GEISHA - A Chicken Embryo Gene Expression Database
Browse By
- Anatomical Location
- Stage
- Gene Name
- GEISHA ID
- Multiple Parameters
Search
- Quick Search
Data Class
Enter Text:
go
- Gene Family QuickSearch
Transcription Factors
Growth Factors
Receptors
MicroRNAs
- Human Disease Gene Search
Documents
- Downloads
- Protocols
- About GEISHA
- Contact Us
Resources
- Transgenic Birds
- Model Organism Databases
- Gene Expression Databases
- Genomic Resources
- Anatomical Atlases
- Chicken Stage Series
_

HOXA6
homeobox A6

Gene
Official SymbolHOXA6
Official Full Namehomeobox A6
CGNC ID51307
also known asHOX1, HOX1.2, HOX1B, homeobox protein Hox-A6|homeo box 1B|homeo box A6|homeobox protein HOXA6|homeobox protein Hox-1B
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001030987
PolypeptideNP_001026158
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.22376
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human3203ENSG00000106006MIM:142951
Mouse15403All phenotypic alleles (2):Targeted, knock-out(2) MGI:96178
Xenopus100485428481963
Zebrafish
Gene Ontology
Molecular Functionsequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Processmulticellular organismal development, transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene420630
Ensembl Gene
KEGGgga:420630

Entry 1

GEISHA IdHOXA6.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerGCAGGACAAGACCTACACCTCACC
Reverse cDNA Template PrimerAATTAACCCTCACTAAAGCGGTAAGGCAGAGAGCGTTCGcDNA Template Length440
Forward cDNA Template Probeshow
CACTGTGANGATTGACAATCACTTGCGTCGCCTCGGGTTAGTATCGGTTAAAAGGAACTCCCTCTCTAACTCTCTTTCT
TGGGAGCGGGTGTAAATCTGCCTCCCTCGTGTTCCATGAGCTCCATATACTGGGACGATGCAGGAGTTTATCCCCGGCA
TTCAGGGGTAAACAGGGCTCGTGTACTTCCGGACGGTGCCTTCATCATTCACGATTGTACTTTGCCGGCCCTAGTATTT
GCATTGTTGCTCGGGAAAAGCCGCAGATAGTTCCCTTGTTGCCTCTTCTTGCCACTACGGGAGGGAGAGGTGCAACTAA
TTTCCTTGTGTGATACGAGAAGAGGCGTCTTTTTCATAATTAACCCCCTAGCAAATACTGAGTGTGTTTTGCAACTCAT
CCCCGGGGNGGGNGATCTGTTAGAATGGAACTCCTTCTCTAACTCTAGCGTTCTGTAACTGGTGTAAGTCTTCCTGGCT
AGATGCCCATCAGCTTCTTATAACGTACCGGCTCAAGAGTTCATCCGGTGCATCCGTGCGTCAACTCGGCTGGGGTAAA
TCAGGTCCATGCCTTCATATCTCCCCATTTCCTTTGGACTTAGATTTGATTCTATTGGATGCTACATCGTAAAGTAGCA
AGAACCACCTTATCTACTCTGCCTGCTACTCCCAGATGCAGAGGAGGACCCGTTTCCATATCTTAATGGAAACTAGAGG
GTACCTTACTGGTAGTAAACTTCACTTTTCAGCCTTAAAGTTTTTGAACTTTGTTCTTTAAACCGGACTCTTACCGTAG
ACTTTTCCTCACCATTCCAAACTCTCTCCTTACGCTTTGTGAGGGTTTATTAAAA
CommentsNo specific expression detected at or below stage 5.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 7
stage 8
stage 9
Lateral Plate Mesoderm
Neural Plate/Tube
Primitive Streak
 
13-18
stage 13
stage 14
stage 16
stage 17
Intermediate Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Somatic Mesoderm
Somites
Spinal Cord
Tail
Staining observed in forebrain and hindbrain due to trapping.
Staining observed in the forebrain due to trapping.
19-24
stage 19
stage 20
stage 24
Anterior Neuropore
Ear/Otic Placode
Leg
Limb Buds
Neural Plate/Tube
Somatic Mesoderm
Somites
Spinal Cord
Tail
Wing
 
25-30
stage 25
stage 30
stage 30
stage 30
Leg
Somatic Mesoderm
Somites
Spinal Cord
Tail
Wing
 

Entry 2

GEISHA IdHOXA6.Barak.2012Data SourcePublication
Complete cDNA Template Probeshow
GCCCTTATGAGTTCGTACTTTGTGAACCCCACTTTCCCCGGGAGCCTGCCCGCTGGCCAGGACTCCTTCCTCGGGCAGA
TCCCCCTGTACCCGGCGGGCTATGATGCTCTGAGGCATTTTCCGACTTCGTACGGGGCGAGCAGCCTGCAGGACAAGAC
CTACACCTCACCTTGTTTCTATCAACAGTCCAACACCGTCATTGCTTGCAATCGGGCTTCCTATGAGTACGGAGCCTCC
TGTTTCTATTCAGACAAGGAAATTAGTAGCGCCTCTCCCTCCGGCAGTGGCAAGCAGAGGGGACAAGGGGACTATCTGC
ACTTTTCTCCCGAGCAACAATACAAATCTAACGGCGTGCAAAGCAAAATCGTGAATGACGAAGGCACCGACCGGAAGTA
CACGAGCCCTGTTTACCCCTGGATGCAGCGGATGAACTCCTGTGCCGGTACAGTATATGGAGCTCATGGGAGACGAGGG
AGGCAGACTTACACCCGCTACCAAACGCTAGAGTTAGAGAAGGAGTTCCATTTTAACAGATACTTAACCCGAAGACGAC
GCATTGAGATTGCGAACGCTCTCTGCCTTACCGAGCGCCAGATTAAAATATGGTTTCAAAACAGGCGGATGAAATGGAA
AAAGGAAAACAAATTCATAAATTCCACCCAGCCCGGCAGCGACGAAACAGAGGAAAAGTCAGGGGAGTAGAACCGTGTT
TAATAAACGCTACCAGGCCCGTCAAAAAAAAAAAAAAA
Citation Barak H, Preger-Ben Noon E, Reshef R. Comparative spatiotemporal analysis of Hox gene expression in early stages of intermediate mesoderm formation. Dev Dyn. 2012 Oct;241(10):1637-49.
CopyrightCopyright © 2012 Wiley Periodicals, Inc.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_001030987.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
stage 6
stage 6
Primitive Streak
Unlabeled
 
7-11
stage 7
stage 7
stage 8
stage 8
stage 9
stage 9
stage 10
stage 10
stage 11
stage 11
Central Nervous System
Headfold
Intermediate Mesoderm
Neural Plate/Tube
Primitive Streak
Somatic Mesoderm
Tail
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.22376

Mouse

EmageMGI:96178
EurexpressMGI:96178
MGI GXDMGI:96178

Frog

Xenbase481963

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
Home | Contact
     
© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona