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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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KDM1A
lysine demethylase 1A

Gene

Official Symbol	KDM1A
Official Full Name	lysine demethylase 1A
CGNC ID	547
also known as	AOF2, lysine-specific histone demethylase 1A\|amine oxidase (flavin containing) domain 2\|lysine (K)-specific demethylase 1A
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	XM_417719
Polypeptide	XP_417719

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	40217			FBgn0260397
Human	23028	ENSG00000004487		MIM:609132
Mouse	99982	ENSMUSG00000036940	All phenotypic alleles (7):Targeted, knock-out(3) Targeted, other(3) Gene trapped(1)	MGI:1196256
Xenopus	100216250, 100127344			5816926
Zebrafish	558450	ENSDARG00000060679	ZDB-GENE-030131-7828	ZFIN:ZDB-GENE-030131-7828

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	419571
Ensembl Gene	ENSGALG00000000840
KEGG	gga:419571

Entry 1

GEISHA Id	KDM1A.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5’-TCGTCTGTTGGAAGCCACC-3’
Reverse cDNA Template Primer	5’-AATTAACCCTCACTAAAGGACAGTGGCAGGGTAGTTGC-3’	cDNA Template Length	1284
Complete cDNA Template Probe	show TCGTCTGTTGGAAGCCACCTCTTATCTCAGTCATCAGTTGGATTTTAATGTTCTCAATAATAAGCCTGTCTCCCTAGGT CAAGCTCTGGAGGTTGTCATACAATTGCAGGAGAAACACGTGAAGGATGAGCAGATTGAACACTGGAAAAAAATTGTGA AAACACAGGAGGAATTGAAAGATCTTCTTAACAAGATGGTGAATTTGAAAGAGAAGATTAAAGAGCTCCATCAGCAGTA TAAGGAAGCATCAGAAGTGAAGCCACCTCGGGATATTACAGCAGAGTTCCTTGTAAAGAGTAAACACAGAGATCTGACT GCACTTTGCAAGGAGTACGATGAATTGGCAGAAACACAAGGAAAGCTGGAAGAGAAGCTGCAGGAACTTGAAGCCAATC CACCAAGTGATGTTTATCTGTCTTCAAGGGATAGGCAAATACTTGACTGGCATTTTGCAAACCTGGAATTTGCTAATGC TACACCTCTCTCTACGCTTTCACTGAAGCACTGGGACCAGGACGATGACTTTGAATTCACAGGCAGCCACCTGACTGTG AGGAATGGGTATTCCTGCGTGCCTGTGGCCTTGGCAGAGGGGTTGGATATAAAGCTGAACACAGCAGTTCGGCAGGTTC GCTATACAGCTTCAGGCTGTGAAGTGATTGCTGTAAACACTCGTTCTACCAGCCAGACGTTCATTTATAAATGCGATGC TGTGCTGTGTACCCTTCCCTTGGGAGTCCTGAAGCAGCAGCCTCCAGCAGTACAGTTTGTGCCACCTCTCCCTGAGTGG AAAACTTCAGCAGTGCAGCGTATGGGATTCGGCAACCTTAACAAGGTTGTGTTGTGTTTCGATCGTGTCTTCTGGGATC CAAGTGTCAATTTGTTTGGTCACGTTGGTAGCACTACTGCAAGCAGAGGGGAGCTTTTCTTGTTTTGGAACCTGTACAA AGCACCCATCTTGCTGGCCTTGGTAGCAGGAGAAGCAGCAGGAATCATGGAGAATATCAGTGATGATGTCATTGTTGGA CGATGTCTCGCCATCCTCAAAGGCATATTTGGTAGCAGTGCTGTGCCACAGCCCAAAGAGACTGTGGTCTCCCGTTGGC GTGCTGATCCATGGGCCCGGGGCTCATACTCCTATGTAGCAGCTGGATCTTCTGGAAATGACTATGACTTGATGGCTCA ACCAATTACTCCAGGGCCAGCCATTCCAGGTGCTCCACAGCCCATTCCTCGCCTGTTTTTTGCAGGAGAGCACACAATT CGCAACTACCCTGCCACTGT

Stage

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Comments (click to highlight)

4-6

stage 4

stage 5

Epiblast
Primitive Streak

7-12

stage 8

stage 10

stage 11

Anterior Intestinal Portal
Atria
Blood Islands
Extraembryonic Mesoderm
Forebrain
Head Mesenchyme
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Primitive Streak
Sinus Venosus
Somites
Ventricles
extraembryonic mesoderm

13-18

stage 18

Allantois
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Liver
Midbrain
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Wing Mesenchyme

19-24

stage 19

stage 22

Widespread Expression

stage 25

Widespread Expression

Entry 2

GEISHA Id	Lsd1-KDM1A.Zwane.2015	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GCTTTCAGGAGCATTTGGAGATCAGCACAGACACAGATGTGCTCCCTGCATGGCCCAGCTGCCCATGGTCAGTAGCACT GATTGCACCCAAAGTAGGAGCAGTGGTTGGGTGAAGGTGAAGGTCCCAGACTGCTCCCTTTGTTTTTTGGTTGTGTCTG GGGGGGTTGCTGCGGTGAAGGGAGCATGGGGGAGAACACTTAGCCTATGGCCAGCTGAAGCTCTGCAGACCTGGATCAG GTGGCCCAGCGTGGGCTGACGTCATGTTGAGGTTCAGCTCTGCCAGGCTGTGCAGTGAAGCTTCCATTCCTCATCCAGA AGCTGGAGCCCTCTGCTCCTTGCAGCACTTGTATTCCTGAGCGTGACTCCCAGCACTTAGCAGCTCTTTACCTGAAGCT TCTGTCCTCCAGGGACTGCCTGCCACCTCAATCTGCTGGTGGCTCCCACTCCAACCCAGGAGCTTTGTGCTCTGCTCTT TTTGCCATGGTCTGTTTGGTGGACCTTTGGCACCACCTGTAATGTCTGTTCCTGTCAGAGTGCTCTCTCTGCTGTTTTC CCACCACCTATGACCTGCTAAGGAGCAGAAAGCACTGCAATTGAATGGATCACCAGATCTTCTCCTTCTCAGCATCCTT CCTCATGCTGTGGTCTCCTTCCAGCTGCTGCCCTGACTTCCCTGTATGCCACCTGATCTGTTAGCACAGGTTGGGATTG AAGGCAGCCAGGCTCTCTCCCAAATGCATGCGATGGAGATTGGCTGCACCGTTTGCATCGCTCCCCATCTGTTCTCAGG GACTCACCACTTCTCGCTC
Citation	Zwane TB, Nikitina NV. Spatiotemporal expression analysis of Prdm1 and Prdm1 binding partners in early chick embryo. Gene Expr Patterns. 2015 Jan;17(1):56-68. Epub 2015 Feb 17. DOI: 10.1016/j.gep.2014.12.003.
Copyright	Copyright © 2014 Elsevier B.V.
Comments	Authors indicated the probe was amplified by PCR using the following primers: 5'-GCTTTCAGGAGCATTTGGAG-3' and 5'-GAGCGAGAAGTGGAGAGTCC-3'. Above sequence was extracted from NCBI accession number XM_417719.6.