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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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KLF6
Kruppel like factor 6

The human orthologue of this gene is associated
with the following human diseases:

Gene

Official Symbol	KLF6
Official Full Name	Kruppel like factor 6
CGNC ID	5329
also known as	Krueppel-like factor 6, KLF6
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001030969
Polypeptide	NP_001026140
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.11841

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	1316	ENSG00000067082	MIM:137215	MIM:602053
Mouse	23849	ENSMUSG00000000078	All phenotypic alleles (4):Targeted, knock-out(1) Targeted, other(3)	MGI:1346318
Xenopus	493232, 446965, 379949, 100127627, 443752			986302, 1008747
Zebrafish	280650, 793760	ENSDARG00000029072	ZDB-GENE-021115-9, ZDB-GENE-070912-633	ZFIN:ZDB-GENE-021115-9, ZFIN:ZDB-GENE-070912-633

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	420463
Ensembl Gene
KEGG	gga:420463

Entry 1

GEISHA Id	ChEST837d22	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show TCGTGGGCTAAGAGGCGTCAAGGTTGAAGAGCCTTGAGCAGAGGGATGCGTGTTCCAGCCAAAGCATGCCATTTTGCAC CCTACCCAGTTGCCTCCAGGACCTCACTTCCTTGAAGGTCTTTTGAGGGCTAATAAGTCATGTAAGAAACGGCATAGCA ACCATGGTGCGTGATGTTTGGGGTTTCCTGGACTCATACACTGGTATCTAACCTTCTGAGTGGCTCCTAAGCCTTTGCC GTGAGCATGTGCACTGAGAATGTTAATGATTGGGCGACTGTATGCTATGAGGATCTATTGACGATTGTATGCTGAGGCA CATTTTTTTTCTTGTGGTTGTTTTATAACTGTAAGAGAAAAAAAAAAAAAAGTCTGAATGTCTTGTATGTGAGGAATAT CTCGTGAGATGGGACGACCACCAATCATTTCCAAGGGATGGGGGGAGGGCTGTCTGCACCTTTTTAGAGGGAAAACAGA GAGGGGAAAGGGGAATTAAAAAGAGTCAGGATGCCAGAATGGAGATGGGGACCTCCCCGTTCCTGTGTGAGAGGAGCTT TAGGTGTCTGGTGCAGCTATTAAACGTGCAATGTGTCAAGTAGCTTGTTTTACTTGCTACAGAGCTCATTTGTAATCCA TTGTATAAGCTGTGTATTTACAAATGTAACACAACTATAACTTTTCATTATAATACAAAAGTTATTGCATGGTCCTGG

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

stage 6

Anterior Intestinal Portal
Epiblast
Head Process
Neural Plate/Tube
Primitive Streak

7-12

stage 8

stage 9

stage 10

Blood Islands
Early Endoderm
Endoderm
Epiblast
Extraembryonic
Forebrain
Head Mesenchyme
Liver
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Surface Ectoderm

Spots
endothelia

13-18

stage 14

stage 15

stage 17

stage 18

Hindbrain
Midbrain
Myotome
Pituitary (Rudiment)
Somites
Spinal Cord
Veins

19-20

stage 19

stage 20

Myotome
Pituitary (Rudiment)
Spinal Cord

crud

Entry 2

GEISHA Id	KLF6.Antin.2010	Data Source	Publication
Complete cDNA Template Probe	show TCGTGGGCTAAGAGGCGTCAAGGTTGAAGAGCCTTGAGCAGAGGGATGCGTGTTCCAGCCAAAGCATGCCATTTTGCAC CCTACCCAGTTGCCTCCAGGACCTCACTTCCTTGAAGGTCTTTTGAGGGCTAATAAGTCATGTAAGAAACGGCATAGCA ACCATGGTGCGTGATGTTTGGGGTTTCCTGGACTCATACACTGGTATCTAACCTTCTGAGTGGCTCCTAAGCCTTTGCC GTGAGCATGTGCACTGAGAATGTTAATGATTGGGCGACTGTATGCTATGAGGATCTATTGACGATTGTATGCTGAGGCA CATTTTTTTTCTTGTGGTTGTTTTATAACTGTAAGAGAAAAAAAAAAAAAAGTCTGAATGTCTGGTATGTGAGGAATAT CTCGTGAGATGGGGACGACCACCAATCATTTCCAAGGGGATGGGGGGAGGGCTGTCTGCACCTTTTTAGAGGGAAAACA GAGAGGGGAAGGGGGACTTAAAAAGAGTCAGGATGCCAGAATGGGACGATGGGGACCTCCCCGTTCCTGGTGTGAGAGG AGCTTAAGGTGTCTGGTGCAGCTATTAAACGTGCAATGGTGTCAAGTAGCTGGTTTAACTTGCTACAGAGCTCATTTGT AATCCATN
Citation	Antin PB, Pier M, Sesepasara T, Yatskievych TA, Darnell DK. Embryonic Expression of the Chicken Krüppel-like (KLF) Transcription Factor Gene Family. Dev Dyn. 2010 Jun;239(6):1879-87.
Copyright	Copyright © 2010 John Wiley & Sons, Inc. All Rights Reserved.
Comments	Probes were prepared using the entire cDNA insert in each EST clone. KLF 6 was made using clone ChEST837d22, which is represented in genbank by BU485220.1.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

Epiblast

7-12

stage 7

stage 10

Early Endoderm
Endoderm
Epiblast
Lateral Plate Mesoderm
Surface Ectoderm

19-20

stage 20

Myotome

Entry 3

GEISHA Id	KLF6.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GCAGCCAGCGCCGTGTTTGCAAATATTGAGCCCGCTCCTGCGCAAGTGTCCGCCGCCGGCCGCGGGAGGGGAGAGCGGC CGCCTCGGGAGACGTCCTGCCTTGCTGTGCAATTAAACTTTGCATGAAACTTCGGGTCTTTTTTCCTCCCTAAGCTCGC CAAGGAATTAATTTCTATCTATTTGTATATATATATATATACAATTTTTTTTTCTTCTCTGGAGGAAGGGGGGGGGCTT GGAGACTGAGAGCAGAGGGCTGACACCCCCCGCACACACCCCTCGAGCCCCGCACACAGGAGGCAGCTGTCCGTGTCCG CGGCCGCCAGCACGGACTTTGTTGTTGCAACTTGAGACATGGATGTGCTCCCCATGTGCAGCATCTTCCAGGAACTGCA GATTGTGCACGACACGGGCTACTTCTCGGCCTTACCGTCCCTGGAGGAATATTGGCAACAGACGTGTTTGGAGTTGGAA CGGTATCTTCAAAGCGAACCTTGCTATGTGTCTGCATCTGAAATCAAATTTGATAACCAAGAGGATCTCTGGACCAAAA TTATTCTGGCACGTGAGAAAAAGGAGGAATCTGAACTGAAGACTGCATGTGTCCCAAAGGAGGACAGCTCTACCAGTCA GAACTTAGAGACCAATAGTTTGAATTCGGATGTGAGCAGCGAATCTTCAGACAGCTCTGAGGAACTCTCGCCCACCACC AAGTTTACCTCTGACCCTATAAGTGACGTTTTAACCAATTCAGGAAACTTGTGTTCGTCTGTTACTTCCACTCCCCCAT CGTCTCCTGAGCTGAGCAAGGAGCCTTCTTCCCAGCTATGGAATTGTACGCCGGGTGAGTTGCATTCACCAGGGAAAAT TCGTACCGGTACCGCTGGAAAGACTGCAGAAAAAGGTACACCCGCCAATGGGGACACCTCGCCAGATGGCAGAAGGCGT GTTCACAGGTGTCATTTTAACGGTTGCAGGAAAGTTTACACCAAAAGTTCACATCTGAAAGCACATCAGCGCACTCATA CAGGGGAGAAGCCTTACAGATGTTCATGGGAAGGGTGTGAGTGGCGTTTCGCAAGAAGTGATGAATTAACCAGACACTT CAGAAAGCACACTGGTGCCAAGCCTTTTAAATGTAGTCACTGTGACAGGTGTTTTTCCAGGTCTGACCACCTGGCCCTT CACATGAAGAGACACCTCTGAACAGGTCAAGAGGTGAATCCTGTGGGCTAAGAGGCGTCAAGGTTGAAGAGCCTTGAGC AGAGGGATGCGTGTTCCAGCCAAAGCATGCCATTTTGCACCCTACCCAGTTGCCTCCAGGACCTCACTTCCTTGAAGGT CTTTTGAGGGCTAATAAGTCATGTAAGAAACGGCATAGCAACCATGGTGCGTGATGTTTGGGGTTTCCTGGACTCATAC ACTGGTATCTAACCTTCTGAGTGGCTCCTAAGCCTTTGCCGTGAGCATGTGCACTGAGAATGTTAATGATTGGGCGACT GTATGCTATGAGGATCTATTGACGATTGTATGCTGAGGCACATTTTTTTTCTTGTGGTTGTTTTATAACTGTAAGAGAA AAAAAAAAAAAGTCTGAATGTCTTGTATGTGAGGAATATCTCGTGAGATGGGACGACCACCAATCATTTCCAAGGGATG GGGGGAGGGCTGTCTGCACCTTTTTAGAGGGAAAACAGAGAGGGGAAAGGGGAATTAAAAAGAGTCAGGATGCCAGAAT GGAGATGGGGACCTCCCCGTTCCTGTGTGAGAGGAGCTTTAGGTGTCTGGTGCAGCTATTAAACGTGCAATGTGTCAAG TAGCTTGTTTTACTTGCTACAGAGCTCATTTGTAATCCATTGTATAAGCTGTGTATTTACAAATGTAACACAACTATAA CTTTTCATTATAATACAAAAGTTATTGCATGGTTCTGGGGAACTATATGCTTTTCCATTCTTTAATCAGGACTGCAGTT TTGATTCCAGTTAAGAGCAGCTAAAATACAATTGGTCTAATGTTACATAATGTATGGAACATGAATAATTTTTTCTGTT GGGTGGATAAAACCACTATTGGTTAGAAACTGATTTTTCTCATGCAGCTAATTTTTCTCTTATTTATGCCTTGAGGACT AACTTCTGGTTTTCTAGCTGTTAATGCACTGTTGACCTTAATAATGGTGCCTTATGCAAGTGACCTTCTCTTGTGGGGG GTCTTATACAGGGGTATGGGTGATGCATGCTTTATTAAGGCTCTCTTTTCACCTGGCATTGTACTGTATCAAATGTATA ATATGAGGGAAAAAAAAAAAAGGTTACTTCCAGGGTCCTCCTTCACAAAGACAAATATAGAGAAAAGTCATTCATGTCA GTACAGTATTTGTTTAACTTAGACAATTTGACTGTGTTACAGTATAATGCATATGCCAATTGAATACCTGACCAGTTCT GCCACCTTGAGACTTTTATATTGACCTTGCACAACTGTGTATATACACACCCCAACTGTACTTAATATGTTGAGTTTTC ATACATATTAAAGATACAGAAGTATTAAAAGATGTATTTGCTTAAAAGGCACAAGTTTCACATCTATATATCTAGCTAT CTGTTGGTCATACAGAAAGAAACTATATTACTTTTTTTTTTAAAAGTGGGCAGAAGAATAATTGTGTATGTATATTTGT GTGTACAGTCTGTGTATGTGTGTATATATATAGATAATATATAAATATTTTTTTTAAAAGGAAAAAAATTTAGAACGCA TAGCTAGAAAATGCCACAGCCCGTCAAAATATTCCCCCCCCCCCGTTCCCCAAATATGGTCATTAAGGAGACAAAGAAA TGAGGGATACAGTTATTAAAATCTAGCGTTTTTAGAGGCTTTACCTTTAGCTTAATGGTGTGCTAAAGGCTTTGTTGGC ATTCAGTCCTTCTCAGACTGCTGACTGTGTTTTGTAGTTATTAGGTTGTCTGGAATAGCGTATCTGTGGCCATTTAAGA ATGATATGAACCGAATATTGGCATGCTAAAAGAATATTAGCTGTGTGCAGATGAAGTACACTCATATTTTGGCCTTCCA GCTTATGGAAGGACCCGTGAGTGAGCTAGTCGTTGTGGTGGTTGAGCTCTAATTTTGCATAGTTCAGCTAAAATGAAGA CTGTTTTTTCCTAGAATAGAAATAGTCTGTCCAAAAGCAGTTGTTCTTTTTGTTTTTGTTTTTTAATCAGCTCACTACA GTTGATGCAACGAAACACGTGATCTGTTTCTTTTTTTATTTATTATTGGTCTTGCTTACTATGCTAATACTTTGGTATA TCTTTCCTGGAAATGTATGTAGATAAGTGGTTTAGGAAAAAGTATGTGCCAGTGATCTGGTTCTATGGAACACACAGGC TTAAATCATTCTCATTTCATTTTTACTTTAAATTGCCTGAAATTGCACTTTCCCCCCTCCCCCCCGAAACTAAAATTTC CAGAAAGTGGATTTCTATTTAGAGTTTAGTTTAGTTTTTTTTTTTTTTTTAACTCCTTATTTGCATTGTCCTTGGCTTA GCCATACTTCTGAAAAGCACGAAAGGAAACAAAAGAAAAAAAAAATTACCCCAAACAAAAACCATTAAACTTGCACTGG CTTGTCTCAATTGTGAAATACGATCAGACTTGTGTGGATGGGGTGGGGCTGTGTGCCATATGTCAAATGCCTGTAATTT TCTTAACAAGCAAGTACATTTTGTTCAGGTGATAACTGAGCCTCAATCAAGCTGAAAAATAAAAAATAAAAATAAAAAA AAAACATTTTTGCTTGAAATTTAAGAAGAAAATGTTTCTATTAGTGAAATTTCTTTTTTTGTTTTTGAAGCACCCTGTT ATCTAAAGAATCTCTTTGTAAGATTTTTGTAAAGATTTTGTTTTACAAGATTTTATTTGAAATTGTTTTTTGCAAGATT GTTATATTTCTGTATGAATGTATTTTTTATTGGAATAACATAAAAAGAAATTCTTATCAGCA
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001030969).