Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

CADM1
cell adhesion molecule 1

Gene

Official Symbol	CADM1
Official Full Name	cell adhesion molecule 1
CGNC ID	10821
also known as	IGSF4, Necl-2, RA175, SgIGSF, SynCAM1, TSLC1, cell adhesion molecule 1\|synaptic cell adhesion molecule\|tumor suppressor in lung cell-1, immunoglobulin superfamily, member 4D
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	XM_417901
Polypeptide	XP_417901

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	23705	ENSG00000182985		MIM:605686
Mouse	54725	ENSMUSG00000032076	All phenotypic alleles (7):Targeted, knock-out(3) Targeted, other(3) Gene trapped(1)	MGI:1889272
Xenopus	100496522, 735231			6033348
Zebrafish	562183, 569931	ENSDARG00000031075	ZDB-GENE-080327-34, ZDB-GENE-080505-2	ZFIN:ZDB-GENE-080327-34, ZFIN:ZDB-GENE-080505-2

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	419762
Ensembl Gene	ENSGALG00000014582
KEGG	gga:419762

Entry 1

GEISHA Id	I35	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GCCCGAGCGGAGCGGGGCGCGGCGCTGAGCCCACGGCGCGGAGGGCGGGGCTGGCGAGGAGGGGGCGTGGCTTGGCGCA GGCCCCGCCCCGCGCCGTGACGTCGCGCATCTCATTATCGCGGCGCGCGGTCGCTAGGTGCCGGCGCGGCGGGCAGAGC GAAGCAGGTGCCGGAGATGGCGGCTCGCGCGCAGCACAGCGGCCCCGCGGCGAACGGCGGCGGCGCTCCGGCCCTCCTC CCGCTGCTCCTCCTGCTCCTCTCCGCCGCCGCCATCATCCCCAGAGGTGATGGCCAGAACTTGATAACAGAAGATGTGA CGGTAGTGGAGGGGGACGTTGCCACCATCAGCTGTCGAGTCAAAAACAGCGACGACTCCGTGATTCAGCTCCTTAATCC CAACAGACAGACCATTTATTTCAGAGATTTCAGACCGCTGAAGGACAGCAGGTTTCAGCTGGTGAATTTCTCCAACAGT GAGCTCCTAGTGTCGCTGACGAACGTCTCTATTTCTGATGAAGGACGGTACTTCTGCCAGCTCTACACGGATCCGCCGC ATGAAATTTACACCACCATCTCAGTGCTGGTCCCACCACG
Reverse cDNA Template Probe	show GGGGGTTTTGTTTTTTTTGGCCAAGTCCGGGGCTTGGGTTTAGTTTAGTGAAGTCATTTGCAGAAGATTTTTGGGCCTT GTTTTATTTCTGTGGTTGTTTGGGTTTGGGAGGAGGCTGGGAAGAAGAGGGGCTTCTGTGCGTTAGTTCCCCTTCGGGG GTTTCTGTGGCTCTTTGTTTCCCCTTTTGTCCTCTGTTTCTGGAGTTGCCTGCTGGGAGGCCCCTTGGAATAGGTTGGT TTCTTTCGAGGTGTTTTTTTCCTTCTTTTTATCTTCACTGTGGTTTCTGTTGGAAACTCGGTTTCATCGGAGGAGAACC AGCACATTTTAGATTTCATAGTTTGGGCAATTCGCTGTACCCATACTCCATTTTCTCTATTGTCGTAAAGGCTTGGATA AACAAACGGAAACGAGAACCTGTTTGTGGCTGCCCGTGTTCCAAATGCTTTAGATTGATGGAGACTAGAGGAAATAGCC CGCAACTCAGAAAAGGTGCTGCCCGCCCGCGGTGCATCCATCCGCGCTCAGGGGCTCTGCTCCCAGCCAGGTGCCCTGC AGCCCCCGGCGGCTCTGGAGTGCAGGATCTGCCCCGGACTGAGGGTTTAGGGCAGGATTTCTGCTTGGATAACCATTGT CTCTGTCCCGACTTCTCCGGCCGATTTGCTAGCACAGGAAAAGCCCTCCCGGAGTGCCAACGGCTGCCAGTGTGCAGCT CGGTGCGGTTCTGACCCCTCCGTTGGCGTGGTGCTTGGAAGGCATCGGGGTGGGTGTGGGGTTGGGGGTGCTCATCCCA CTGGGATGGCCCGTGTGTCTCCAACCCCAAAGCCACCGCTGCGTCCGGTGCACTGCATCGGGTCCGAGCCCTGGGGTGG CTGGACAGGTACAACTGCCTTTTATTTTAGGTTTTATTTTGGTCTGATGGATAAAAAGTGGGAATTTGCGTTTAAAAAA AAAAAAAAAAAA

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 7

stage 8

stage 9

stage 11

stage 12

Paraxial Mesoderm
Somites

19-20

stage 19

stage 20

Outflow Tract
Pharyngeal Arches and Clefts
Somites
Surface Ectoderm

Entry 2

GEISHA Id	CADM1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TGCTGTTTGACACCTCAGTTCG
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGCCTTCTCGTTGCGATTTGCTATC	cDNA Template Length	1042
Forward cDNA Template Probe	show `TGTCACAANCTACAACGGANCTACATTCTCCTTTTTACCTATGGCCTTTAATAAGTTCAGCTTAGCACTGTTCATTTTT TTTTTTTTTNAAACCNAANTTCCCCTTTTTTTNCCCNCNAACCAAAAAAAAANAAAANAAAGGGGNNTTNTNCCNGNCC NCCCCCCCCGGGGCNCGAACCCAANGCAGGGNNGGACCCNNNGGGGGTTTNGGGGTNGNAAANNCNNGGNCCNNCCCNG GGGGANNAACCCCCAACCCCANCCCCNCCCNAANGCNTTCAAANNNCCNCCCNAAGGGNGGGGTAAAAACCCNAAANNT NCNCNNGGGNNCCCNTNGGNCCCCNGGGGGGGTTTTTCCGGGGCNANNAAANNGGGNAAAAG`