAGAGGGCATGGATGGGTGTGA GCTGATGTGCTGTGGACGGGGCTACGACCAATTCAAGAGCGTTCAGGTGGAGCGTTGCCACTGCAAGTTCCATTGGTGC TGTTACGTCAAGTGTAAAAAGTGCACAGAGATCGTTGACCAGTACGTCTGTAAATGAAAAGAGCC
Citation	Quinlan R, Graf M, Mason I, Lumsden A, Kiecker C. Complex and dynamic patterns of Wnt pathway gene expression in the developing chick forebrain. Neural Dev. 2009 Sep 4;4:35.
Copyright	Copyright © 2009 Quinlan et al; licensee BioMed Central Ltd. [This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.]
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_001037269.1).

no images

Entry 10

GEISHA Id	WNT5B.Geetha-Loganathan.2009	Data Source	Publication
Complete cDNA Template Probe	show CACCATGACGGGGCCGAGGCTGGCGCTCGCCGCCGCGCTTCTCTGCAGCTGCACCTCGCCGGTGGCCGACGCCAACTCC TGGTGGTCTTTGGCCATGAACCCCATCCAGAGGCCGGAGATGTACATCATCGGCGCGCAGCCCGTGTGCAGCCAGCTGC CGGGGCTGTCCCCGGGGCAGCGCAAGCTGTGCCAGCTCTACCAGGAGCACATGGTGTTCATCGGCGAAGGGGCCCGCAG TGCCATCAAGGAGTGCCAGTACCAGTTCCGGCAGCGCAGGTGGAACTGCAGCACGGTGGACAACACGTCCGTCTTCGGC CGGGTCATGAAAATAGGTAGCCGAGAGACCGCTTTCACCTACGCCGTCAGCGCCGCCGGGGTGGTGAACGCCATCAGCC GTGCCTGCCGTGAGGGAGAGCTGTCCAGCTGTGGCTGCAGCCGCACGGCCCGGCCCAAGGACTTGCCCCGAGACTGGCT GTGGGGCGGCTGCGGGGATAACGTGGAGTACGGGTACCGTTTCGCCAAGGAGTTTGTGGATGCCAAGGAGAGGGAGAAG AACTACGTGAGAGGCTCCGAGGAGCAGGCTCGCATGCTGATGAACCTGCAGAACAACGAGGCTGGGCGCAGGGCCGTGT ACAAGCTGGCGGACGTGGCCTGCAAGTGCCACGGCGTGTCGGGCTCCTGCAGCCTCAAGACGTGCTGGCTGCAGCTGGC AGACTTCCGCAAGGTGGGCGACCTGCTGAAGGAGAAGTACGACAGCGCGGCCGCCATGCGGATCAGTCGCAAGGGCAAG CTGGAGCTCGTGAACAACCGCTTCAACATGCCCACGCAGGAGGACCTGGTCTACGTCGACCCCAGCCCGGACTATTGCC TGCGCAATGAGACCACCGGCTCGCTGGGCACGCAGGGCCGCCTGTGCAACAAGACCTCAGAGGGCATGGATGGGTGTGA GCTGATGTGCTGTGGACGGGGCTACGACCAATTCAAGAGCGTTCAGGTGGAGCGTTGCCACTGCAAGTTCCATTGGTGC TGTTACGTCAAGTGTAAAAAGTGCACAGAGATCGTTGACCAGTACGTCTGTAAATGAAAAGAGCC
Citation	Geetha-Loganathan, P, Nimmagadda, S, Antoni, L, Fu, K, Whiting, C, Francis-West, P and Richman, J. Expression of WNT signalling pathway genes during chicken craniofacial development. DEVELOPMENTAL DYNAMICS Volume 238, Issue 5, May 2009, Pages: 11501165.
Copyright	Dev. Dyn Copyright © 2009 John Wiley & Sons, Inc. All Rights Reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_001037269).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

1-3

stage 1

13-18

stage 18

Isthmus/MHB
Pharyngeal Arches and Clefts
Retina
Surface Ectoderm

19-24

stage 20

stage 24

Face Mesenchyme
Pharyngeal Arches and Clefts
Retina
Surface Ectoderm

25-28

stage 28

Face Mesenchyme
Pharyngeal Arches and Clefts
Retina
Surface Ectoderm

Entry 11

GEISHA Id	WNT5B.Hardy.2011	Data Source	Publication
Complete cDNA Template Probe	show CACCATGACGGGGCCGAGGCTGGCGCTCGCCGCCGCGCTTCTCTGCAGCTGCACCTCGCCGGTGGCCGACGCCAACTCC TGGTGGTCTTTGGCCATGAACCCCATCCAGAGGCCGGAGATGTACATCATCGGCGCGCAGCCCGTGTGCAGCCAGCTGC CGGGGCTGTCCCCGGGGCAGCGCAAGCTGTGCCAGCTCTACCAGGAGCACATGGTGTTCATCGGCGAAGGGGCCCGCAG TGCCATCAAGGAGTGCCAGTACCAGTTCCGGCAGCGCAGGTGGAACTGCAGCACGGTGGACAACACGTCCGTCTTCGGC CGGGTCATGAAAATAGGTAGCCGAGAGACCGCTTTCACCTACGCCGTCAGCGCCGCCGGGGTGGTGAACGCCATCAGCC GTGCCTGCCGTGAGGGAGAGCTGTCCAGCTGTGGCTGCAGCCGCACGGCCCGGCCCAAGGACTTGCCCCGAGACTGGCT GTGGGGCGGCTGCGGGGATAACGTGGAGTACGGGTACCGTTTCGCCAAGGAGTTTGTGGATGCCAAGGAGAGGGAGAAG AACTACGTGAGAGGCTCCGAGGAGCAGGCTCGCATGCTGATGAACCTGCAGAACAACGAGGCTGGGCGCAGGGCCGTGT ACAAGCTGGCGGACGTGGCCTGCAAGTGCCACGGCGTGTCGGGCTCCTGCAGCCTCAAGACGTGCTGGCTGCAGCTGGC AGACTTCCGCAAGGTGGGCGACCTGCTGAAGGAGAAGTACGACAGCGCGGCCGCCATGCGGATCAGTCGCAAGGGCAAG CTGGAGCTCGTGAACAACCGCTTCAACATGCCCACGCAGGAGGACCTGGTCTACGTCGACCCCAGCCCGGACTATTGCC TGCGCAATGAGACCACCGGCTCGCTGGGCACGCAGGGCCGCCTGTGCAACAAGACCTCAGAGGGCATGGATGGGTGTGA GCTGATGTGCTGTGGACGGGGCTACGACCAATTCAAGAGCGTTCAGGTGGAGCGTTGCCACTGCAAGTTCCATTGGTGC TGTTACGTCAAGTGTAAAAAGTGCACAGAGATCGTTGACCAGTACGTCTGTAAATGAAAAGAGCC
Citation	Hardy KM, Yatskievych TA, Konieczka J, Bobbs AS, Antin PB. FGF signalling through RAS/MAPK and PI3K pathways regulates cell movement and gene expression in the chicken primitive streak without affecting E-cadherin expression. BMC Dev Biol. 2011 Mar 21;11:20.
Copyright	© 2011 Hardy et al; licensee BioMed Central Ltd.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_001037269).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

stage 4

Early Mesoderm
Epiblast
Primitive Streak

lateral and medial mesoderm; lateral and preingression mesoderm

Entry 12

GEISHA Id	WNT5B.Paxton.2010	Data Source	Publication
Complete cDNA Template Probe	show CACCATGACGGGGCCGAGGCTGGCGCTCGCCGCCGCGCTTCTCTGCAGCTGCACCTCGCCGGTGGCCGACGCCAACTCC TGGTGGTCTTTGGCCATGAACCCCATCCAGAGGCCGGAGATGTACATCATCGGCGCGCAGCCCGTGTGCAGCCAGCTGC CGGGGCTGTCCCCGGGGCAGCGCAAGCTGTGCCAGCTCTACCAGGAGCACATGGTGTTCATCGGCGAAGGGGCCCGCAG TGCCATCAAGGAGTGCCAGTACCAGTTCCGGCAGCGCAGGTGGAACTGCAGCACGGTGGACAACACGTCCGTCTTCGGC CGGGTCATGAAAATAGGTAGCCGAGAGACCGCTTTCACCTACGCCGTCAGCGCCGCCGGGGTGGTGAACGCCATCAGCC GTGCCTGCCGTGAGGGAGAGCTGTCCAGCTGTGGCTGCAGCCGCACGGCCCGGCCCAAGGACTTGCCCCGAGACTGGCT GTGGGGCGGCTGCGGGGATAACGTGGAGTACGGGTACCGTTTCGCCAAGGAGTTTGTGGATGCCAAGGAGAGGGAGAAG AACTACGTGAGAGGCTCCGAGGAGCAGGCTCGCATGCTGATGAACCTGCAGAACAACGAGGCTGGGCGCAGGGCCGTGT ACAAGCTGGCGGACGTGGCCTGCAAGTGCCACGGCGTGTCGGGCTCCTGCAGCCTCAAGACGTGCTGGCTGCAGCTGGC AGACTTCCGCAAGGTGGGCGACCTGCTGAAGGAGAAGTACGACAGCGCGGCCGCCATGCGGATCAGTCGCAAGGGCAAG CTGGAGCTCGTGAACAACCGCTTCAACATGCCCACGCAGGAGGACCTGGTCTACGTCGACCCCAGCCCGGACTATTGCC TGCGCAATGAGACCACCGGCTCGCTGGGCACGCAGGGCCGCCTGTGCAACAAGACCTCAGAGGGCATGGATGGGTGTGA GCTGATGTGCTGTGGACGGGGCTACGACCAATTCAAGAGCGTTCAGGTGGAGCGTTGCCACTGCAAGTTCCATTGGTGC TGTTACGTCAAGTGTAAAAAGTGCACAGAGATCGTTGACCAGTACGTCTGTAAATGAAAAGAGCC
Citation	Paxton CN, Bleyl SB, Chapman SC, Schoenwolf GC. Identification of differentially expressed genes in early inner ear development. Gene Expr Patterns. 2010 Jan;10(1):31-43. Epub 2009 Nov 11.
Copyright	2009 Elsevier B.V. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_001037269).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 6

Primitive Streak

7-9

stage 8

stage 9

Ear/Otic Placode
Neural Plate/Tube
Primitive Streak
Somites
Tail

Entry 13

GEISHA Id	WNT5B.Sienknecht.2009	Data Source	Publication
Complete cDNA Template Probe	show `AAGTGCCACGGCGTGTCGGGCTCCTGCAGCCTCAAGACGTGCTGGCTGCAGCTGGCAGACTTCCGCAAGGTGGGCGACC TGCTGAAGGAGAAGTACGACAGCGCGGCCGCCATGCGGATCAGTCGCAAGGGCAAGCTGGAGCTCGTGAACAACCGCTT CAACATGCCCACGCAGGAGGACCTGGTCTACGTCGACCCCAGCCCGGACTATTGCCTGCGCAATGAGACCACCGGCTCG CTGGGCACGCAGGGCCGCCTGTGCAACAAGACCTCAGAGGGCATGGATGGGTGTGAGCTGATGTGCTGTGGACGGGGCT ACGACCAATTCAAGAGCGTTCAGGTGGAGCGTTGCCACTGCAAGTT`
Citation	Sienknecht UJ, Fekete DM. Mapping of Wnt, frizzled, and Wnt inhibitor gene expression domains in the avian otic primordium. J Comp Neurol. 2009 Dec 20;517(6):751-64.
Copyright	Copyright © (2002 Wiley-Liss); This material is used by permission of Wiley-Liss, Inc., a subsidiary of John Wiley & Sons, Inc.
Comments	NCBI Acc# given in paper.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

1-3

stage 1

stage 25

Ear/Otic Placode

Entry 14

GEISHA Id	Wnt-5b.Cauthen.2001	Data Source	Publication
Complete cDNA Template Probe	show CACCATGACGGGGCCGAGGCTGGCGCTCGCCGCCGCGCTTCTCTGCAGCTGCACCTCGCCGGTGGCCGACGCCAACTCC TGGTGGTCTTTGGCCATGAACCCCATCCAGAGGCCGGAGATGTACATCATCGGCGCGCAGCCCGTGTGCAGCCAGCTGC CGGGGCTGTCCCCGGGGCAGCGCAAGCTGTGCCAGCTCTACCAGGAGCACATGGTGTTCATCGGCGAAGGGGCCCGCAG TGCCATCAAGGAGTGCCAGTACCAGTTCCGGCAGCGCAGGTGGAACTGCAGCACGGTGGACAACACGTCCGTCTTCGGC CGGGTCATGAAAATAGGTAGCCGAGAGACCGCTTTCACCTACGCCGTCAGCGCCGCCGGGGTGGTGAACGCCATCAGCC GTGCCTGCCGTGAGGGAGAGCTGTCCAGCTGTGGCTGCAGCCGCACGGCCCGGCCCAAGGACTTGCCCCGAGACTGGCT GTGGGGCGGCTGCGGGGATAACGTGGAGTACGGGTACCGTTTCGCCAAGGAGTTTGTGGATGCCAAGGAGAGGGAGAAG AACTACGTGAGAGGCTCCGAGGAGCAGGCTCGCATGCTGATGAACCTGCAGAACAACGAGGCTGGGCGCAGGGCCGTGT ACAAGCTGGCGGACGTGGCCTGCAAGTGCCACGGCGTGTCGGGCTCCTGCAGCCTCAAGACGTGCTGGCTGCAGCTGGC AGACTTCCGCAAGGTGGGCGACCTGCTGAAGGAGAAGTACGACAGCGCGGCCGCCATGCGGATCAGTCGCAAGGGCAAG CTGGAGCTCGTGAACAACCGCTTCAACATGCCCACGCAGGAGGACCTGGTCTACGTCGACCCCAGCCCGGACTATTGCC TGCGCAATGAGACCACCGGCTCGCTGGGCACGCAGGGCCGCCTGTGCAACAAGACCTCAGAGGGCATGGATGGGTGTGA GCTGATGTGCTGTGGACGGGGCTACGACCAATTCAAGAGCGTTCAGGTGGAGCGTTGCCACTGCAAGTTCCATTGGTGC TGTTACGTCAAGTGTAAAAAGTGCACAGAGATCGTTGACCAGTACGTCTGTAAATGAAAAGAGCC
Citation	Cauthen CA, Berdougo E, Sandler J, Burrus LW. Comparative analysis of the expression patterns of Wnts and Frizzleds during early myogenesis in chick embryos. Mech Dev. 2001 Jun;104(1-2):133-8.
Copyright	Copyright © 2001 Elsevier Science Ireland Ltd.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001037269.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 10

Lateral Plate Mesoderm
Neural Plate/Tube
Notochord
Somites

31-44

stage 44

Entry 15

GEISHA Id	Wnt5b.Loganathan.2005	Data Source	Publication
Complete cDNA Template Probe	show CACCATGACGGGGCCGAGGCTGGCGCTCGCCGCCGCGCTTCTCTGCAGCTGCACCTCGCCGGTGGCCGACGCCAACTCC TGGTGGTCTTTGGCCATGAACCCCATCCAGAGGCCGGAGATGTACATCATCGGCGCGCAGCCCGTGTGCAGCCAGCTGC CGGGGCTGTCCCCGGGGCAGCGCAAGCTGTGCCAGCTCTACCAGGAGCACATGGTGTTCATCGGCGAAGGGGCCCGCAG TGCCATCAAGGAGTGCCAGTACCAGTTCCGGCAGCGCAGGTGGAACTGCAGCACGGTGGACAACACGTCCGTCTTCGGC CGGGTCATGAAAATAGGTAGCCGAGAGACCGCTTTCACCTACGCCGTCAGCGCCGCCGGGGTGGTGAACGCCATCAGCC GTGCCTGCCGTGAGGGAGAGCTGTCCAGCTGTGGCTGCAGCCGCACGGCCCGGCCCAAGGACTTGCCCCGAGACTGGCT GTGGGGCGGCTGCGGGGATAACGTGGAGTACGGGTACCGTTTCGCCAAGGAGTTTGTGGATGCCAAGGAGAGGGAGAAG AACTACGTGAGAGGCTCCGAGGAGCAGGCTCGCATGCTGATGAACCTGCAGAACAACGAGGCTGGGCGCAGGGCCGTGT ACAAGCTGGCGGACGTGGCCTGCAAGTGCCACGGCGTGTCGGGCTCCTGCAGCCTCAAGACGTGCTGGCTGCAGCTGGC AGACTTCCGCAAGGTGGGCGACCTGCTGAAGGAGAAGTACGACAGCGCGGCCGCCATGCGGATCAGTCGCAAGGGCAAG CTGGAGCTCGTGAACAACCGCTTCAACATGCCCACGCAGGAGGACCTGGTCTACGTCGACCCCAGCCCGGACTATTGCC TGCGCAATGAGACCACCGGCTCGCTGGGCACGCAGGGCCGCCTGTGCAACAAGACCTCAGAGGGCATGGATGGGTGTGA GCTGATGTGCTGTGGACGGGGCTACGACCAATTCAAGAGCGTTCAGGTGGAGCGTTGCCACTGCAAGTTCCATTGGTGC TGTTACGTCAAGTGTAAAAAGTGCACAGAGATCGTTGACCAGTACGTCTGTAAATGAAAAGAGCC
Citation	Loganathan PG, Nimmagadda S, Huang R, Scaal M, Christ B. Comparative analysis of the expression patterns of Wnts during chick limb development. Histochem Cell Biol. 2005 Feb;123(2):195-201.
Copyright	Copyright © Springer-Verlag 2005
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_001037269)