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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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HNF4A
hepatocyte nuclear factor 4 alpha

The human orthologue of this gene is associated
with the following human diseases:

Gene

Official Symbol	HNF4A
Official Full Name	hepatocyte nuclear factor 4 alpha
CGNC ID	50941
also known as	HNF4alpha, hepatocyte nuclear factor 4-alpha\|hepatic nuclear factor 4alpha\|nuclear receptor, HNF4Alpha
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_001030855
Polypeptide	NP_001026026

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	44544			FBgn0004914
Human	3172	ENSG00000101076	MIM:125853	MIM:600281
Mouse	15378	ENSMUSG00000017950	All phenotypic alleles (14):Targeted, knock-out(2) Targeted, other(12)	MGI:109128
Xenopus	100492541, 379762			482418
Zebrafish	322358	ENSDARG00000021494	ZDB-GENE-030131-1077	ZFIN:ZDB-GENE-030131-1077

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	419198
Ensembl Gene	ENSGALG00000004285
KEGG	gga:419198

Entry 1

GEISHA Id	HNF4A.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5’-GATTGCCAACATCGCCGAC-3’
Reverse cDNA Template Primer	5’-AATTAACCCTCACTAAAGGTTGCCACGGTTGCAATGG-3’	cDNA Template Length	800
Complete cDNA Template Probe	show GATTGCCAACATCGCCGACGTGTGCGAGTCCATGAAGCAGCAGCTGCTGGTGCTGGTGGAGTGGGCCAAGTACATCCCT GCGTTCTGCGAGCTGCCCCTGGACGACCAGGTGGCACTGCTGCGGGCACATGCAGGTGAACATCTGTTACTGGGAGTTG CCAAGAGGTCCATGGTGTTCAAGGATGTCTTGCTGCTAGGGAACGACCACATCGTCCCTCGGAACTGCCCCGAGCTGGT AGAGGTGCGCGTGGCCATCCGCATCCTGGATGAGCTGGTCCTCCCCTTCCAGGAGCTGCAGATAGACGACAATGAATAC GCCTGCTTGAAAGCCATCATCTTCTTCGACCCAGATGCCAAAGGACTGAGCGATCCCTCCAAGATCAAGCGGATGCGGT ACCAGGTGCAGGTCAGCCTGGAGGACTACATCAATGACAGGCAGTACGACTCGCGGGGCCGCTTCGGGGAGCTGCTGCT GCTGCTGCCTGTGCTGCAGAGCATCACCTGGCAGATGATAGAGCAGATCCAGTTTGTCAAGCTCTTCGGCATGGCTAAG ATCGACAACCTGCTGCAGGAGATGCTGCTGGGAGGTTCATCAAGTGAAACGCCACATGCTCACCACCCCTTGCATCCTC ATCTGATCCAGGAGAACCTGGGAACAAACGTCATTGTGGCCAACACAATGCCTCCTCAGATGCACAACGGGCAGATGTC TACTCCAGAAACTCCTCAGCCATCTCCTCCTGCAGGTTCAGGGCCGGAGCAGTACAAACTGCTGCCCGGAGCCATTGCA ACCGTGGCAA

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

Extraembryonic Mesoderm
Unlabeled Embryonic

7-12

stage 7

stage 10

Extraembryonic Mesoderm
Unlabeled Embryonic

13-18

stage 18

Unlabeled

19-24

stage 19

stage 23

stage 24

Foregut
Liver
Nephric Ducts
Stomach
Unlabeled

25-27

stage 27

Duodenum
Esophagus
Head Mesenchyme
Liver
Nephric Ducts
Nephric Tubules
Stomach

Entry 2

GEISHA Id	Hnf-4alpha.Yanai.2005	Data Source	Publication
Complete cDNA Template Probe	show GGCACATGCAGGTGAACATCTGTTACTGGGAGTTGCCAAGAGGTCCATGGTGTTCAAGGATGTCTTGCTGCTAGGGAAC GACCACATCGTCCCTCGGAACTGCCCCGAGCTGGTAGAGGTGAGCCGCGTGGCCATCCGCATCCTGGATGAGCTGGTCC TCCCCTTCCAGGAGCTGCAGATAGACGACAATGAATATGCCTGCTTGAAAGCCATCATCTTCTTCGACCCAGATGCCAA AGGACTGAGCGATCCCTCCAAGATCAAGCGGATGCGGTACCAGGTGCAGGTCAGCCTGGAGGACTACATCAATGATAGG CAGTACGACTCGCGGGGCCGCTTCGGGGAGCTGCTGCTGCTGCTGCCTGTGCTGCAGAGCATCACCTGGCAGATGATAG AGCAGATCCAGTTTGTCAAGCTCTTCGGCATGGCTAAGATCGACAACCTGCTGCAGGAGATGCTGCTGGGAGGTTCATC AAGTGAAACGCCACATGCTCACCA
Citation	Yanai M, Tatsumi N, Endo F, Yokouchi Y. Analysis of gene expression patterns in the developing chick liver. Dev Dyn. 2005 Jul;233(3):1116-22.
Copyright	Wiley-Liss, Inc. 2005