GEISHA - A Chicken Embryo Gene Expression Database
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CNTN2
contactin 2

Gene
Official SymbolCNTN2
Official Full Namecontactin 2
CGNC ID412
also known asAXONIN-1, contactin-2, contactin-2|contactin 2 (axonal)
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001004395
PolypeptideNP_001004395
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.2766
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human6900ENSG00000184144MIM:190197
Mouse21367ENSMUSG00000053024All phenotypic alleles (5):Targeted, knock-out(2) Targeted, other(3) MGI:104518
Xenopus1004870496070187
Zebrafish30726ENSDARG00000000472ZDB-GENE-990630-12ZFIN:ZDB-GENE-990630-12
Gene Ontology
Molecular Functioncell adhesion molecule binding
Biological Processneuron cell-cell adhesion, presynaptic membrane organization
Cellular Componentanchored component of membrane, plasma membrane
Links to other databases
Entrez Gene419825
Ensembl GeneENSGALG00000000653
KEGGgga:419825

Entry 1

GEISHA IdCNTN2.Yamagata.2012Data SourcePublication
Complete cDNA Template Probeshow
GCCGGGCTCAGCACCGCGGCAGGAGCTCCGCGGCCCCGCACTCCCCCGCCTCATGCTCAGCCCCCGACCCTATCCCAGG
GCTGCTGTCCCCACTCAGCCATAGAGCCACGGCCATAACATCTGGAGCACAGGATGGGAGGCACTGCTGCATTCATCTG
CACCTCCCTGGCCGTCATCATCTGCGTGGTCTGGTGCCAAGCACAGAGTGGCATGAGGAGCTACGGGCCGGTGTTTGAG
GAGCAGCCAGCACACACCCTGTTCCCTGAAGGCTCAGCAGAAGAGAAAGTGACGCTGACGTGTCGAGCCAGAGCCAACC
CCCCTGCAACATACAGATGGAAGATGAACGGCACAGAGCTGAAGATGGGGCCGGATTCACGGTACAGGTTGGTTGCTGG
GGACCTGGTGATAAGCAACCCAGTGAAAGCAAAGGATGCAGGCTCCTACCAGTGTGTGGCAACCAACGCCCGTGGCACA
GTGGTCAGCAGGGAAGCATCCCTCCGCTTTGGCTTTTTGCAGGAATTCTCTGCAGAAGAGCGAGACCCCGTGAAGATCA
CCGAAGGTTGGGGAGTGATGTTCACCTGCAGCCCCCCTCCCCATTACCCAGCCTTGTCCTACCGGTGGCTTCTGAATGA
GTTTCCCAACTTCATCCCAGCCGACGGAAGGCGTTTCGTCTCTCAGACCACAGGAAACCTCTACATTGCCAAGACAGAG
GCTTCCGACCTCGGCAACTACTCGTGCTTTGCCACCAGCCACATCGACTTCATCACCAAGAGCGTTTTCAGCAAGTTCT
CCCAGCTCAGCCTGGCTGCCGAGGACGCCAGGCAGTATGCACCCAGCATAAAAGCCAAGTTCCCTGCAGACACCTACGC
TCTGACCGGGCAGATGGTGACTCTGGAGTGTTTCGCCTTTGGGAACCCCGTTCCTCAAATAAAGTGGAGGAAGCTGGAT
GGCTCGCAGACCTCCAAGTGGCTCTCCAGTGAGCCCCTCCTGCACATCCAAAATGTTGACTTTGAAGATGAAGGCACTT
ATGAGTGCGAGGCTGAAAACATCAAAGGGAGGGACACCTACCAGGGCCGCATCATCATTCACGCTCAGCCGGACTGGCT
GGATGTGATCACGGACACGGAAGCTGACATTGGGTCCGACCTGCGCTGGAGCTGCGTGGCATCCGGCAAACCCCGGCCA
GCAGTGCGGTGGCTGCGGGATGGGCAACCTCTGGCCTCCCAGAACCGCATCGAAGTGAGCGGTGGAGAGCTGAGATTTT
CCAAGCTAGTCCTGGAGGACTCTGGCATGTATCAGTGTGTGGCTGAGAACAAGCATGGCACAGTATATGCAAGTGCTGA
ATTAACAGTGCAAGCCTTAGCACCAGATTTTAGACTAAACCCAGTTAAACGACTGATACCTGCAGCCCGGAGTGGGAAG
GTCATCATCCCATGCCAACCGAGAGCAGCACCAAAAGCCACTGTGCTCTGGACCAAAGGGACCGAACTGCTCACCAACA
GCAGCAGGGTGACTATTACTGCTGATGGCACCTTGATCCTCCAGAACATAAGCAAATCTGATGAGGGAAAGTATACCTG
CTTTGCTGAGAATTTCATGGGCAAAGCCAACAGCACGGGGATCCTCTCTGTTCGAGATGCCACCAAAATCACACTGGCA
CCATCCAGCGCTGATATCAATGTGGGTGAAAACCTCACTCTGCAGTGCCACGCATCCCACGACCCAACCATGGACCTAA
CCTTCACCTGGTCACTGGATGATTTCCCCATTGACTTGGACAAGTCGGAGGGGCATTACCGGCGAGCCAGCGTGAAGGA
AGCTGTTGGGGACCTTGCCATCGTCAATGCCCAGCTGAAGCACTCGGGGCGGTACACATGCACAGCCCAAACGGTTGTG
GACAGCACTTCGGAGTCGGCCACGCTGACTGTCAGAGGACCCCCCGGGCCCCCAGGGGGTGTGGTGGTGAGAGACATTG
GTGACACCACTGTCCAGCTGAGCTGGAGCCGTGGCTTTGACAACCACAGCCCCATCGCCAGGTACAGCATTGAGGCCAG
GACGCTGCTCTCCAACAAATGGAAGCAGATGCGCACCAATCCTGTAAACATCGAAGGCAACGCCGAGACAGCCCAGGTG
GTGAACCTCATCCCTTGGATGGATTACGAGTTTCGGGTCTTAGCAAGTAACATCCTTGGAGTTGGGGAGCCAAGCTTAC
CCTCCAGCAAAATCCGTACCAAAGAAGCAGCACCCACGGTGGCACCATCTGGGCTCGGCGGCGGCGGTGGGGCTCCCAA
TGAGCTCATCATCAACTGGACGCCAACACTGCGGGACTACCAGAATGGAGACGGCTTCGGCTACATCCTGTCGTTTCGT
AAGAAGGGCACTCAGGGATGGCTCACTGCCCGCGTGCCTCATGCAGAATCCCTGCATTACGTGTACCGCAACGAGAGCA
TTGGGCCCTACACCCCCTTCGAGGTGAAGATCAAAGCATACAACAGGAAAGGAGAGGGACCGGAGAGCCTCACTGCCAT
CGTGTACTCTGCAGAAGAAGAACCAAAAGTGGCTCCATTCAGAGTTACGGCCAAAGCCGTTCTATCCTCAGAAATGGAT
GTGTCCTGGGAGCCAGTGGAGCAGGGAGACATGACTGGTGTGCTGCTGGGCTATGAGATCCGGTACTGGAAAGACGGCG
ATAAAGAGGAGGCAGCTGACAGAGTGAGAACAGCAGGGTTGGTCACATCGGCTCACGTCACAGGCCTAAATCCCAACAC
GAAGTACCACGTCTCAGTGAGAGCCTACAACCGTGCTGGAGCTGGGCCCCCCAGCCCCTCTACCAACATCACGACCACA
AAGCCACCACCAAGGAGGCCACCAGGCAACATCTCCTGGACTCTGACTGGGTCTACCGTCACCATCAAGTGGGACCCAG
TGGTGGCACAGGCAGATGAGTCTGCAGTTACAGGGTACAAGATGCTTTACAGGCAGGATTCTCACTCTGCTCCCACGCT
GTACCTGGCGAGCAAGAGCCGGATTGACATCCCAGTGCCTGAGGACTTCACTCATGCCTTCGTACAGATCCGGGTGACG
GGGCCTGGGGGGGACGGGACCCCAGCAGAAGTCCACATCGTCCGAAACAGTGGGACCAGTATGATGGTGGAAGACTCCG
TGACGAGGCCGGTGCCACACGCTGCCATCATCACCACCAACTCCCTGGCCATGGTGGCCCTGATCCGCTACCTGGAGCT
CTGATGGGGCCGGTGAAGCTGGGATGTGGGACGTGCCTCCTCCCAGGGCAGCAGGAACTGCTCAATGTTTGGTGCTGCA
CCTCCGTGTTTGGACCGCAGCAGTGTTACAGAGAGGGATTTGCTAGCATTATCTGAAGGGAGGAAGAAAGAAACAGCTT
TTTTGTTGTTGTTGTTCCTTTGGAAGAGTATGAGATTCCATACAAGACATGGATCTGCAACCAATCGACATCTTTTTTA
AGAAATGAGCAAAACAAAGAAGAATTCTACCCAAATTCAGACAGCCGGCTGCCCTGCACACCGCATTGAGAAGGTTTGC
TGCCTTACGAAGCCATGTACTACAATAACCAGACTGCTCAACTTGACTTTTTTTTTAACATGTACAGTGTATTTGGGGG
AGGGGGAAGGGAGACCGGGGACTGAGGACTTCCACGTGATGGGCACGCTCCACACCGACCCCAACCACAGCCATCTCTA
AGGAGCGATGGGATGCGATTCACCTCCCCATCATAAGAGCCAAATTCCACAGCAATGAGCCCAAGGAGACAAAGCCACA
AGAGACACCGCTCTCTGCTTCATGCTGAAGGAGATGGGTGAACACAAGAGTTCAGCTTGTGAACATCTCTTTTTTTCTT
TTTATGACACTGGTGTTAACTCGCAGCCTCGTGTTTGTATCAGCTGCCATGCTGTGAGGTGCAATGTTTGATGTTATCC
ATATCCCACCTGGAAAA
CitationYamagata M, Sanes JR. Expanding the Ig superfamily code for laminar specificity in retina: expression and role of contactins. J Neurosci. 2012 Oct 10;32(41):14402-14. 10.1523/JNEUROSCI.3193-12.2012.
CopyrightCopyright © 2012 the authors
CommentsAccording to the authors, "Full-length chicken cntn1, 2, 4, and 5 cDNAs and partial chick cntn3 and 6 cDNAs were amplified from oligo-dT-selected mRNA from embryonic day (E) 15 chick retina and optic tectum, using SuperScript III (Life Technologies), and Phusion high-fidelity thermostable DNA polymerase (New England BioLabs), and the products were cloned into pCR8-TOPO (Life Technologies)." As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence was obtained from NCBI (acc# NM_001004395.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-41
stage 40
stage 40
stage 40
stage 40
stage 40
stage 40
stage 40
stage 41
stage 41
stage 41
stage 41
stage 41
Retina
Double labeled in situs: CNTN2(red): DSCAML(green)
Double labeled in situs: CNTN2(red): DSCAM(green)
Double labeled in situs: CNTN2(red): SDK1(green)
Double labeled in situs: CNTN2(red):CNTN3(green)
Double labeled in situs: CNTN2(red):CNTN4(green)
Doubled labeled in situs: CNTN2(red): SDK2(green)
double labeled in situs: CNTN1(green):CNTN2(red)
double labeled in situs: CNTN2(red):CNTN5(green)

Entry 2

GEISHA IdCNTN2.Ratie.2014Data SourcePublication
Complete cDNA Template Probeshow
GCCGGGCTCAGCACCGCGGCAGGAGCTCCGCGGCCCCGCACTCCCCCGCCTCATGCTCAGCCCCCGACCCTATCCCAGG
GCTGCTGTCCCCACTCAGCCATAGAGCCACGGCCATAACATCTGGAGCACAGGATGGGAGGCACTGCTGCATTCATCTG
CACCTCCCTGGCCGTCATCATCTGCGTGGTCTGGTGCCAAGCACAGAGTGGCATGAGGAGCTACGGGCCGGTGTTTGAG
GAGCAGCCAGCACACACCCTGTTCCCTGAAGGCTCAGCAGAAGAGAAAGTGACGCTGACGTGTCGAGCCAGAGCCAACC
CCCCTGCAACATACAGATGGAAGATGAACGGCACAGAGCTGAAGATGGGGCCGGATTCACGGTACAGGTTGGTTGCTGG
GGACCTGGTGATAAGCAACCCAGTGAAAGCAAAGGATGCAGGCTCCTACCAGTGTGTGGCAACCAACGCCCGTGGCACA
GTGGTCAGCAGGGAAGCATCCCTCCGCTTTGGCTTTTTGCAGGAATTCTCTGCAGAAGAGCGAGACCCCGTGAAGATCA
CCGAAGGTTGGGGAGTGATGTTCACCTGCAGCCCCCCTCCCCATTACCCAGCCTTGTCCTACCGGTGGCTTCTGAATGA
GTTTCCCAACTTCATCCCAGCCGACGGAAGGCGTTTCGTCTCTCAGACCACAGGAAACCTCTACATTGCCAAGACAGAG
GCTTCCGACCTCGGCAACTACTCGTGCTTTGCCACCAGCCACATCGACTTCATCACCAAGAGCGTTTTCAGCAAGTTCT
CCCAGCTCAGCCTGGCTGCCGAGGACGCCAGGCAGTATGCACCCAGCATAAAAGCCAAGTTCCCTGCAGACACCTACGC
TCTGACCGGGCAGATGGTGACTCTGGAGTGTTTCGCCTTTGGGAACCCCGTTCCTCAAATAAAGTGGAGGAAGCTGGAT
GGCTCGCAGACCTCCAAGTGGCTCTCCAGTGAGCCCCTCCTGCACATCCAAAATGTTGACTTTGAAGATGAAGGCACTT
ATGAGTGCGAGGCTGAAAACATCAAAGGGAGGGACACCTACCAGGGCCGCATCATCATTCACGCTCAGCCGGACTGGCT
GGATGTGATCACGGACACGGAAGCTGACATTGGGTCCGACCTGCGCTGGAGCTGCGTGGCATCCGGCAAACCCCGGCCA
GCAGTGCGGTGGCTGCGGGATGGGCAACCTCTGGCCTCCCAGAACCGCATCGAAGTGAGCGGTGGAGAGCTGAGATTTT
CCAAGCTAGTCCTGGAGGACTCTGGCATGTATCAGTGTGTGGCTGAGAACAAGCATGGCACAGTATATGCAAGTGCTGA
ATTAACAGTGCAAGCCTTAGCACCAGATTTTAGACTAAACCCAGTTAAACGACTGATACCTGCAGCCCGGAGTGGGAAG
GTCATCATCCCATGCCAACCGAGAGCAGCACCAAAAGCCACTGTGCTCTGGACCAAAGGGACCGAACTGCTCACCAACA
GCAGCAGGGTGACTATTACTGCTGATGGCACCTTGATCCTCCAGAACATAAGCAAATCTGATGAGGGAAAGTATACCTG
CTTTGCTGAGAATTTCATGGGCAAAGCCAACAGCACGGGGATCCTCTCTGTTCGAGATGCCACCAAAATCACACTGGCA
CCATCCAGCGCTGATATCAATGTGGGTGAAAACCTCACTCTGCAGTGCCACGCATCCCACGACCCAACCATGGACCTAA
CCTTCACCTGGCACTGGATGATTTCCCCATTGACTTGGACAAGTCGGAGGGGCATTACCGGCGAGCCAGCGTGAAGGAA
GTGTTGGGGACCTTGCCATCGTCAATGCCCAGCTGAAGCACTCGGGGCGGTACACATGCACAGCCCAAACGTTGTGGAC
AGCACTTCGGAGTCGGCCACGCTGACTGTCAGAGGACCCCCCGGGCCCCCAGGGGGTGTGGTGGTGAGAGACATTGGTG
ACACCACTGTCCAGCTGAGCTGGAGCCGTGGCTTTGACAACCACAGCCCCATCGCCAGGTACAGCATTGAGGCCAGGAC
GCTGCTCTCCAACAAATGGAAGCAGATGCGCACCAATCCTGTAAACATCGAAGGCAACGCCGAGACAGCCCAGGTGGTG
AACCTCATCCCTTGGATGGATTACGAGTTTCGGGTCTTAGCAAGTAACATCCTTGGAGTTGGGGAGCCAAGCTTACCCT
CCAGCAAAATCCGTACCAAAGAAGCAGCACCCACGGTGGCACCATCTGGGCTCGGCGGCGGCGGTGGGGCTCCCAATGA
GCTCATCATCAACTGGACGCCAACACTGCGGGACTACCAGAATGGAGACGGCTTCGGCTACATCCTGTCGTTTCGTAAG
AAGGGCACTCAGGGATGGCTCACTGCCCGCGTGCCTCATGCAGAATCCCTGCATTACGTGTACCGCAACGAGAGCATTG
GGCCCTACACCCCCTTCGAGGTGAAGATCAAAGCATACAACAGGAAAGGAGAGGGACCGGAGAGCCTCACTGCCATCGT
GTACTCTGCAGAAGAAGAACCAAAAGTGGCTCCATTCAGAGTTACGGCCAAAGCCGTTCTATCCTCAGAAATGGATGTG
TCCTGGGAGCCAGTGGAGCAGGGAGACATGACTGGTGTGCTGCTGGGCTATGAGATCCGGTACTGGAAAGACGGCGATA
AAGAGGAGGCAGCTGACAGAGTGAGAACAGCAGGGTTGGTCACATCGGCTCACGTCACAGGCCTAAATCCCAACACGAA
GTACCACGTCTCAGTGAGAGCCTACAACCGTGCTGGAGCTGGGCCCCCCAGCCCCTCTACCAACATCACGACCACAAAG
CCACCACCAAGGAGGCCACCAGGCAACATCTCCTGGACTCTGACTGGGTCTACCGTCACCATCAAGTGGGACCCAGTGG
TGGCACAGGCAGATGAGTCTGCAGTTACAGGGTACAAGATGCTTTACAGGCAGGATTCTCACTCTGCTCCCACGCTGTA
CCTGGCGAGCAAGAGCCGGATTGACATCCCAGTGCCTGAGGACTTCACTCATGCCTTCGTACAGATCCGGGTGACGGGG
CCTGGGGGGGACGGGACCCCAGCAGAAGTCCACATCGTCCGAAACAGTGGGACCAGTATGATGGTGGAAGACTCCGTGA
CGAGGCCGGTGCCACACGCTGCCATCATCACCACCAACTCCCTGGCCATGGTGGCCCTGATCCGCTACCTGGAGCTCTG
ATGGGGCCGGTGAAGCTGGGATGTGGGACGTGCCTCCTCCCAGGGCAGCAGGAACTGCTCAATGTTTGGTGCTGCACCT
CCGTGTTTGGACCGCAGCAGTGTTACAGAGAGGGATTTGCTAGCATTATCTGAAGGGAGGAAGAAAGAAACAGCTTTTT
TGTTGTTGTTGTTCCTTTGGAAGAGTATGAGATTCCATACAAGACATGGATCTGCAACCAATCGACATCTTTTTTAAGA
AATGAGCAAAACAAAGAAGAATTCTACCCAAATTCAGACAGCCGGCTGCCCTGCACACCGCATTGAGAAGGTTTGCTGC
CTTACGAAGCCATGTACTACAATAACCAGACTGCTCAACTTGACTTTTTTTTTAACATGTACAGTGTATTTGGGGGAGG
GGGAAGGGAGACCGGGGACTGAGGACTTCCACGTGATGGGCACGCTCCACACCGACCCCAACCACAGCCATCTCTAAGG
AGCGATGGGATGCGATTCACCTCCCCATCATAAGAGCCAAATTCCACAGCAATGAGCCCAAGGAGACAAAGCCACAAGA
GACACCGCTCTCTGCTTCATGCTGAAGGAGATGGGTGAACACAAGAGTTCAGCTTGTGAACATCTCTTTTTTTCTTTTT
ATGACACTGGTGTTAACTCGCAGCCTCGTGTTTGTATCAGCTGCCATGCTGTGAGGTGCAATGTTTGATGTTATCCATA
TCCCACCTGGAAAA
CitationRatié L, Ware M, Jagline H, David V and Dupé V (2014) Dynamic expression of Notch-dependent neurogenic markers in the chick embryonic nervous system. Front. Neuroanat. 8:158. doi: 10.3389/fnana.2014.00158
CopyrightCopyright © 2014 Ratié, Ware, Jagline, David and Dupé.
CommentsThe sequence below was obtained from NCBI (acc # NM_001004395.1) using the information provided in the publication as described in Ratie et al.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
stage 10
stage 12
Pharyngeal Arches and Clefts
Pituitary (Rudiment)
Rhombomeres
 
13-18
stage 14
stage 14
stage 14
stage 15
stage 16
stage 16
stage 16
stage 17
stage 17
stage 17
stage 18
stage 18
stage 18
stage 18
Cranial PNS
Peripheral Nervous System
Rhombomeres
Spinal Cord
Unlabeled
Double labeled with HuC/D antibody (brown) and mRNA Probe (blue)
control - shows normal expression
19-22
stage 22
stage 22
stage 22
stage 22
stage 22
stage 22
Cranial PNS
Peripheral Nervous System
Rhombomeres
Spinal Cord
Spinal Ganglia and Nerves
Double labeled with HuC/D antibody (brown) and mRNA Probe (blue)
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.2766

Mouse

EmageMGI:104518
EurexpressMGI:104518
MGI GXDMGI:104518

Frog

Xenbase6070187

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-990630-12
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