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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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JADE3
jade family PHD finger 3

Gene

Official Symbol	JADE3
Official Full Name	jade family PHD finger 3
CGNC ID	12542
also known as	PHF16, protein Jade-3\|PHD finger protein 16
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_416870
Polypeptide	XP_416870
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.18002

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	9767	ENSG00000102221		MIM:300618
Mouse	382207	ENSMUSG00000037315	All phenotypic alleles (2):Targeted, other(2)	MGI:2148019
Xenopus	779948			978172
Zebrafish	322209	ENSDARG00000019614	ZDB-GENE-030131-928	ZFIN:ZDB-GENE-030131-928

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	418674
Ensembl Gene
KEGG	gga:418674

Entry 1

GEISHA Id	JADE3.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5’-TCACGGATGCGTCAGGATG-3’
Reverse cDNA Template Primer	5’-AATTAACCCTCACTAAAGGTTTCGGACACAGGAGGCAC-3’	cDNA Template Length	802
Complete cDNA Template Probe	show TCACGGATGCGTCAGGATGAAACGCCACAGGCATCTGAGCACCAGTGACAGTTCAGACAATGAGAGTCCTTCCACTTCC TTTTCTTCTTGTGCTAAATACAGGAGCAAGTCAAAAACACCAGCAAATGAACAAAAGAAACCTGCTGAGGTGTTCCGCA AGGATCTCATTAGTGCCATGAAACTACCGGATTCTCACCATGTTAACCCCGATGAATATTATGTCTTTGCGGACACGTG GAAACAGGAATGGGAGAAAGGAGTCCAAGTTCCAGCCAGTCCAGAAACGATTCCGCAGCCATCTCTCAGGGTTGTCGCA GAAAAGGTGAAAGAAGTACTGTATACACGACCCAGGAAATATATCCACTGTTCCAGCCAAGAGCCTACAGAACCAGGTT ACATCAACATTTTGGAATTGGCAGAATCTGTGTGTCGCTATGACTTGGATGATATGGACATATTTTGGCTCCAGGAACT AAATGAAGAGCTTACTGAAATGGGATGCGGGCCCCTGGATGAAAACACAATGGAAAAAACTATTGAAGTGCTGGAGCGA CACTGTCATGAGAATATGAATCATGCTATTGAGACCGAAGAAGGTCTGGGTATAGAGTATGATGAAGATGTCATCTGTG ATGTGTGCCGGTCTCCTGACAGTGAAGATGGGAACGATATGGTGTTCTGTGACAAGTGTAATATCTGTGTCCATCAGGC ATGCTATGGAATCTTGAAAGTCCCCGAAGGGAGCTGGCTGTGCCGCACCTGTGTTCTGGGGATACATCCTCAGTGCCTC CTGTGTCCGAAA

Stage

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Comments (click to highlight)

7-12

stage 11

Unlabeled

13-18

stage 18

Foregut
Head Mesenchyme
Leg Mesenchyme
Neural Plate/Tube
Pharyngeal Arches and Clefts
Somites
Ventricles
Wing Mesenchyme

19-24

stage 19

stage 23

Head Mesenchyme
Leg Mesenchyme
Lung
Mesonephros
Pharyngeal Arches and Clefts
Widespread Expression
Wing Mesenchyme

stage 25

Head Mesenchyme
Leg Mesenchyme
Lung
Mesonephros
Outflow Tract
Pharyngeal Arches and Clefts
Sclerotome
Wing Mesenchyme

Entry 2

GEISHA Id	PHF16.Brugmann.2010	Data Source	Publication
Complete cDNA Template Probe	show ATGCCGCCCATCGCGCCCGTTTCTGTCGAACGCCGTTCCGGCGGGGAGCTCCGCCGCGGGTCGGACGGCGACCGTCACC AGCCGGCTGAGCGCTGCGCTAAGGTGTTCCGCAAGGATCTCATTAGTGCCATGAAACTACCGGATTCTCACCATGTTAA CCCCGATGAATATTATGTCTTTGCGGACACGTGGAAACAGGAATGGGAGAAAGGAGTCCAAGTTCCAGCCAGTCCAGAA ACGATTCCGCAGCCATCTCTCAGGGTTGTCGCAGAAAAGGTGAAAGAAGTACTGTATACACGACCCAGGAAATATATCC ACTGTTCCAGCCAAGAGCCTACAGAACCAGGTTACATCAACATTTTGGAATTGGCAGAATCTGTGTGTCGCTATGACTT GGATGATATGGACATATTTTGGCTCCAGGAACTAAATGAAGAGCTTACTGAAATGGGATGCGGGCCCCTGGATGAAAAC ACAATGGAAAAAACTATTGAAGTGCTGGAGAGACACTGTCATGAGAATATGAATCATGCTATTGAGACCGAAGAAGGTC TGGGTATAGAGTATGATGAAGATGTCATCTGTGATGTGTGCCGGTCTCCTGACAGTGAAGATGGGAACGATATGGTGTT CTGTGACAAGTGTAATATCTGCGTCCATCAGGCATGCTATGGAATCTTGAAAGTCCCCGAAGGGAGCTGGCTGTGCCGC ACCTGTGTTCTGGGGATACATCCTCAGTGCCTCCTGTGTCCGAAACGAGGAGGTGCCATGAAAGCCACCAGGACAGGGA CCAAGTGGGCACATGTGAGCTGTGCTCTCTGGATTCCAGAGGTTAGTATTGCTTGCCCAGAAAGGATGGAGCCGATCAC GAAGGTTTCTCACATTCCACCAAGTCGATGGGCTTTAGTGTGTAGTTTATGCAAACTGAAAACCGGTGCTTGCATTCAG TGTTCGGTGAAAAGCTGCATCACTGCCTTTCACGTCACCTGTGCCTTTGAGCATAGCTTAGAGATGAAGACTATCCTGG ATGATGGGGATGAGGTCAAATTCAAGTCATACTGTCTAAAGCACAGCAAGAACAAACAGAATTCCCTGCCTGATGTTGA TGAACACCCCAAAAGCATATCAGATCAGAAGCAAACTGAGAGTGAGAAAACCAGTTTGCGAGCCCAGAAACTCCGAGAG CTGGAAGAAGAGTTTTACTCACTGGTTAAAGTGGAGGATGTTGCAGCAGAACTGGGCCTCCCTAAACTTGCTGTAGACT TCATCTACAATTACTGGAAACTAAAGCGGAAAAGTAATTTTAACAAACCTTTGTTTCCTCCCAAGGAGGATGAAGAAAA TGGCTTGGTGCAGCCAAAAGAAGATAGCATTCATACTCGCATGAGGATGTTCATGCATTTGAGGCAGGACCTAGAGAGG GTAAGGAATCTCTGCTACATGGTAAGCAGGAGAGAGAAACTGAAGCTGTCTCACAGTAAAGTACATGAACAGGTCTTCA ATTTGCAAGTTCAGCTCATTAATCAGGAAATTGCTGCAGGCCATACCCTGCCAAGTGCACTAGAGAACACACTGTTCTA CCCACCTCCCAGGATCACCCTGAAGTTAAAAATGCCCAAATCAGCACTAGGAGATTGCAAAAATAACTCACTGAAGCCT GGCAACAGACCGCTCTCTCCTGACAACAACAGCACTGTTTACAGCAAAAGGAGCGTGCCGATGTCAAAGGAGCCATTTG AAATCAAAGCCAAATCTTACTCCAGGTATCAACACGACACCAGAAGTAATGGGTTGCTTGTGACAGGAGGGATCGGCAA GCCTCGTGGCGAGGCAAAGGACTCCGGTCTTGTGCAGGTGCCGGAGTTCCACCGGGGCCAGCCATCAGGGAAGCCCCTG GCACTGCAGGCTGCTCTGCACGGACAGTCCTCCATTGGGAATGGGCGGCTGCAGCAGGATGGCTCACGGCTGGTGGCCA AGTCCAATGGGCTGATGGGCAGGACTGGTGATGTGAGCCAGAGGGACAGCTCCAGCCAGACGCCCTTTGAACAGGAGTC TGTGCTGACGGCTCATTTGGCCAGCCAGAGTGGTTTTAGAAAATCCACCATTGAGCACTTCAGCCGGTCCTTTAAGGAG GCCACCAACAGTCTGGTGAGGACAACGGAAGATTTGAGGTGCTGTGAGAAGCCAACGAGAAGGCTTGCAGCAAAAGAAC GCTTGTGGAGCAAGCAGACGCTTGAAGGGGCTCCGTACCAGGACAATGACGGGTACTGTCCCGACTTGGAGCTGAGTGA CTCTGAAGCAGAAAGTGATGAAAATAAAGAGCAAATGAGGTTAAGACGAAGTAGCTCGGAGAGAGAAAGTCCGAGTAAG GACTTTGGAAGAGAGTGTCACAATAGAAACAAAAAGAATATGATTTCTCACGGTTCGGTACAAAGGTGA
Citation	S.A. Brugmann, K.E. Powder, N.M. Young, L.H. Goodnough, S.M. Hahn, A.W. James, J.A. Helms, M. Lovett. Comparative gene expression analysis of avian embryonic facial structures reveals new candidates for human craniofacial disorders. Hum Mol Genet. 2010 March 1; 19(5): 920930.
Copyright	Copyright © The Author 2009. Published by Oxford University Press. All rights reserved.