Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

KLF5
Kruppel like factor 5

Gene

Official Symbol	KLF5
Official Full Name	Kruppel like factor 5
CGNC ID	12707
also known as	Krueppel-like factor 5\|Kruppel-like factor 5 (intestinal), Krueppel-like factor 5, Transcription factor BTEB2, BTE-binding protein 2, Intestinal-enriched krueppel-like factor, Colon krueppel-like factor, Basic transcription element-binding protein 2, GC box-binding protein 2
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	XM_417013
Polypeptide	XP_417013

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	688	ENSG00000102554		MIM:602903
Mouse	12224	ENSMUSG00000005148	All phenotypic alleles (7):Targeted, knock-out(2) Targeted, other(4) Gene trapped(1)	MGI:1338056
Xenopus	100489339, 735138			490586
Zebrafish	100006043	ENSDARG00000015506	ZDB-GENE-080424-4, ZDB-GENE-090312-167	ZFIN:ZDB-GENE-080424-4, ZFIN:ZDB-GENE-090312-167

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	418818
Ensembl Gene
KEGG	gga:418818

Entry 1

GEISHA Id	ChEST429a18	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show TCGACATGCCCAGTGCGGCTCCTCAGGCGGCCGTCATGGACTCCCTTAGCAGTGTCTCCATGCCGTCGGCCATGTCGGG CCTCAACACCCTCTCCCCGGCTGTCCCACAGACTGCAATGAAACAGTTCCAGGGCATTCCCCCATGCTCCTACACGATG CCAAACCAGTTCCTTCAGCAGCAGGCCACCTACTTCCCCCCTTCACCCCCCAGCTCAGAGCCTGGCAGTCCAGACAGAC AAGCAGAGATGCTACAGAATTTAACCCCTCCTCCATCGTACGCTGCCACTATAGCTTCCAAGCTGGCAATTCACAACCC GAATTTACCTGCAACTCTGCCAATAACTCCCCAGAACATACAGCCAGTCAGATACAACAGGAGAAGTAACCCAGATTTG GAGAAAAGACGCATCCACTACTGTGACTACCCCGGCTGCACAAAAGTGTATACTAAGTCTTCTCACTTAAAAGCGCACC TGAGAACTCACACGGGTGAAAAACCATACAAGTGCACGTGGGAGGGCTGCGACTGGCGATTTGCGCGCTCGGATGAATT AACGCGCCATTACAGGAAGCACACCGGGGCTAAACCCTTCCAGTGCGCCGTGTGCAACCGCAGCTTCTCCCGCTCCGAT CACCTGGCTCTGCACATGAAGAGGCATCAGAACTGAAAGCCAGAGTTGTTGCCGAGGCTGTTCTGTATCTATGCAATTT CCTAATGACTCTCAACCTACAACTAAAATTAGTTTAATTTTTTGAGGATGGATTATCCATTTAAAAGAAATCTCGAAAC TGGAAAATGTATATTTTGTATATTTATGCAGAAAAAGGGAAGACACTGTATCACAATACAGAGTGTTCAAGTCATTTGT TTGCT

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Area Opaca
Epiblast
Primitive Streak

4-6

stage 4

stage 5

stage 6

Area Opaca
Area Pellucida
Early Mesoderm
Epiblast
Headfold
Hensen's Node
Primitive Streak

7-12

stage 7

stage 8

stage 9

stage 10

stage 11

Amnion
Area Opaca
Early Mesoderm
Epiblast
Extraembryonic
Forebrain
Head Mesenchyme
Primitive Streak
Surface Ectoderm
Tail
Trunk Mesenchyme
Yolk Sack or Stalk

anterior neuropore
nuc

13-18

stage 14

stage 17

stage 18

Amnion
Surface Ectoderm

19-24

stage 20

stage 22

stage 23

Amnion
Somites
Surface Ectoderm

stage 25

Amnion
Surface Ectoderm

head

Entry 2

GEISHA Id	KLF5.Antin.2010	Data Source	Publication
Complete cDNA Template Probe	show TCGACATGCCCAGTGCGGCTCCTCAGGCGGCCGTCATGGACTCCCTTAGCAGTGTCTCCATGCCGTCGGCCATGTCGGG CCTCAACACCCTCTCCCCGGCTGTCCCACAGACTGCAATGAAACAGTTCCAGGGCATTCCCCCATGCTCCTACACGATG CCAAACCAGTTCCTTCAGCAGCAGGCCACCTACTTCCCCCCTTCGCCCCCCAGCTCAGAGCCTGGCAGTCCAGACAGAC AAGCAGAGATGCTACAGAATTTAACCCCTCCTCCATCGTACGCTGCCACTATAGCTTCCAAGCTGGCAATTCACAACCC GAATTTACCTGCAACTCTGCCAATAACTCCCCAGAACATACAGCCAGTCAGATACAACAGGAGAAGTAACCCAGATTTG GAGAAAAGACGCATCCACTACTGTGACTACCCCGGCTGCACAAAAGTGTATACTAAGTCTTCTCACTTAAAAGCGCACC TGAGAACTCACACGGGTGAAAAACCATACAAGTGCACGTGGGAGGGCTGCGACTGGCGATTTGCGCGCTCGGATGAATT AACGCGCCATTACAGGAAGCACACCGGGGCTAAACCCTTCCAGTGCGCCGTGTGCAACCGCAGCTTCTCCCGCTCCGAT CACCTGGCTCTGCACATGAAGAGGCATCAGAACTGAAAGCCAGAGTTGTTGCCGAGGCTGTTCTGTATCTATGCAATTT CCCTAATTGACTCTTCAACCTACAACTAAAAATTAGTTTACTTCTCTTGAGGATGGATTATCCATTTTACAACGAAATC TCGAAAACTGCAACCATGTCTATTCTGGGTCTACTTTATGCCGCACCACAGGGACGACTCTGTTTCCCAATACCCGAGT GTTCCCGTCATTTGTGTGCTCCCCTGGCTGTATAATGGCTTAGTCAGCAGGTTTCACCTCTTACCAGTTTTTTGTCCTG CCCATGGCGCGTTCCCATCTTTTTCTCC
Citation	Antin PB, Pier M, Sesepasara T, Yatskievych TA, Darnell DK. Embryonic Expression of the Chicken Krüppel-like (KLF) Transcription Factor Gene Family. Dev Dyn. 2010 Jun;239(6):1879-87.
Copyright	Copyright © 2010 John Wiley & Sons, Inc. All Rights Reserved.
Comments	Probes were prepared using the entire cDNA insert in each EST clone. KLF 5 was made using clone ChEST429a18, which is represented in genbank by BU262693.1.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

Epiblast

7-12

stage 8

stage 9

stage 10

stage 11

Dermomyotome
Lateral Plate Mesoderm
Somatic Mesoderm
Surface Ectoderm

13-18

stage 14

Dermomyotome
Extraembryonic
Surface Ectoderm

19-23

stage 23

Allantois
Amnion
Myotome
Pharyngeal Arches and Clefts
Surface Ectoderm

Entry 3

GEISHA Id	KLF5.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show AGACACCCGTCGCCAGGTACAGGCGGAGGCATTGACGACGCCCGAGTGGATGCGCGGCCGGGCCGGGGCTCGTGGCGAG TGAGAGCCGAGCAGCCGCCGCCCAGCCCAGCGCAGCCGCCCGCGGGCAGAGCCCAGCGCCGGGGCGGGCAGCCCGCCCG TGCCGCACCGCAGCGCCCTGCCCATGGCCACCCGGGTGCTGACCATGAGCGCCCGCCTGGCTCCCATGCCCGAGGAGCC GGTGTTCGCGCAGCTCAAGCCCGTGCTGGGGGCCAGGGAAGCGCCCGTCTTCCCCGGGGAGGACCTGAAACAGCAGCCG CCGCCGCAACCGCAACAGCAGCACCCGGGGAGCGGCGGAGGGGGCGGCGGCGCGGCCCTGCCGGGCGAGGAGATGGTGC AGACAAGGTGTGAAATGGAGAAATATCTGGCACCGCAGCTTCCGCCCGTCCCAGTCATCTCTGAGCATAAGAAGTACAG AAGAGACAGTGCCTCAGTCGTAGACCAGTTCTTCACCGACAGCGAAGGCTTGCCTTACAGCATCAACATGAACGTCTTC CTCCCTGATATCAGCCACCTGAGAACCGGCCTGTACAAATCCCAGCGGCCCTGTGTCCCCCACATCAAGACCGAGCCCG TCACCATCTTCAGTCACCAGAGTGAAACCGCTGCCCCCGCCCCTGCCCCTACCCAGGCCCTCCCTGAGTTCACCAGCAT TTTCAGCTCTCACCAGACCCCCGATGTGAACAACATTTTCATCAAGCAGGAGCTCCCGACCCCTGACGTCCACCTCTCT GTCACGCCCCAGCAGGGCCAGCTTTACCAGCTTCTGAGCTCGCCGGACCTCGACATGCCCAGTGCGGCTCCTCAGGCGG CCGTCATGGACTCCCTTAGCAGTGTCTCCATGCCGTCGGCCATGTCGGGCCTCAACACCCTCTCCCCGGCTGTCCCACA GACTGCAATGAAACAGTTCCAGGGCATTCCCCCATGCTCCTACACAATGCCAAACCAGTTTCTTCAGCAGCAGGCCACC TACTTCCCCCCTTCGCCCCCCAGCTCAGAGCCTGGCAGTCCAGACAGACAAGCAGAGATGCTACAGAATTTAACCCCTC CTCCATCGTACGCTGCCACTATAGCTTCCAAGCTGGCAATTCACAACCCAAATTTACCTGCAACTCTGCCAATAACTCC TCAGAACATACAGCCAGTCAGATACAACAGGAGAAGTAACCCAGATTTGGAGAAAAGACGCATCCACTACTGTGACTAC CCCGGCTGCACAAAAGTGTATACTAAGTCTTCTCACTTAAAAGCGCACCTGAGAACTCACACGGGTGAAAAACCGTACA AGTGCACGTGGGAGGGCTGCGACTGGCGATTTGCGCGCTCGGATGAATTAACGCGCCATTACAGGAAGCACACCGGGGC TAAACCCTTCCAGTGCGCCGTGTGCAACCGCAGCTTCTCCCGCTCCGATCACCTGGCTCTGCACATGAAGAGGCATCAG AACTGAAAGCCAGAGTTGTTGCCGAGGCTGTTCTGTATCTATGCAATTTCCTAATGACTCTCAACCTACAACTAAAATT AGTTTAATTTTTTGAGGATGGATTATCCATTTAAAAGAAATCTCGAAACTGGAAAATGTATATTTTGTATATTTATGCA GAAAAAGGGAAGACACTGTATCACAATACCAGAGTGTTCAAGTCATTTGTTTGCTCACATGGTGTATATGGCTTTAGTC AGCAGGTTTCATCTCTTTACAAGTATTATGTCTTGACACATGGCAGCGTTACACATACTTTTTTTCCTCTCTAGGTGTT TTGACCAAAGCACTGTCATTATTGTGACAATGTTTAGTAAAAAAATTAATGAGAGACTGCAGATGAATGGACACAGTGG AAAAGCCATGCATTGTAATCTGTCAGGGTTTTACTGAACTTGTTTAGTACTTGTGCTTTTTTTTAAATGTTAAGTCGTT CTGTGGAGATAAAACACGTAGAAAAATACATAAACAGCCATAGAACAAAACATTTTGTTCTGTATGTTGCATGTTTGCT ATGACAAAGATTTTGTAAATATGCAAATCAGCTTTTTAGGGTTAAAACAAAAGTTTTCTAAGAATTATCTGGGAAAAAA AAAAAAAAAACAGTTGTTCTACATTTGTTAACACGGCACATTTACGCAAAAAGTTACTTAAATACCTCTCAAAACAGTA CCAACTTAGCTTCATTTCTCTTAAGAGAAATGAGCAAGGCATTCAAATGTTTTGTACCTGTTAACTCAGATGGTGTGCA CTGAATATTCAAAGCAGGATTTGGTTTTCAAATTGCTTAAAAGGGTAAAACATTTAAAGCGAACTGGAAAGTAAATGTT GGAAGCTTAAAGGGGGGGATAGTTACAGTATACAGAATGTTAAACCTCTTAGTATAAGCTAAACTTAGTATCACTTTAA AAAGAAGGATTTAGGATGCAATTTTCATATACGGACATGTTAAGCTGGTTCAGCACCAGTATGATCTGTTTTCATGTGG ATATTGCATGTAATTTACTAGAAGGTAAAGGATACAGTAATTTTATTTAAAATTACAGTGCAGTTTAGTTAATCCACTG TTCAAATGGATACACACGGGAGAAAATTAACTGCTGACAAAGGTAGCTGAAACTCCACTGAAGTCAGGTGAAGTGGTGC CCTTTTATGCTAACAGTGACTTTGATCCACAGTGTTCAGCCTTGAAACATTAAGTGAAGGGCCAAAGATGAGGTTAGAC CATGCAGGATTTGGCCAGGCAACAGGAGAAAACGAAACAAACCAAGTAAAAGTGTCTGGAGTTCGCAAGCTGTAATATT AAGCTGTCAACCAAAGGGTAGAATAAACAATCAAAATACCAAAAAAGGGTCTCACAGGAAAATCTAGCGTTGTTAAAAC TGTTGTTTGTCTTTATTTATTTGTGGTATACAATAGACTTTTTTTTAAGACAATTTTACATATACTTGATAAATTATAG TTTTGTTTGTTATAGTTAGAAATGTTGCTCTTAATGTAAATAGTTGACAAATGATGTAAATAATTTTGTAAGGCTTCAA ATGTTTATACATGGAAACACATGCATAAATTGGTTGCTGTTTTGCTTCTTTTGCCTCCCCCCTACCTTATTTTTGTATT GTGGTATTTCCTATGCAAATGTTGGAGCAAACAGCTGTATAGTTGTAGAATGTTTTGAGAGAGAATGAAATGGTTTATA TATAAAAGACTTTTTTTTTTTTTGCAAAATAAAACAAAGTGCCTAATGTG
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_417013).